HEADER HYDROLASE 13-DEC-11 3V39 TITLE BD3459, A PREDATORY PEPTIDOGLYCAN ENDOPEPTIDASE FROM BDELLOVIBRIO TITLE 2 BACTERIOVORUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BD3459 RESIDUES 37-446; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 959; SOURCE 4 STRAIN: HD-100; SOURCE 5 GENE: BD3459; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PEPTIDOGLYCAN TRANSPEPTIDASE FOLD, ENDOPEPTIDASE, SERINE MODIFIED BY KEYWDS 2 HEPES BUFFER MOLECULE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING,T.R.LERNER,R.E.SOCKETT REVDAT 2 11-APR-12 3V39 1 JRNL REVDAT 1 22-FEB-12 3V39 0 JRNL AUTH T.R.LERNER,A.L.LOVERING,N.K.BUI,K.UCHIDA,S.AIZAWA,W.VOLLMER, JRNL AUTH 2 R.E.SOCKETT JRNL TITL SPECIALIZED PEPTIDOGLYCAN HYDROLASES SCULPT THE JRNL TITL 2 INTRA-BACTERIAL NICHE OF PREDATORY BDELLOVIBRIO AND INCREASE JRNL TITL 3 POPULATION FITNESS. JRNL REF PLOS PATHOG. V. 8 02524 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22346754 JRNL DOI 10.1371/JOURNAL.PPAT.1002524 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 127948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1648 - 4.5028 0.96 4125 226 0.1762 0.1964 REMARK 3 2 4.5028 - 3.5751 0.99 4168 225 0.1360 0.1417 REMARK 3 3 3.5751 - 3.1234 1.00 4154 219 0.1588 0.1606 REMARK 3 4 3.1234 - 2.8380 1.00 4159 221 0.1629 0.1731 REMARK 3 5 2.8380 - 2.6346 1.00 4137 196 0.1563 0.1619 REMARK 3 6 2.6346 - 2.4793 1.00 4131 220 0.1521 0.1630 REMARK 3 7 2.4793 - 2.3552 1.00 4110 220 0.1433 0.1710 REMARK 3 8 2.3552 - 2.2527 1.00 4124 202 0.1477 0.1601 REMARK 3 9 2.2527 - 2.1660 1.00 4110 221 0.1516 0.1833 REMARK 3 10 2.1660 - 2.0912 1.00 4101 211 0.1489 0.1487 REMARK 3 11 2.0912 - 2.0259 1.00 4122 216 0.1553 0.1914 REMARK 3 12 2.0259 - 1.9680 1.00 4098 233 0.1530 0.2009 REMARK 3 13 1.9680 - 1.9162 1.00 4099 211 0.1483 0.1611 REMARK 3 14 1.9162 - 1.8694 1.00 4080 205 0.1456 0.1657 REMARK 3 15 1.8694 - 1.8269 1.00 4130 219 0.1422 0.1762 REMARK 3 16 1.8269 - 1.7880 1.00 4077 229 0.1510 0.1726 REMARK 3 17 1.7880 - 1.7523 1.00 4079 218 0.1496 0.1631 REMARK 3 18 1.7523 - 1.7192 1.00 4103 216 0.1540 0.1892 REMARK 3 19 1.7192 - 1.6885 1.00 4113 199 0.1651 0.1954 REMARK 3 20 1.6885 - 1.6599 1.00 4077 206 0.1759 0.1960 REMARK 3 21 1.6599 - 1.6331 1.00 4033 240 0.1852 0.2166 REMARK 3 22 1.6331 - 1.6080 1.00 4118 202 0.1955 0.2110 REMARK 3 23 1.6080 - 1.5843 1.00 4080 228 0.2209 0.2414 REMARK 3 24 1.5843 - 1.5620 1.00 4107 206 0.2451 0.2537 REMARK 3 25 1.5620 - 1.5409 1.00 4049 200 0.2626 0.2595 REMARK 3 26 1.5409 - 1.5209 0.99 4051 213 0.2874 0.3023 REMARK 3 27 1.5209 - 1.5019 0.97 3953 215 0.3079 0.3036 REMARK 3 28 1.5019 - 1.4838 0.93 3725 234 0.3227 0.3605 REMARK 3 29 1.4838 - 1.4665 0.89 3664 196 0.3452 0.3473 REMARK 3 30 1.4665 - 1.4500 0.84 3443 181 0.3560 0.3653 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70110 REMARK 3 B22 (A**2) : 1.70110 REMARK 3 B33 (A**2) : -3.40230 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 3304 REMARK 3 ANGLE : 1.918 4483 REMARK 3 CHIRALITY : 0.149 504 REMARK 3 PLANARITY : 0.011 563 REMARK 3 DIHEDRAL : 13.964 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 1:54) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0215 