HEADER TRANSCRIPTION/ANTAGONIST 14-DEC-11 3V3Q TITLE CRYSTAL STRUCTURE OF HUMAN NUR77 LIGAND-BINDING DOMAIN IN COMPLEX WITH TITLE 2 ETHYL 2-[2,3,4 TRIMETHOXY-6(1-OCTANOYL)PHENYL]ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINGDING DOMAIN, UNP RESIDUES 351-598; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1, NUCLEAR HORMONE RECEPTOR COMPND 6 NUR/77, NUR77, ORPHAN NUCLEAR RECEPTOR HMR, ORPHAN NUCLEAR RECEPTOR COMPND 7 TR3, ST-59, TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A1, GFRP1, HMR, NAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ORPHAN NUCLEAR RECEPTOR, PROTEIN-ANTAGONIST COMPLEX, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHANG,C.SHI,K.YANG,Y.CHEN,Y.ZHAN,Q.WU,T.LIN REVDAT 3 08-NOV-23 3V3Q 1 REMARK SEQADV REVDAT 2 10-JUL-13 3V3Q 1 JRNL REVDAT 1 26-SEP-12 3V3Q 0 JRNL AUTH Y.ZHAN,Y.CHEN,Q.ZHANG,J.ZHUANG,M.TIAN,H.CHEN,L.ZHANG, JRNL AUTH 2 H.ZHANG,J.HE,W.WANG,R.WU,Y.WANG,C.SHI,K.YANG,A.LI,Y.XIN, JRNL AUTH 3 T.Y.LI,J.Y.YANG,Z.ZHENG,C.YU,S.LIN,C.CHANG,P.HUANG,T.LIN, JRNL AUTH 4 Q.WU JRNL TITL THE ORPHAN NUCLEAR RECEPTOR NUR77 REGULATES LKB1 JRNL TITL 2 LOCALIZATION AND ACTIVATES AMPK JRNL REF NAT.CHEM.BIOL. V. 8 897 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22983157 JRNL DOI 10.1038/NCHEMBIO.1069 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 33113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3926 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5311 ; 1.937 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;38.739 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;19.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;22.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2903 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3V3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AUTOMAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34891 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 48.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3V3E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 6000, PH 4.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.12100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.59650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.59650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.12100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 SER A 29 REMARK 465 GLY A 213 REMARK 465 GLU A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 MET B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 LEU B 268 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 191 OE1 GLU B 194 1.86 REMARK 500 O HOH A 422 O HOH A 431 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 207 CG HIS A 207 CD2 0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 59 CB - CG - CD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 232 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS B 235 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 144.74 -170.45 REMARK 500 VAL A 211 63.66 -105.07 REMARK 500 SER B 54 -6.96 -56.31 REMARK 500 LEU B 61 -174.13 70.44 REMARK 500 HIS B 63 -162.99 -162.53 REMARK 500 PRO B 215 -86.18 -24.12 REMARK 500 GLN B 216 29.48 42.89 REMARK 500 PRO B 266 26.14 -70.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN NUR77 LIGAND-BINDING DOMAIN DBREF 3V3Q A 20 267 UNP P22736 NR4A1_HUMAN 351 598 DBREF 3V3Q B 20 267 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 3V3Q MET A 19 UNP P22736 EXPRESSION TAG SEQADV 3V3Q LEU A 268 UNP P22736 EXPRESSION TAG SEQADV 3V3Q GLU A 269 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 270 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 271 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 272 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 273 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 274 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS A 275 UNP P22736 EXPRESSION TAG SEQADV 3V3Q MET B 19 UNP P22736 EXPRESSION TAG SEQADV 3V3Q LEU B 268 UNP P22736 EXPRESSION TAG SEQADV 3V3Q GLU B 269 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 270 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 271 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 272 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 273 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 274 UNP P22736 EXPRESSION TAG SEQADV 3V3Q HIS B 275 UNP P22736 EXPRESSION TAG SEQRES 1 A 257 MET SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 A 257 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 A 257 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 A 257 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 A 257 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 A 257 