HEADER SIGNALING PROTEIN 14-DEC-11 3V4F TITLE H-RAS PEG 400/CACL2, ORDERED OFF COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, GTPASE COMPND 5 HRAS, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GTP-BINDING, NUCLEOTIDE BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HOLZAPFEL,C.MATTOS REVDAT 5 28-FEB-24 3V4F 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3V4F 1 REMARK REVDAT 3 17-OCT-12 3V4F 1 JRNL REVDAT 2 15-AUG-12 3V4F 1 TITLE REVDAT 1 08-AUG-12 3V4F 0 JRNL AUTH G.HOLZAPFEL,G.BUHRMAN,C.MATTOS JRNL TITL SHIFT IN THE EQUILIBRIUM BETWEEN ON AND OFF STATES OF THE JRNL TITL 2 ALLOSTERIC SWITCH IN RAS-GPPNHP AFFECTED BY SMALL MOLECULES JRNL TITL 3 AND BULK SOLVENT COMPOSITION. JRNL REF BIOCHEMISTRY V. 51 6114 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22845804 JRNL DOI 10.1021/BI300509J REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2839 - 3.3506 1.00 2902 150 0.1743 0.1895 REMARK 3 2 3.3506 - 2.6598 1.00 2807 145 0.1769 0.1904 REMARK 3 3 2.6598 - 2.3237 1.00 2781 144 0.1812 0.1847 REMARK 3 4 2.3237 - 2.1113 1.00 2769 144 0.1746 0.1839 REMARK 3 5 2.1113 - 1.9600 1.00 2774 143 0.1732 0.2070 REMARK 3 6 1.9600 - 1.8444 1.00 2752 142 0.1590 0.1922 REMARK 3 7 1.8444 - 1.7521 1.00 2777 143 0.1649 0.1867 REMARK 3 8 1.7521 - 1.6758 1.00 2742 142 0.1735 0.2008 REMARK 3 9 1.6758 - 1.6113 1.00 2741 142 0.1799 0.1849 REMARK 3 10 1.6113 - 1.5557 1.00 2749 142 0.1863 0.1870 REMARK 3 11 1.5557 - 1.5070 1.00 2741 141 0.2084 0.2141 REMARK 3 12 1.5070 - 1.4640 1.00 2755 142 0.2576 0.2935 REMARK 3 13 1.4640 - 1.4254 1.00 2726 142 0.3121 0.3256 REMARK 3 14 1.4254 - 1.3906 0.96 2634 137 0.3826 0.3437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 55.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09460 REMARK 3 B22 (A**2) : -1.09460 REMARK 3 B33 (A**2) : 2.18920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1397 REMARK 3 ANGLE : 1.169 1901 REMARK 3 CHIRALITY : 0.068 214 REMARK 3 PLANARITY : 0.005 244 REMARK 3 DIHEDRAL : 14.370 530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 200 MM CACL2, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.26050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.55381 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.68667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.26050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.55381 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.68667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.26050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.55381 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.68667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.26050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.55381 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.68667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.26050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.55381 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.68667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.26050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.55381 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.68667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.10762 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.37333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.10762 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.37333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.10762 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.37333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.10762 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.37333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.10762 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.37333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.10762 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.37333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 153.32287 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -132.78150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 76.66143 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -132.78150 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 76.66143 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -134.06000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 153.32287 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -134.06000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -134.06000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 194 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 196 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 396 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1497 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 360 O HOH A 1481 2.11 REMARK 500 O GLY A 138 O HOH A 545 2.16 REMARK 500 O HOH A 1502 O HOH A 1503 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -85.06 -89.61 REMARK 500 LYS A 117 34.47 71.28 REMARK 500 ARG A 149 -2.87 79.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 192 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.0 REMARK 620 3 GNP A 190 O2G 172.7 90.8 REMARK 620 4 GNP A 190 O2B 91.9 173.9 95.3 REMARK 620 5 HOH A 301 O 88.5 89.0 92.7 90.4 REMARK 620 6 HOH A 544 O 86.4 90.0 92.3 90.0 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 191 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 84.2 REMARK 620 3 HOH A 309 O 88.8 84.4 REMARK 620 4 HOH A1474 O 162.8 78.6 90.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 196 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 102 O REMARK 620 2 ASP A 105 OD1 95.4 REMARK 620 3 ASP A 105 OD2 84.7 43.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 342 O REMARK 620 2 HOH A 364 O 75.6 REMARK 620 3 HOH A 440 O 126.4 69.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 190 DBREF 3V4F A 1 166 UNP P20171 RASH_RAT 1 166 SEQADV 3V4F GLU A 70 UNP P20171 GLN 70 CONFLICT SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLU TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET CA A 191 1 HET MG A 192 1 HET MG A 194 1 HET DTU A 201 8 HET CA A 196 1 HET GNP A 190 32 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 CA 2(CA 2+) FORMUL 3 MG 2(MG 2+) FORMUL 5 DTU C4 H10 O2 S2 FORMUL 7 GNP C10 H17 N6 O13 P3 FORMUL 8 HOH *173(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 SER A 65 5 5 HELIX 3 3 MET A 67 ARG A 73 1 7 HELIX 4 4 ASN A 86 ASP A 92 1 7 HELIX 5 5 ASP A 92 ASP A 105 1 14 HELIX 6 6 GLU A 126 GLY A 138 1 13 HELIX 7 7 GLY A 151 ARG A 164 1 14 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 A 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 192 1555 1555 2.12 LINK O PHE A 28 CA CA A 191 1555 1555 2.34 LINK OD1 ASP A 30 CA CA A 191 1555 1555 2.45 LINK OG1 THR A 35 MG MG A 192 1555 1555 2.14 LINK O ARG A 102 CA CA A 196 1555 1555 2.27 LINK OD1 ASP A 105 CA CA A 196 1555 1555 2.68 LINK OD2 ASP A 105 CA CA A 196 1555 1555 3.12 LINK O2G GNP A 190 MG MG A 192 1555 1555 2.02 LINK O2B GNP A 190 MG MG A 192 1555 1555 2.09 LINK CA CA A 191 O HOH A 309 1555 1555 2.44 LINK CA CA A 191 O HOH A1474 1555 1555 2.52 LINK MG MG A 192 O HOH A 301 1555 1555 2.14 LINK MG MG A 192 O HOH A 544 1555 1555 2.13 LINK MG MG A 194 O HOH A 342 1555 1555 2.59 LINK MG MG A 194 O HOH A 364 1555 1555 2.41 LINK MG MG A 194 O HOH A 440 1555 1555 2.88 SITE 1 AC1 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC1 6 HOH A 309 HOH A1474 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 190 HOH A 301 SITE 2 AC2 5 HOH A 544 SITE 1 AC3 3 HOH A 342 HOH A 364 HOH A 440 SITE 1 AC4 5 ARG A 68 ASP A 92 GLN A 95 TYR A 96 SITE 2 AC4 5 GLN A 99 SITE 1 AC5 2 ARG A 102 ASP A 105 SITE 1 AC6 32 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC6 32 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC6 32 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC6 32 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC6 32 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC6 32 SER A 145 ALA A 146 LYS A 147 HOH A 175 SITE 7 AC6 32 MG A 192 HOH A 301 HOH A 304 HOH A 327 SITE 8 AC6 32 HOH A 334 HOH A 390 HOH A 428 HOH A 544 CRYST1 88.521 88.521 134.060 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011297 0.006522 0.000000 0.00000 SCALE2 0.000000 0.013044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007459 0.00000