HEADER IMMUNE SYSTEM 14-DEC-11 3V44 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL FRAGMENT OF ZEBRAFISH TLR5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE RECEPTOR B.61 COMPND 3 CHIMERIC PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: ZEBRAFISH TOLL-LIKE RECEPTOR 5B (UNP RESIDUES 22-342) AND COMPND 6 HAGFISH VARIABLE LYMPHOCYTE RECEPTOR B.61 (UNP RESIDUES 126-200); COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: ZEBRA FISH, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 7955, 7764; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HI5 KEYWDS FLAGELLIN, INNATE IMMUNITY, LEUCINE-RICH REPEAT, INNATE IMMUNE KEYWDS 2 RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.I.YOON,H.HONG,I.A.WILSON REVDAT 6 16-OCT-24 3V44 1 HETSYN REVDAT 5 29-JUL-20 3V44 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 08-NOV-17 3V44 1 REMARK REVDAT 3 02-AUG-17 3V44 1 SOURCE REMARK REVDAT 2 07-MAR-12 3V44 1 TITLE REVDAT 1 29-FEB-12 3V44 0 JRNL AUTH S.I.YOON,O.KURNASOV,V.NATARAJAN,M.HONG,A.V.GUDKOV, JRNL AUTH 2 A.L.OSTERMAN,I.A.WILSON JRNL TITL STRUCTURAL BASIS OF TLR5-FLAGELLIN RECOGNITION AND JRNL TITL 2 SIGNALING. JRNL REF SCIENCE V. 335 859 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22344444 JRNL DOI 10.1126/SCIENCE.1215584 REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 21758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.355 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3268 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2182 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4433 ; 1.386 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5340 ; 4.212 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;38.834 ;25.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;15.668 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3605 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 642 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 0.451 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 812 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3225 ; 0.904 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 1.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 3.095 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6750 -12.6630 5.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1110 REMARK 3 T33: 0.0547 T12: 0.0244 REMARK 3 T13: 0.0146 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 3.2041 L22: 1.7120 REMARK 3 L33: 3.4968 L12: -0.1001 REMARK 3 L13: 1.6036 L23: -0.2796 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.1944 S13: 0.1149 REMARK 3 S21: 0.0751 S22: 0.1373 S23: 0.1954 REMARK 3 S31: -0.3579 S32: -0.3992 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 343 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9490 -25.1680 25.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.4380 REMARK 3 T33: 0.2256 T12: -0.0641 REMARK 3 T13: -0.0642 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 4.3233 L22: 0.9225 REMARK 3 L33: 3.5768 L12: -1.1452 REMARK 3 L13: 3.9174 L23: -0.9557 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.0843 S13: -0.1161 REMARK 3 S21: 0.0334 S22: 0.0052 S23: -0.0150 REMARK 3 S31: 0.0198 S32: 0.1377 S33: -0.0536 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPD, 0.1 M HEPES PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.55150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.16500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.32725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.16500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.77575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.16500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.32725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.16500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.77575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.55150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CD CE NZ REMARK 470 LYS A 227 CE NZ REMARK 470 HIS A 275 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 408 CE NZ REMARK 470 ARG A 411 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 49.20 -109.96 REMARK 500 GLN A 80 66.91 33.54 REMARK 500 LEU A 95 58.64 -97.15 REMARK 500 ASN A 156 -159.69 -102.86 REMARK 500 LEU A 204 41.86 -106.16 REMARK 500 THR A 208 -45.67 85.42 REMARK 500 SER A 302 -159.45 -114.10 REMARK 500 ASN A 326 -149.85 -100.12 REMARK 500 LEU A 339 49.07 -109.68 REMARK 500 ASN A 350 -147.97 -116.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V47 RELATED DB: PDB DBREF 3V44 A 22 342 UNP B3DIN1 B3DIN1_DANRE 22 342 DBREF 3V44 A 343 417 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 SEQADV 3V44 ALA A 18 UNP B3DIN1 EXPRESSION TAG SEQADV 3V44 ASP A 19 UNP B3DIN1 EXPRESSION TAG SEQADV 3V44 PRO A 20 UNP B3DIN1 EXPRESSION TAG SEQADV 3V44 GLY A 21 UNP B3DIN1 EXPRESSION TAG SEQADV 3V44 GLU A 24 UNP B3DIN1 VAL 24 ENGINEERED MUTATION SEQADV 3V44 VAL A 124 UNP B3DIN1 LEU 124 ENGINEERED MUTATION SEQADV 3V44 LYS A 159 UNP B3DIN1 GLN 159 ENGINEERED MUTATION SEQADV 3V44 LYS A 227 UNP B3DIN1 ARG 227 ENGINEERED MUTATION SEQADV 3V44 THR A 229 UNP B3DIN1 SER 229 ENGINEERED MUTATION SEQADV 3V44 ASN A 334 UNP B3DIN1 ASP 334 ENGINEERED MUTATION SEQADV 3V44 SER A 418 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 ALA A 419 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 SER A 420 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 LEU A 421 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 VAL A 422 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 PRO A 423 UNP Q4G1L2 EXPRESSION TAG SEQADV 3V44 ARG A 424 UNP Q4G1L2 EXPRESSION TAG SEQRES 1 A 407 ALA ASP PRO GLY THR SER GLU CYS SER VAL ILE GLY TYR SEQRES 2 A 407 ASN ALA ILE CYS ILE ASN ARG GLY LEU HIS GLN VAL PRO SEQRES 3 A 407 GLU LEU PRO ALA HIS VAL ASN TYR VAL ASP LEU SER LEU SEQRES 4 A 407 ASN SER ILE ALA GLU LEU ASN GLU THR SER PHE SER ARG SEQRES 5 A 407 LEU GLN ASP LEU GLN PHE LEU LYS VAL GLU GLN GLN THR SEQRES 6 A 407 PRO GLY LEU VAL ILE ARG ASN ASN THR PHE ARG GLY LEU SEQRES 7 A 407 SER SER LEU ILE ILE LEU LYS LEU ASP TYR ASN GLN PHE SEQRES 8 A 407 LEU GLN LEU GLU THR GLY ALA PHE ASN GLY LEU ALA ASN SEQRES 9 A 407 LEU GLU VAL LEU THR LEU THR GLN CYS ASN LEU ASP GLY SEQRES 10 A 407 ALA VAL LEU SER GLY ASN PHE PHE LYS PRO LEU THR SER SEQRES 11 A 407 LEU GLU MET LEU VAL LEU ARG ASP ASN ASN ILE LYS LYS SEQRES 12 A 407 ILE GLN PRO ALA SER PHE PHE LEU ASN MET ARG ARG PHE SEQRES 13 A 407 HIS VAL LEU ASP LEU THR PHE ASN LYS VAL LYS SER ILE SEQRES 14 A 407 CYS GLU GLU ASP LEU LEU ASN PHE GLN GLY LYS HIS PHE SEQRES 15 A 407 