HEADER LYASE 14-DEC-11 3V3W TITLE CRYSTAL STRUCTURE OF AN ENOLASE FROM THE SOIL BACTERIUM CELLVIBRIO TITLE 2 JAPONICUS (TARGET EFI-502161) WITH BOUND MG AND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: STARVATION SENSING PROTEIN RSPA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_TAXID: 498211; SOURCE 4 STRAIN: UEDA107; SOURCE 5 GENE: RSPA, CJA_3069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOLASE, ENZYME FUNCTION INITIATIVE, EFI, LYASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,S.R.WASSERMAN,L.L.MORISCO,S.SOJITRA, AUTHOR 2 R.SEIDEL,B.HILLERICH,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS, AUTHOR 3 J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 3 13-SEP-23 3V3W 1 REMARK SEQADV LINK REVDAT 2 22-FEB-12 3V3W 1 REVDAT 1 11-JAN-12 3V3W 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,S.R.WASSERMAN,L.L.MORISCO, JRNL AUTH 2 S.SOJITRA,R.SEIDEL,B.HILLERICH,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, JRNL AUTH 4 J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN ENOLASE FROM THE SOIL BACTERIUM JRNL TITL 2 CELLVIBRIO JAPONICUS (TARGET EFI-502161) WITH BOUND MG AND JRNL TITL 3 GLYCEROL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 85181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1147 - 4.3467 1.00 2877 170 0.1620 0.1549 REMARK 3 2 4.3467 - 3.4514 1.00 2791 143 0.1236 0.1207 REMARK 3 3 3.4514 - 3.0155 1.00 2762 138 0.1276 0.1564 REMARK 3 4 3.0155 - 2.7399 1.00 2737 139 0.1329 0.1559 REMARK 3 5 2.7399 - 2.5436 1.00 2722 140 0.1420 0.1461 REMARK 3 6 2.5436 - 2.3937 1.00 2735 141 0.1333 0.1552 REMARK 3 7 2.3937 - 2.2739 1.00 2707 142 0.1245 0.1430 REMARK 3 8 2.2739 - 2.1749 1.00 2686 153 0.1236 0.1471 REMARK 3 9 2.1749 - 2.0912 1.00 2697 146 0.1253 0.1382 REMARK 3 10 2.0912 - 2.0190 1.00 2681 169 0.1308 0.1409 REMARK 3 11 2.0190 - 1.9559 1.00 2658 163 0.1361 0.1526 REMARK 3 12 1.9559 - 1.9000 1.00 2714 130 0.1312 0.1536 REMARK 3 13 1.9000 - 1.8500 1.00 2680 132 0.1304 0.1345 REMARK 3 14 1.8500 - 1.8049 1.00 2692 142 0.1314 0.1620 REMARK 3 15 1.8049 - 1.7638 1.00 2659 145 0.1266 0.1418 REMARK 3 16 1.7638 - 1.7263 1.00 2712 132 0.1271 0.1373 REMARK 3 17 1.7263 - 1.6918 1.00 2665 149 0.1331 0.1657 REMARK 3 18 1.6918 - 1.6599 1.00 2678 147 0.1347 0.1636 REMARK 3 19 1.6599 - 1.6302 1.00 2655 148 0.1301 0.1469 REMARK 3 20 1.6302 - 1.6026 1.00 2673 139 0.1312 0.1759 REMARK 3 21 1.6026 - 1.5767 1.00 2670 137 0.1362 0.1660 REMARK 3 22 1.5767 - 1.5525 1.00 2675 140 0.1415 0.1747 REMARK 3 23 1.5525 - 1.5296 1.00 2672 143 0.1489 0.1633 REMARK 3 24 1.5296 - 1.5081 1.00 2663 150 0.1561 0.1712 REMARK 3 25 1.5081 - 1.4877 1.00 2688 126 0.1637 0.1932 REMARK 3 26 1.4877 - 1.4684 1.00 2671 138 0.1608 0.1904 REMARK 3 27 1.4684 - 1.4500 1.00 2670 128 0.1740 0.2007 REMARK 3 28 1.4500 - 1.4326 1.00 2697 126 0.1818 0.1865 REMARK 3 29 1.4326 - 1.4159 1.00 2672 134 0.1905 0.2155 REMARK 3 30 1.4159 - 1.4000 1.00 2661 131 0.1950 0.2062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57790 REMARK 3 B22 (A**2) : 0.57790 REMARK 3 B33 (A**2) : -1.15580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3358 REMARK 3 ANGLE : 1.732 4567 REMARK 3 CHIRALITY : 0.116 482 REMARK 3 PLANARITY : 0.011 589 REMARK 3 DIHEDRAL : 15.300 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:100) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5100 -40.2528 -0.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.0482 REMARK 3 T33: 0.0834 T12: 0.0282 REMARK 3 T13: -0.0132 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.4609 L22: 0.4067 REMARK 3 L33: 0.4490 L12: 0.0807 REMARK 3 L13: 0.0545 L23: -0.