HEADER LIGASE 13-DEC-11 3V3L TITLE CRYSTAL STRUCTURE OF HUMAN RNF146 WWE DOMAIN IN COMPLEX WITH ISO- TITLE 2 ADPRIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF146; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: WWE DOMAIN RESIDUES 100-184; COMPND 5 SYNONYM: DACTYLIDIN, RING FINGER PROTEIN 146; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF146; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,Z.CHENG,W.XU REVDAT 2 06-NOV-24 3V3L 1 REMARK LINK REVDAT 1 15-FEB-12 3V3L 0 JRNL AUTH Z.WANG,G.A.MICHAUD,Z.CHENG,Y.ZHANG,T.R.HINDS,E.FAN,F.CONG, JRNL AUTH 2 W.XU JRNL TITL RECOGNITION OF THE ISO-ADP-RIBOSE MOIETY IN POLY(ADP-RIBOSE) JRNL TITL 2 BY WWE DOMAINS SUGGESTS A GENERAL MECHANISM FOR JRNL TITL 3 POLY(ADP-RIBOSYL)ATION-DEPENDENT UBIQUITINATION. JRNL REF GENES DEV. V. 26 235 2012 JRNL REFN ISSN 0890-9369 JRNL PMID 22267412 JRNL DOI 10.1101/GAD.182618.111 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1648 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1176 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2245 ; 1.573 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2813 ; 0.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;31.121 ;22.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;15.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 215 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1866 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 392 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 898 ; 3.406 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 372 ; 1.390 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1443 ; 5.280 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 750 ; 5.782 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 800 ; 8.227 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2824 ; 1.795 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0265 64.8351 83.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0088 REMARK 3 T33: 0.0064 T12: -0.0045 REMARK 3 T13: 0.0018 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.4236 L22: 0.7695 REMARK 3 L33: 1.0770 L12: 0.2975 REMARK 3 L13: -0.0120 L23: -0.2741 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: 0.0416 S13: -0.0001 REMARK 3 S21: -0.0615 S22: 0.0245 S23: -0.0045 REMARK 3 S31: -0.0203 S32: -0.0013 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 183 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8772 41.7574 86.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0182 REMARK 3 T33: 0.0074 T12: -0.0164 REMARK 3 T13: 0.0062 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5410 L22: 0.9528 REMARK 3 L33: 0.8447 L12: 0.1592 REMARK 3 L13: -0.4700 L23: 0.0874 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0204 S13: 0.0124 REMARK 3 S21: 0.1131 S22: -0.0733 S23: 0.0465 REMARK 3 S31: 0.0185 S32: -0.0234 S33: 0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PEG 400, 100 MM TRIS HCL PH 8.0, REMARK 280 10 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.82367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.64733 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 97.64733 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.82367 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 91 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 188 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 184 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 196 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 99 REMARK 465 ASN A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 126 O HOH B 187 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 30 O HOH B 185 6566 1.89 REMARK 500 O HOH B 63 O HOH B 79 6566 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 137 CG - SE - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 26.44 -143.87 REMARK 500 ASN A 111 35.20 -147.58 REMARK 500 ASN B 111 45.09 -148.