59.3035 37.0202 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.1436 REMARK 3 T33: 0.1261 T12: 0.0263 REMARK 3 T13: 0.0003 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.4615 L22: 0.1486 REMARK 3 L33: 0.4828 L12: -0.0724 REMARK 3 L13: 0.3406 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.0655 S13: -0.1217 REMARK 3 S21: 0.0121 S22: 0.0060 S23: 0.0311 REMARK 3 S31: 0.1246 S32: 0.0135 S33: -0.0690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 55:158) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9254 83.5382 20.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0561 REMARK 3 T33: 0.0884 T12: 0.0076 REMARK 3 T13: -0.0056 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5088 L22: 0.3931 REMARK 3 L33: 0.5362 L12: -0.3251 REMARK 3 L13: 0.1869 L23: -0.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.0026 S13: 0.0016 REMARK 3 S21: -0.0600 S22: -0.0004 S23: 0.0458 REMARK 3 S31: -0.0621 S32: 0.0088 S33: -0.0264 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 159:193) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0043 85.5432 22.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1075 REMARK 3 T33: 0.1609 T12: 0.0125 REMARK 3 T13: -0.0041 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.5051 L22: 0.1623 REMARK 3 L33: 0.8278 L12: -0.1123 REMARK 3 L13: 0.2455 L23: -0.3673 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.0618 S13: -0.1282 REMARK 3 S21: -0.0458 S22: 0.1137 S23: 0.1011 REMARK 3 S31: -0.0125 S32: -0.1191 S33: -0.1378 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 194:258) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0576 90.9052 20.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.0566 REMARK 3 T33: 0.0992 T12: 0.0145 REMARK 3 T13: -0.0023 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.8589 L22: 0.3601 REMARK 3 L33: 0.7084 L12: -0.0316 REMARK 3 L13: 0.1958 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0056 S13: 0.0518 REMARK 3 S21: -0.0679 S22: 0.0092 S23: 0.0276 REMARK 3 S31: -0.1208 S32: 0.0150 S33: 0.0009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 259:371) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8852 67.9477 28.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0872 REMARK 3 T33: 0.0972 T12: 0.0160 REMARK 3 T13: -0.0141 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2719 L22: 0.5065 REMARK 3 L33: 0.9456 L12: -0.3043 REMARK 3 L13: 0.1422 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0356 S13: -0.0483 REMARK 3 S21: -0.0135 S22: 0.0097 S23: 0.0637 REMARK 3 S31: 0.1064 S32: -0.0285 S33: -0.0345 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain A and resid 372:402) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2643 62.6428 44.4039 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.2037 REMARK 3 T33: 0.1375 T12: -0.0034 REMARK 3 T13: 0.0024 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.3797 L22: 0.1133 REMARK 3 L33: 1.0156 L12: 0.0279 REMARK 3 L13: 0.6220 L23: 0.