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0166 S13: -0.0906 REMARK 3 S21: -0.0428 S22: 0.0140 S23: -0.0330 REMARK 3 S31: 0.1577 S32: 0.0516 S33: -0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 101:160) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3498 -28.4189 25.7906 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.0946 REMARK 3 T33: 0.0902 T12: 0.0268 REMARK 3 T13: -0.0112 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.4917 L22: 0.6337 REMARK 3 L33: 1.6275 L12: -0.3687 REMARK 3 L13: -0.9678 L23: 0.2236 REMARK 3 S TENSOR REMARK 3 S11: -0.1161 S12: -0.1657 S13: -0.1444 REMARK 3 S21: 0.1335 S22: 0.0661 S23: 0.0899 REMARK 3 S31: 0.1917 S32: -0.0230 S33: 0.0388 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 161:201) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4793 -26.8084 28.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.0909 REMARK 3 T33: 0.0993 T12: 0.0236 REMARK 3 T13: -0.0234 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.1905 L22: 0.2656 REMARK 3 L33: 0.7257 L12: 0.5349 REMARK 3 L13: 0.5789 L23: 0.3065 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.0384 S13: -0.3928 REMARK 3 S21: 0.1010 S22: 0.0377 S23: -0.0857 REMARK 3 S31: 0.3611 S32: 0.1020 S33: -0.1601 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 202:402) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1725 -26.3622 15.1122 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0455 REMARK 3 T33: 0.0560 T12: 0.0124 REMARK 3 T13: -0.0149 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2714 L22: 0.3074 REMARK 3 L33: 0.3865 L12: -0.0622 REMARK 3 L13: -0.0094 L23: 0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0232 S13: -0.0534 REMARK 3 S21: 0.0149 S22: -0.0028 S23: -0.0087 REMARK 3 S31: 0.1147 S32: 0.0275 S33: -0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 87.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : 0.69400 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2QJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 5 MM DTT, 5 MM MGCL2; RESERVOIR (0.1M CHES: REMARK 280 NAOH PH 9.5, 30% PEG3000); CRYOPROTECTION (15% GLYCEROL), REMARK 280 SITTING DROP VAPOR DIFFUSION, TEMPERATURE 298K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.15100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.65000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.15100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.65000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.15100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.65000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.15100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.65000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.15100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.65000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.15100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.65000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.15100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.65000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.15100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.15100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 56280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 586 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 SER A 162 REMARK 465 THR A 163 REMARK 465 ASN A 164 REMARK 465 THR A 165 REMARK 465 LYS A 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 459 O HOH A 542 1.68 REMARK 500 O HOH A 455 O HOH A 576 1.75 REMARK 500 O HOH A 455 O HOH A 579 1.92 REMARK 500 O HOH A 748 O HOH A 793 1.96 REMARK 500 O HOH A 797 O HOH A 807 1.96 REMARK 500 O HOH A 421 O HOH A 833 1.98 REMARK 500 O HOH A 536 O HOH A 683 2.05 REMARK 500 O HOH A 828 O