HEADER IMMUNE SYSTEM 15-DEC-11 3V4U TITLE STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 L CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, L-D ALPHA CHAIN; COMPND 9 CHAIN: P; COMPND 10 FRAGMENT: H-2L(D) PEPTIDE SEGMENT 46-54; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IG-FOLD, 3-10 HELIX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.H.MARGULIES,M.G.MAGE,R.WANG,K.NATARAJAN REVDAT 2 01-AUG-12 3V4U 1 JRNL REVDAT 1 25-JUL-12 3V4U 0 JRNL AUTH M.G.MAGE,M.A.DOLAN,R.WANG,L.F.BOYD,M.J.REVILLEZA,H.ROBINSON, JRNL AUTH 2 K.NATARAJAN,N.B.MYERS,T.H.HANSEN,D.H.MARGULIES JRNL TITL THE PEPTIDE-RECEPTIVE TRANSITION STATE OF MHC CLASS I JRNL TITL 2 MOLECULES: INSIGHT FROM STRUCTURE AND MOLECULAR DYNAMICS. JRNL REF J.IMMUNOL. V. 189 1391 2012 JRNL REFN ISSN 0022-1767 JRNL PMID 22753930 JRNL DOI 10.4049/JIMMUNOL.1200831 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 53846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6875 - 4.4458 1.00 2812 137 0.1621 0.1639 REMARK 3 2 4.4458 - 3.5293 1.00 2733 135 0.1668 0.2144 REMARK 3 3 3.5293 - 3.0834 1.00 2683 147 0.2006 0.2462 REMARK 3 4 3.0834 - 2.8015 1.00 2690 133 0.2203 0.2399 REMARK 3 5 2.8015 - 2.6008 0.99 2660 155 0.2182 0.2686 REMARK 3 6 2.6008 - 2.4474 0.99 2622 156 0.2330 0.3129 REMARK 3 7 2.4474 - 2.3249 0.99 2623 160 0.2429 0.2642 REMARK 3 8 2.3249 - 2.2237 0.99 2631 148 0.2363 0.2838 REMARK 3 9 2.2237 - 2.1381 0.99 2606 141 0.2422 0.3085 REMARK 3 10 2.1381 - 2.0643 0.98 2671 122 0.2502 0.2673 REMARK 3 11 2.0643 - 1.9998 0.98 2619 120 0.2693 0.3223 REMARK 3 12 1.9998 - 1.9426 0.97 2560 142 0.2487 0.2978 REMARK 3 13 1.9426 - 1.8915 0.96 2548 143 0.2808 0.2834 REMARK 3 14 1.8915 - 1.8453 0.95 2508 144 0.2922 0.3621 REMARK 3 15 1.8453 - 1.8034 0.94 2531 116 0.3112 0.3151 REMARK 3 16 1.8034 - 1.7650 0.93 2421 135 0.3221 0.3258 REMARK 3 17 1.7650 - 1.7297 0.93 2498 133 0.3383 0.3854 REMARK 3 18 1.7297 - 1.6970 0.90 2349 113 0.3223 0.3764 REMARK 3 19 1.6970 - 1.6667 0.88 2356 147 0.3599 0.4207 REMARK 3 20 1.6667 - 1.6400 0.75 1991 107 0.3690 0.3954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 37.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16950 REMARK 3 B22 (A**2) : 3.43750 REMARK 3 B33 (A**2) : -4.60710 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 3.79430 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3577 REMARK 3 ANGLE : 1.208 4713 REMARK 3 CHIRALITY : 0.090 536 REMARK 3 PLANARITY : 0.006 600 REMARK 3 DIHEDRAL : 13.780 1233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'H' and (resseq 1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2791 -0.8298 18.1985 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.1813 REMARK 3 T33: 0.4667 T12: 0.0576 REMARK 3 T13: -0.0477 T23: -0.1294 REMARK 3 L TENSOR REMARK 3 L11: 0.2424 L22: 0.5269 REMARK 3 L33: 0.4370 L12: -0.3451 REMARK 3 L13: -0.1320 L23: 0.1029 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.0574 S13: -0.3087 REMARK 3 S21: 0.0114 S22: 0.0854 S23: -0.0258 REMARK 3 S31: -0.0976 S32: -0.1485 S33: -0.0360 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'H' and (resseq 18:40) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7118 -8.4290 24.