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.2819 S13: -0.0481 REMARK 3 S21: 0.0447 S22: 0.0168 S23: 0.0613 REMARK 3 S31: 0.1811 S32: -0.2321 S33: -0.0334 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB069539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 554908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 108.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 0.2M AMMONIUM SULPHATE, 30% REMARK 280 W/V PEG 5000MME 16% V/V GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.12333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.24667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.24667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 439 REMARK 465 THR A 440 REMARK 465 ILE A 441 REMARK 465 THR A 442 REMARK 465 THR A 443 REMARK 465 GLU A 444 REMARK 465 LYS A 445 REMARK 465 LYS A 446 REMARK 465 LEU A 447 REMARK 465 GLU A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 413 O HOH A 1027 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 246 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -147.54 52.55 REMARK 500 SER A 103 -156.63 -104.94 REMARK 500 GLU A 137 -80.45 -82.04 REMARK 500 ALA A 336 -40.69 69.75 REMARK 500 ALA A 340 56.00 -96.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TAU A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 505 DBREF 3V39 A 37 446 UNP Q6MHT0 Q6MHT0_BDEBA 37 446 SEQADV 3V39 MET A 37 UNP Q6MHT0 ALA 37 ENGINEERED MUTATION SEQADV 3V39 LEU A 447 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 GLU A 448 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 449 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 450 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 451 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 452 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 453 UNP Q6MHT0 EXPRESSION TAG SEQADV 3V39 HIS A 454 UNP Q6MHT0 EXPRESSION TAG SEQRES 1 A 418 MET LYS VAL TYR LEU ASN SER MET CYS HIS MET ALA ALA SEQRES 2 A 418 ASN SER LYS THR GLN GLN ILE GLN GLY ASP ASP ASN LYS SEQRES 3 A 418 ASP ASP LYS PHE PRO LEU ALA SER ILE SER LYS VAL VAL SEQRES 4 A 418 THR THR LEU TRP ALA VAL ASP ARG LEU GLY PRO ASP TYR SEQRES 5 A 418 ARG PHE LYS THR LYS LEU HIS VAL THR PRO THR ALA ASN SEQRES 6 A 418 GLY SER TYR ASP ILE HIS ILE GLU GLY SER ARG ASP PRO SEQRES 7 A 418 LEU PHE GLY ARG ASN MET SER TYR PHE LEU ILE SER GLU SEQRES 8 A 418 LEU ASN ARG MET LYS ILE THR LYS ILE GLU LYS LEU THR SEQRES 9 A 418 PHE ASP GLU ASN PHE LEU LEU ALA TRP LEU ALA GLU GLU SEQRES 10 A 418 LYS PRO MET ILE GLY GLY THR THR PRO LYS TYR ASP THR SEQRES 11 A 418 VAL GLU GLN GLN ALA SER ILE VAL ARG ALA THR LEU THR SEQRES 12 A 418 SER SER PHE ALA THR ALA ILE SER PRO GLY TYR TYR THR SEQRES 13 A 418 ILE LEU LYS THR LYS ALA ALA ARG ILE GLY VAL GLN MET SEQRES 14 A 418 SER ASN ARG PRO LYS ILE ASP VAL ARG THR ILE SER PHE SEQRES 15 A 418 VAL LYS LYS ALA GLU PHE GLN LYS ASN GLU LYS SER THR SEQRES 16 A 418 THR MET VAL LEU MET SER ALA PRO LEU LYS THR ILE LEU SEQRES 17 A 418 LYS ARG MET ASN ASN GLN SER ASN ASN TYR ILE ALA ASP SEQRES 18 A 418 ASN LEU TYR TRP ASN LEU GLY GLY THR GLU ALA PHE ASN SEQRES 19 A 418 ALA TYR ILE ALA GLY LYS MET GLN ALA ASP THR SER ASP SEQRES 20 A 418 ILE GLU PHE HIS ASN GLY SER GLY ASN ASN GLU GLY SER SEQRES 21 A 418 VAL ALA LYS PRO VAL TYR ASN GLU ALA