HOH A 832 2.05 REMARK 500 O HOH A 724 O HOH A 820 2.06 REMARK 500 OD1 ASP A 192 O HOH A 799 2.06 REMARK 500 ND2 ASN A 358 O HOH A 789 2.07 REMARK 500 O HOH A 772 O HOH A 832 2.09 REMARK 500 O HOH A 446 O HOH A 769 2.11 REMARK 500 O HOH A 722 O HOH A 769 2.14 REMARK 500 O HOH A 527 O HOH A 542 2.14 REMARK 500 OE1 GLU A 395 O HOH A 802 2.17 REMARK 500 O HOH A 724 O HOH A 776 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 439 O HOH A 439 8555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 -48.75 -131.15 REMARK 500 TYR A 75 -53.26 81.34 REMARK 500 ARG A 78 -164.85 68.36 REMARK 500 HIS A 213 7.36 81.14 REMARK 500 ASN A 334 44.93 -90.99 REMARK 500 TRP A 400 -163.77 -112.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD2 REMARK 620 2 GLU A 236 OE2 87.5 REMARK 620 3 GLU A 262 OE1 170.4 85.9 REMARK 620 4 HOH A 414 O 86.5 96.8 87.5 REMARK 620 5 HOH A 496 O 94.4 172.2 93.1 91.0 REMARK 620 6 HOH A 527 O 92.5 92.1 94.5 171.0 80.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V4B RELATED DB: PDB REMARK 900 RELATED ID: EFI-502161 RELATED DB: TARGETTRACK DBREF 3V3W A 1 402 UNP B3PDB1 B3PDB1_CELJU 1 402 SEQADV 3V3W MET A -21 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -20 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -19 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -18 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -17 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -16 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W HIS A -15 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W SER A -14 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W SER A -13 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W GLY A -12 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W VAL A -11 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W ASP A -10 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W LEU A -9 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W GLY A -8 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W THR A -7 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W GLU A -6 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W ASN A -5 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W LEU A -4 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W TYR A -3 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W PHE A -2 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W GLN A -1 UNP B3PDB1 EXPRESSION TAG SEQADV 3V3W SER A 0 UNP B3PDB1 EXPRESSION TAG SEQRES 1 A 424 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 424 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS ILE VAL SEQRES 3 A 424 ASP ALA LYS VAL ILE VAL THR CYS PRO GLY ARG ASN PHE SEQRES 4 A 424 VAL THR LEU LYS ILE VAL THR ASP GLN GLY ILE TYR GLY SEQRES 5 A 424 ILE GLY ASP ALA THR LEU ASN GLY ARG GLU LYS SER VAL SEQRES 6 A 424 VAL SER TYR LEU GLU ASP TYR LEU ILE PRO VAL LEU ILE SEQRES 7 A 424 GLY ARG ASP PRO GLN GLN ILE GLU ASP ILE TRP GLN PHE SEQRES 8 A 424 PHE TYR ARG GLY ALA TYR TRP ARG ARG GLY PRO VAL GLY SEQRES 9 A 424 MET THR ALA LEU ALA ALA ILE ASP VAL ALA LEU TRP ASP SEQRES 10 A 424 ILE LYS ALA LYS LEU ALA ASN MET PRO LEU TYR GLN LEU SEQRES 11 A 424 LEU GLY GLY LYS SER ARG GLU ARG ILE LEU SER TYR THR SEQRES 12 A 424 HIS ALA ASN GLY LYS ASP LEU ASP SER THR LEU GLU ALA SEQRES 13 A 424 VAL ARG LYS ALA LYS ASP LYS GLY TYR LYS ALA ILE ARG SEQRES 14 A 424 VAL GLN CYS GLY ILE PRO GLY ILE ALA LYS THR TYR GLY SEQRES 15 A 424 VAL SER THR ASN THR LYS SER TYR GLU PRO ALA ASP ALA SEQRES 16 A 424 ASP LEU PRO SER VAL GLU VAL TRP SER THR GLU LYS TYR SEQRES 17 A 424 LEU ASN TYR ILE PRO ASP VAL PHE ALA ALA VAL ARG LYS SEQRES 18 A 424 GLU PHE GLY PRO ASP ILE HIS LEU LEU