THR LEU LEU ARG LEU SER SER ILE THR LEU GLN ASP MET SEQRES 16 A 407 ASN GLU TYR TRP LEU GLY TRP GLU LYS CYS GLY ASN PRO SEQRES 17 A 407 PHE LYS ASN THR SER ILE THR THR LEU ASP LEU SER GLY SEQRES 18 A 407 ASN GLY PHE LYS GLU SER MET ALA LYS ARG PHE PHE ASP SEQRES 19 A 407 ALA ILE ALA GLY THR LYS ILE GLN SER LEU ILE LEU SER SEQRES 20 A 407 ASN SER TYR ASN MET GLY SER SER PHE GLY HIS THR ASN SEQRES 21 A 407 PHE LYS ASP PRO ASP ASN PHE THR PHE LYS GLY LEU GLU SEQRES 22 A 407 ALA SER GLY VAL LYS THR CYS ASP LEU SER LYS SER LYS SEQRES 23 A 407 ILE PHE ALA LEU LEU LYS SER VAL PHE SER HIS PHE THR SEQRES 24 A 407 ASP LEU GLU GLN LEU THR LEU ALA GLN ASN GLU ILE ASN SEQRES 25 A 407 LYS ILE ASP ASP ASN ALA PHE TRP GLY LEU THR HIS LEU SEQRES 26 A 407 LYS GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL SEQRES 27 A 407 PRO ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS SEQRES 28 A 407 ILE TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO SEQRES 29 A 407 ARG ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER SEQRES 30 A 407 GLN LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY SEQRES 31 A 407 LYS PRO VAL ARG SER ILE ILE CYS PRO THR SER ALA SER SEQRES 32 A 407 LEU VAL PRO ARG MODRES 3V44 ASN A 89 ASN GLYCOSYLATION SITE MODRES 3V44 ASN A 228 ASN GLYCOSYLATION SITE MODRES 3V44 ASN A 63 ASN GLYCOSYLATION SITE HET NAG A 801 14 HET NAG A 802 14 HET NAG A 803 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 HOH *14(H2 O) HELIX 1 1 GLY A 134 GLY A 139 1 6 HELIX 2 2 ALA A 164 MET A 170 5 7 HELIX 3 3 LEU A 191 GLN A 195 5 5 HELIX 4 4 GLY A 218 GLY A 223 1 6 HELIX 5 5 LYS A 242 ILE A 253 1 12 HELIX 6 6 PHE A 286 SER A 292 5 7 HELIX 7 7 ILE A 383 ASN A 393 1 11 HELIX 8 8 PRO A 409 ILE A 413 5 5 HELIX 9 9 SER A 418 VAL A 422 5 5 SHEET 1 A15 SER A 26 ILE A 28 0 SHEET 2 A15 ASN A 31 ILE A 33 -1 O ILE A 33 N SER A 26 SHEET 3 A15 TYR A 51 ASP A 53 1 O TYR A 51 N ALA A 32 SHEET 4 A15 PHE A 75 LYS A 77 1 O LYS A 77 N VAL A 52 SHEET 5 A15 ILE A 100 LYS A 102 1 O ILE A 100 N LEU A 76 SHEET 6 A15 VAL A 124 THR A 126 1 O VAL A 124 N LEU A 101 SHEET 7 A15 MET A 150 VAL A 152 1 O MET A 150 N LEU A 125 SHEET 8 A15 VAL A 175 ASP A 177 1 O VAL A 175 N LEU A 151 SHEET 9 A15 HIS A 198 ARG A 203 1 O ARG A 203 N LEU A 176 SHEET 10 A15 SER A 230 ASP A 235 1 O THR A 232 N PHE A 199 SHEET 11 A15 ILE A 258 ILE A 262 1 O SER A 260 N THR A 232 SHEET 12 A15 THR A 296 ASP A 298 1 O THR A 296 N LEU A 261 SHEET 13 A15 GLN A 320 THR A 322 1 O THR A 322 N CYS A 297 SHEET 14 A15 GLU A 344 ALA A 346 1 O GLU A 344 N LEU A 321 SHEET 15 A15 LYS A 368 TRP A 370 1 O LYS A 368 N LEU A 345 SHEET 1 B 3 GLU A 61 LEU A 62 0 SHEET 2 B 3 VAL A 86 ILE A 87 1 O VAL A 86 N LEU A 62 SHEET 3 B 3 GLN A 110 LEU A 111 1 O GLN A 110 N ILE A 87 SHEET 1 C 2 ALA A 306 LEU A 307 0 SHEET 2 C 2 LYS A 330 ILE A 331 1 O LYS A 330 N LEU A 307 SSBOND 1 CYS A 25 CYS A 34 1555 1555 2.07 SSBOND 2 CYS A 187 CYS A 222 1555 1555 2.11 SSBOND 3 CYS A 378 CYS A 403 1555 1555 2.04 SSBOND 4 CYS A 380 CYS A 415 1555 1555 2.08 LINK ND2 ASN A 63 C1 NAG A 801 1555 1555 1.46 LINK ND2 ASN A 89 C1 NAG A 802 1555 1555 1.44 LINK ND2 ASN A 228 C1 NAG A 803 1555 1555 1.45 CISPEP 1 CYS A 380 PRO A 381 0 -1.74 CRYST1 98.330 98.330 195.103 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005125 0.00000