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 A 257 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 A 257 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 A 257 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 A 257 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 A 257 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 A 257 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 A 257 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 A 257 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 A 257 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 A 257 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 A 257 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 A 257 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 A 257 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 A 257 PRO PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 257 MET SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 B 257 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 B 257 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 B 257 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 B 257 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 B 257 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 B 257 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 B 257 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 B 257 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 B 257 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 B 257 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 B 257 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 B 257 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 B 257 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 B 257 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 B 257 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 B 257 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 B 257 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 B 257 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 B 257 PRO PHE LEU GLU HIS HIS HIS HIS HIS HIS HET TMY A 301 27 HET TMY A 302 27 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL B 301 6 HET NA B 302 1 HETNAM TMY ETHYL (2,3,4-TRIMETHOXY-6-OCTANOYLPHENYL)ACETATE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TMY 2(C21 H32 O6) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 NA NA 1+ FORMUL 10 HOH *397(H2 O) HELIX 1 1 ALA A 31 ASP A 43 1 13 HELIX 2 2 SER A 47 LEU A 51 5 5 HELIX 3 3 ASP A 68 LYS A 92 1 25 HELIX 4 4 GLY A 95 LEU A 99 5 5 HELIX 5 5 SER A 100 SER A 124 1 25 HELIX 6 6 LYS A 125 GLU A 128 5 4 HELIX 7 7 ARG A 141 GLY A 149 1 9 HELIX 8 8 GLY A 149 SER A 164 1 16 HELIX 9 9 ASP A 168 ILE A 181 1 14 HELIX 10 10 GLU A 189 VAL A 211 1 23 HELIX 11 11 SER A 219 GLY A 226 1 8 HELIX 12 12 LYS A 227 ASP A 249 1 23 HELIX 13 13 PRO A 254 LEU A 265 1 12 HELIX 14 14 ALA B 31 SER B 44 1 14 HELIX 15 15 SER B 47 LEU B 51 5 5 HELIX 16 16 ASP B 68 LYS B 92 1 25 HELIX 17 17 GLY B 95 LEU B 99 5 5 HELIX 18 18 SER B 100 SER B 124 1 25 HELIX 19 19 LYS B 125 GLU B 128 5 4 HELIX 20 20 ARG B 141 GLY B 149 1 9 HELIX 21 21 ASP B 150 LEU B 166 1 17 HELIX 22 22 ASP B 168 ILE B 181 1 14 HELIX 23 23 GLU B 189 VAL B 211 1 23 HELIX 24 24 ALA B 218 GLY B 226 1 9 HELIX 25 25 GLY B 226 ASP B 249 1 24 HELIX 26 26 PRO B 254 LEU B 265 1 12 SHEET 1 A 2 LYS A 130 ILE A 132 0 SHEET 2 A 2 VAL A 138 HIS A 140 -1 O LEU A 139 N LEU A 131 SHEET 1 B 2 LYS B 130 ILE B 132 0 SHEET 2 B 2 VAL B 138 HIS B 140 -1 O LEU B 139 N LEU B 131 LINK OG SER B 82 NA NA B 302 1555 1555 2.77 CISPEP 1 ASP A 27 ALA A 28 0 2.55 CISPEP 2 PRO B 30 ALA B 31 0 -16.54 CISPEP 3 LEU B 61 PRO B 62 0 -3.79 CISPEP 4 GLY B 65 LYS B 66 0 -2.15 CISPEP 5 GLY B 213 GLU B 214 0 -9.95 SITE 1 AC1 15 GLU A 109 SER A 110 ALA A 111 PHE A 112 SITE 2 AC1 15 LEU A 113 GLU A 114 ARG A 232 CYS A 235 SITE 3 AC1 15 THR A 236 LEU A 239 ILE A 260 THR A 264 SITE 4 AC1 15 HOH A 544 HOH A 547 HOH A 603 SITE 1 AC2 17 HIS A 41 LEU A 42 PRO A 46 TYR A 122 SITE 2 AC2 17 ARG A 123 LYS A 125 LEU A 162 HIS A 163 SITE 3 AC2 17 LEU A 166 VAL A 167 VAL A 169 GOL A 304 SITE 4 AC2 17 HOH A 438 HOH A 521 HOH A 575 HOH A 583 SITE 5 AC2 17 HOH A 599 SITE 1 AC3 3 LEU A 178 HOH A 591 HOH A 595 SITE 1 AC4 8 HIS A 41 SER A 44 GLY A 45 PRO A 46 SITE 2 AC4 8 ARG A 119 ARG A 123 TMY A 302 HOH A 583 SITE 1 AC5 6 GLY A 95 GLU A 98 ARG A 192 GLU A 195 SITE 2 AC5 6 GLU B 189 HOH B 517 SITE 1 AC6 7 HIS B 41 GLY B 45 PRO B 46 ARG B 123 SITE 2 AC6 7 HOH B 574 HOH B 575 HOH B 578 SITE 1 AC7 4 SER B 82 ARG B 119 ARG B 123 CYS B 134 CRYST1 74.242 76.773 129.193 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013469 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007740 0.00000