THR CYS GLU MET SEQRES 22 A 418 MET ILE LYS VAL LEU TYR SER LEU ASP LYS SER LEU SER SEQRES 23 A 418 ALA LYS GLY TYR ASP LEU SER ASP VAL MET ALA VAL ALA SEQRES 24 A 418 ALA LYS ASP LYS ALA SER THR VAL GLY SER TYR GLY GLY SEQRES 25 A 418 VAL MET ALA GLY SER THR THR ALA LYS THR GLY SER VAL SEQRES 26 A 418 ASN LYS ALA LYS THR LEU MET GLY SER VAL SER THR LYS SEQRES 27 A 418 ASN GLY GLU ILE TYR PHE ALA VAL LEU MET HIS THR ASP SEQRES 28 A 418 TYR ASP LYS SER ARG SER ASP TRP GLY VAL ALA SER GLN SEQRES 29 A 418 GLN ILE LYS ASN LYS VAL SER GLN LEU ILE ASN GLN ASN SEQRES 30 A 418 GLY GLY PRO LYS ALA ILE LYS TYR THR GLU GLN LEU PRO SEQRES 31 A 418 LEU PRO PHE ASP LYS TYR SER TYR LEU THR LYS ALA ASN SEQRES 32 A 418 THR ILE THR THR GLU LYS LYS LEU GLU HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS HET TAU A 501 6 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET PGE A 505 10 HETNAM TAU 2-AMINOETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 TAU C2 H7 N O3 S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 PGE C6 H14 O4 FORMUL 7 HOH *441(H2 O) HELIX 1 1 ILE A 71 GLY A 85 1 15 HELIX 2 2 GLY A 117 MET A 131 1 15 HELIX 3 3 THR A 166 SER A 181 1 16 HELIX 4 4 SER A 187 ILE A 201 1 15 HELIX 5 5 LYS A 220 PHE A 224 5 5 HELIX 6 6 PRO A 239 SER A 251 1 13 HELIX 7 7 ASN A 252 LEU A 263 1 12 HELIX 8 8 GLY A 264 GLN A 278 1 15 HELIX 9 9 CYS A 307 ALA A 323 1 17 HELIX 10 10 ASP A 327 VAL A 331 5 5 HELIX 11 11 GLY A 347 ALA A 351 5 5 HELIX 12 12 GLY A 396 ASN A 413 1 18 SHEET 1 A 5 GLN A 57 GLY A 58 0 SHEET 2 A 5 LYS A 38 ALA A 48 -1 N HIS A 46 O GLN A 57 SHEET 3 A 5 GLY A 376 ASP A 387 -1 O HIS A 385 N TYR A 40 SHEET 4 A 5 ALA A 364 THR A 373 -1 N LEU A 367 O VAL A 382 SHEET 5 A 5 THR A 354 VAL A 361 -1 N VAL A 361 O ALA A 364 SHEET 1 B 3 LYS A 65 PRO A 67 0 SHEET 2 B 3 GLU A 304 THR A 306 -1 O ALA A 305 N PHE A 66 SHEET 3 B 3 ILE A 284 GLU A 285 -1 N GLU A 285 O GLU A 304 SHEET 1 C 6 ASP A 212 PHE A 218 0 SHEET 2 C 6 LYS A 135 PHE A 141 1 N ILE A 136 O ASP A 212 SHEET 3 C 6 TYR A 104 GLU A 109 1 N TYR A 104 O GLU A 137 SHEET 4 C 6 LYS A 91 PRO A 98 -1 N LYS A 93 O GLU A 109 SHEET 5 C 6 THR A 231 MET A 236 -1 O MET A 233 N LEU A 94 SHEET 6 C 6 THR A 436 LYS A 437 -1 O THR A 436 N VAL A 234 SSBOND 1 CYS A 45 CYS A 307 1555 1555 2.24 LINK OG SER A 70 S TAU A 501 1555 1555 1.52 CISPEP 1 LYS A 154 PRO A 155 0 6.43 SITE 1 AC1 11 ALA A 69 SER A 70 SER A 251 ASN A 253 SITE 2 AC1 11 ASN A 292 GLY A 359 SER A 360 HOH A 662 SITE 3 AC1 11 HOH A 680 HOH A 946 HOH A1014 SITE 1 AC2 5 LYS A 93 HIS A 95 LYS A 226 THR A 232 SITE 2 AC2 5 HOH A 985 SITE 1 AC3 7 LYS A 154 LYS A 163 TYR A 260 GLY A 265 SITE 2 AC3 7 THR A 266 HOH A 784 HOH A 806 SITE 1 AC4 8 ARG A 118 TRP A 149 SER A 187 TYR A 190 SITE 2 AC4 8 HOH A 636 HOH A 957 HOH A 964 HOH A 965 SITE 1 AC5 12 ASN A 119 ILE A 193 LYS A 197 ARG A 246 SITE 2 AC5 12 ALA A 340 LEU A 425 PRO A 426 HOH A 628 SITE 3 AC5 12 HOH A 691 HOH A 721 HOH A 741 HOH A 752 CRYST1 125.240 125.240 81.370 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007985 0.004610 0.000000 0.00000 SCALE2 0.000000 0.009220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012290 0.00000