HIS ASP VAL HIS SEQRES 19 A 424 HIS ARG LEU THR PRO ILE GLU ALA ALA ARG LEU GLY LYS SEQRES 20 A 424 ALA LEU GLU PRO TYR HIS LEU PHE TRP MET GLU ASP ALA SEQRES 21 A 424 VAL PRO ALA GLU ASN GLN GLU SER PHE LYS LEU ILE ARG SEQRES 22 A 424 GLN HIS THR THR THR PRO LEU ALA VAL GLY GLU VAL PHE SEQRES 23 A 424 ASN SER ILE HIS ASP CYS ARG GLU LEU ILE GLN ASN GLN SEQRES 24 A 424 TRP ILE ASP TYR ILE ARG THR THR ILE VAL HIS ALA GLY SEQRES 25 A 424 GLY ILE SER GLN MET ARG ARG ILE ALA ASP PHE ALA SER SEQRES 26 A 424 LEU PHE HIS VAL ARG THR GLY PHE HIS GLY ALA THR ASP SEQRES 27 A 424 LEU SER PRO VAL CYS MET GLY ALA ALA LEU HIS PHE ASP SEQRES 28 A 424 TYR TRP VAL PRO ASN PHE GLY ILE GLN GLU HIS MET ALA SEQRES 29 A 424 HIS SER GLU GLN MET ASN ALA VAL PHE PRO HIS ALA TYR SEQRES 30 A 424 THR PHE ASN ASP GLY TYR PHE THR PRO GLY GLU LYS PRO SEQRES 31 A 424 GLY HIS GLY VAL ASP ILE ASP GLU LYS LEU ALA ALA GLN SEQRES 32 A 424 TYR PRO TYR LYS ARG ALA CYS LEU PRO VAL ASN ARG LEU SEQRES 33 A 424 GLU ASP GLY THR LEU TRP HIS TRP HET MG A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET NHE A 406 13 HET NHE A 407 13 HET CL A 408 1 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 MG MG 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 NHE 2(C8 H17 N O3 S) FORMUL 7 CL CL 1- FORMUL 8 HOH *427(H2 O) HELIX 1 1 ARG A 39 TYR A 50 1 12 HELIX 2 2 TYR A 50 ILE A 56 1 7 HELIX 3 3 GLN A 62 ALA A 74 1 13 HELIX 4 4 GLY A 79 ALA A 101 1 23 HELIX 5 5 PRO A 104 GLY A 110 1 7 HELIX 6 6 ASP A 127 LYS A 141 1 15 HELIX 7 7 SER A 182 GLY A 202 1 21 HELIX 8 8 THR A 216 GLU A 228 1 13 HELIX 9 9 PRO A 229 HIS A 231 5 3 HELIX 10 10 GLU A 245 THR A 254 1 10 HELIX 11 11 SER A 266 ASP A 269 5 4 HELIX 12 12 CYS A 270 ASN A 276 1 7 HELIX 13 13 GLY A 290 LEU A 304 1 15 HELIX 14 14 SER A 318 VAL A 332 1 15 HELIX 15 15 SER A 344 PHE A 351 1 8 HELIX 16 16 ASP A 375 ALA A 380 1 6 SHEET 1 A 3 ILE A 3 THR A 11 0 SHEET 2 A 3 PHE A 17 THR A 24 -1 O THR A 19 N ILE A 9 SHEET 3 A 3 TYR A 29 ASP A 33 -1 O GLY A 32 N LEU A 20 SHEET 1 B11 THR A 356 ASN A 358 0 SHEET 2 B11 TYR A 361 THR A 363 -1 O TYR A 361 N ASN A 358 SHEET 3 B11 ILE A 117 GLY A 125 -1 N ILE A 117 O PHE A 362 SHEET 4 B11 PHE A 335 GLU A 339 1 O GLN A 338 N LEU A 118 SHEET 5 B11 ARG A 308 PHE A 311 1 N PHE A 311 O GLU A 339 SHEET 6 B11 TYR A 281 ILE A 282 1 N ILE A 282 O GLY A 310 SHEET 7 B11 LEU A 258 VAL A 260 1 N VAL A 260 O TYR A 281 SHEET 8 B11 TRP A 234 GLU A 236 1 N MET A 235 O ALA A 259 SHEET 9 B11 HIS A 206 ASP A 210 1 N HIS A 209 O GLU A 236 SHEET 10 B11 ALA A 145 CYS A 150 1 N VAL A 148 O LEU A 208 SHEET 11 B11 ILE A 117 GLY A 125 1 N THR A 121 O ARG A 147 SHEET 1 C 2 VAL A 178 TRP A 181 0 SHEET 2 C 2 VAL A 391 LEU A 394 1 O VAL A 391 N GLU A 179 LINK OD2 ASP A 210 MG MG A 403 1555 1555 2.11 LINK OE2 GLU A 236 MG MG A 403 1555 1555 2.06 LINK OE1 GLU A 262 MG MG A 403 1555 1555 2.13 LINK MG MG A 403 O HOH A 414 1555 1555 1.91 LINK MG MG A 403 O HOH A 496 1555 1555 2.08 LINK MG MG A 403 O HOH A 527 1555 1555 2.23 SITE 1 AC1 6 ASP A 210 GLU A 236 GLU A 262 HOH A 414 SITE 2 AC1 6 HOH A 496 HOH A 527 SITE 1 AC2 10 TYR A 46 PHE A 70 TYR A 71 ALA A 74 SITE 2 AC2 10 TRP A 76 ARG A 77 ARG A 78 GLY A 82 SITE 3 AC2 10 MET A 83 HOH A 475 SITE 1 AC3 10 ASN A 37 TYR A 75 TRP A 76 TYR A 159 SITE 2 AC3 10 GLU A 262 HIS A 312 ALA A 314 ASP A 316 SITE 3 AC3 10 HOH A 459 HOH A 808 SITE 1 AC4 6 GLN A 62 PHE A 69 ARG A 114 ARG A 393 SITE 2 AC4 6 GLY A 397 HOH A 453 SITE 1 AC5 7 LYS A 141 ASN A 348 HIS A 353 TYR A 355 SITE 2 AC5 7 PHE A 362 HOH A 625 HOH A 636 SITE 1 AC6 4 GLY A 79 PRO A 80 VAL A 81 HOH A 498 CRYST1 124.302 124.302 111.300 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008985 0.00000