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V3L A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V3L B 1 DBREF 3V3L A 99 183 UNP Q9NTX7 RN146_HUMAN 100 184 DBREF 3V3L B 99 183 UNP Q9NTX7 RN146_HUMAN 100 184 SEQRES 1 A 85 GLY ASN GLY GLU TYR ALA TRP TYR TYR GLU GLY ARG ASN SEQRES 2 A 85 GLY TRP TRP GLN TYR ASP GLU ARG THR SER ARG GLU LEU SEQRES 3 A 85 GLU ASP ALA PHE SER LYS GLY LYS LYS ASN THR GLU MSE SEQRES 4 A 85 LEU ILE ALA GLY PHE LEU TYR VAL ALA ASP LEU GLU ASN SEQRES 5 A 85 MSE VAL GLN TYR ARG ARG ASN GLU HIS GLY ARG ARG ARG SEQRES 6 A 85 LYS ILE LYS ARG ASP ILE ILE ASP ILE PRO LYS LYS GLY SEQRES 7 A 85 VAL ALA GLY LEU ARG LEU ASP SEQRES 1 B 85 GLY ASN GLY GLU TYR ALA TRP TYR TYR GLU GLY ARG ASN SEQRES 2 B 85 GLY TRP TRP GLN TYR ASP GLU ARG THR SER ARG GLU LEU SEQRES 3 B 85 GLU ASP ALA PHE SER LYS GLY LYS LYS ASN THR GLU MSE SEQRES 4 B 85 LEU ILE ALA GLY PHE LEU TYR VAL ALA ASP LEU GLU ASN SEQRES 5 B 85 MSE VAL GLN TYR ARG ARG ASN GLU HIS GLY ARG ARG ARG SEQRES 6 B 85 LYS ILE LYS ARG ASP ILE ILE ASP ILE PRO LYS LYS GLY SEQRES 7 B 85 VAL ALA GLY LEU ARG LEU ASP MODRES 3V3L MSE A 137 MET SELENOMETHIONINE MODRES 3V3L MSE A 151 MET SELENOMETHIONINE MODRES 3V3L MSE B 137 MET SELENOMETHIONINE MODRES 3V3L MSE B 151 MET SELENOMETHIONINE HET MSE A 137 8 HET MSE A 151 8 HET MSE B 137 8 HET MSE B 151 8 HET V3L A 1 36 HET V3L B 1 36 HETNAM MSE SELENOMETHIONINE HETNAM V3L 2'-O-(5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSYL)ADENOSINE 5'- HETNAM 2 V3L (DIHYDROGEN PHOSPHATE) FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 V3L 2(C15 H23 N5 O14 P2) FORMUL 5 HOH *124(H2 O) HELIX 1 1 ASP A 117 LYS A 130 1 14 HELIX 2 2 ASP B 117 LYS B 130 1 14 SHEET 1 A 6 TRP A 113 GLN A 115 0 SHEET 2 A 6 TYR A 103 GLU A 108 -1 N TYR A 107 O TRP A 114 SHEET 3 A 6 ARG A 163 ILE A 169 -1 O LYS A 166 N TYR A 106 SHEET 4 A 6 VAL A 152 ARG A 155 -1 N GLN A 153 O ARG A 163 SHEET 5 A 6 PHE A 142 ASP A 147 -1 N ASP A 147 O VAL A 152 SHEET 6 A 6 ASN A 134 ILE A 139 -1 N ILE A 139 O PHE A 142 SHEET 1 B 2 GLY A 176 VAL A 177 0 SHEET 2 B 2 LEU A 180 ARG A 181 -1 O LEU A 180 N VAL A 177 SHEET 1 C 6 GLY B 112 GLN B 115 0 SHEET 2 C 6 TYR B 103 GLY B 109 -1 N GLY B 109 O GLY B 112 SHEET 3 C 6 ARG B 163 ILE B 169 -1 O ASP B 168 N ALA B 104 SHEET 4 C 6 VAL B 152 ARG B 155 -1 N GLN B 153 O ARG B 163 SHEET 5 C 6 PHE B 142 ASP B 147 -1 N ASP B 147 O VAL B 152 SHEET 6 C 6 ASN B 134 ILE B 139 -1 N ILE B 139 O PHE B 142 SHEET 1 D 2 GLY B 176 VAL B 177 0 SHEET 2 D 2 LEU B 180 ARG B 181 -1 O LEU B 180 N VAL B 177 LINK C GLU A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N LEU A 138 1555 1555 1.33 LINK C ASN A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N VAL A 152 1555 1555 1.33 LINK C GLU B 136 N MSE B 137 1555 1555 1.32 LINK C MSE B 137 N ALEU B 138 1555 1555 1.33 LINK C MSE B 137 N BLEU B 138 1555 1555 1.33 LINK C ASN B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N VAL B 152 1555 1555 1.33 SITE 1 AC1 25 HOH A 3 HOH A 7 HOH A 9 HOH A 10 SITE 2 AC1 25 HOH A 14 HOH A 15 HOH A 16 HOH A 22 SITE 3 AC1 25 TYR A 107 GLY A 109 ARG A 110 TRP A 114 SITE 4 AC1 25 TYR A 116 ILE A 139 TYR A 144 GLN A 153 SITE 5 AC1 25 ARG A 161 ARG A 163 LYS A 175 GLY A 179 SITE 6 AC1 25 HOH A 184 HOH A 190 V3L B 1 ARG B 110 SITE 7 AC1 25 ARG B 161 SITE 1 AC2 26 V3L A 1 ARG A 110 ARG A 161 HOH A 184 SITE 2 AC2 26 HOH A 207 HOH B 4 HOH B 5 HOH B 6 SITE 3 AC2 26 HOH B 11 HOH B 25 HOH B 31 HOH B 34 SITE 4 AC2 26 HOH B 96 TYR B 107 GLY B 109 ARG B 110 SITE 5 AC2 26 TRP B 114 TYR B 116 ILE B 139 TYR B 144 SITE 6 AC2 26 GLN B 153 ARG B 161 ARG B 163 LYS B 175 SITE 7 AC2 26 GLY B 179 HOH B 188 CRYST1 55.343 55.343 146.471 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018069 0.010432 0.000000 0.00000 SCALE2 0.000000 0.020864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006827 0.00000