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.1893 REMARK 3 T33: 0.4891 T12: -0.0425 REMARK 3 T13: -0.0208 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 0.1740 L22: 1.4200 REMARK 3 L33: 0.2164 L12: -0.4823 REMARK 3 L13: -0.1636 L23: 0.5363 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.0163 S13: -0.6780 REMARK 3 S21: -0.2351 S22: -0.1314 S23: 0.4092 REMARK 3 S31: 0.0873 S32: -0.0687 S33: -0.0306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'H' and (resseq 41:83) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1005 -2.0927 28.8497 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.2808 REMARK 3 T33: 0.2889 T12: 0.0290 REMARK 3 T13: 0.0531 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 1.0538 L22: 0.5572 REMARK 3 L33: 1.6410 L12: -0.6026 REMARK 3 L13: 0.5182 L23: 0.2476 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.4235 S13: -0.1846 REMARK 3 S21: 0.0384 S22: 0.0132 S23: 0.0133 REMARK 3 S31: -0.3703 S32: -0.3514 S33: 0.0156 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'H' and (resseq 84:149) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9505 2.6526 6.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1987 REMARK 3 T33: 0.2674 T12: 0.0152 REMARK 3 T13: 0.0201 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.4820 L22: 0.4404 REMARK 3 L33: 0.1093 L12: -0.2911 REMARK 3 L13: -0.1212 L23: -0.1007 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: 0.2724 S13: 0.2173 REMARK 3 S21: 0.1009 S22: -0.1432 S23: -0.2976 REMARK 3 S31: -0.2349 S32: 0.0687 S33: -0.0570 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'H' and (resseq 150:216) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4537 0.5155 -6.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.4537 REMARK 3 T33: 0.2476 T12: 0.0495 REMARK 3 T13: 0.0237 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 0.3568 L22: 0.3224 REMARK 3 L33: 0.7911 L12: 0.0907 REMARK 3 L13: -0.2025 L23: 0.4260 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.4198 S13: 0.1688 REMARK 3 S21: 0.0546 S22: -0.0563 S23: 0.0874 REMARK 3 S31: 0.1016 S32: -0.1239 S33: -0.0043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'L' and (resseq 1:37) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5064 -4.7703 18.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.2199 T22: 0.1935 REMARK 3 T33: 0.2047 T12: 0.0546 REMARK 3 T13: -0.0165 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.1548 L22: 0.6844 REMARK 3 L33: 0.4158 L12: -0.0865 REMARK 3 L13: 0.0483 L23: -0.4089 REMARK 3 S TENSOR REMARK 3 S11: 0.1138 S12: 0.3320 S13: 0.0261 REMARK 3 S21: 0.1473 S22: -0.1420 S23: -0.0112 REMARK 3 S31: -0.1539 S32: 0.1310 S33: -0.0202 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'L' and (resseq 38:132) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4018 -6.0956 8.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.3070 REMARK 3 T33: 0.1773 T12: 0.1020 REMARK 3 T13: -0.0081 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 0.8449 L22: 0.3744 REMARK 3 L33: 0.2363 L12: -0.1341 REMARK 3 L13: 0.3585 L23: -0.4682 REMARK 3 S TENSOR REMARK 3 S11: 0.2138 S12: 0.5332 S13: -0.0603 REMARK 3 S21: 0.1456 S22: -0.1069 S23: -0.0731 REMARK 3 S31: 0.1425 S32: 0.2671 S33: 0.0195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'L' and (resseq 133:218) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4130 12.2279 -12.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.7373 REMARK 3 T33: 0.0615 T12: -0.1019 REMARK 3 T13: 0.0314 T23: 0.1370 REMARK 3 L TENSOR REMARK 3 L11: 0.0767 L22: 0.3757 REMARK 3 L33: 0.7126 L12: 0.1363 REMARK 3 L13: 0.0572 L23: 0.3580 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.2945 S13: 0.0740 REMARK 3 S21: -0.0696 S22: 0.2659 S23: -0.2275 REMARK 3 S31: -0.1136 S32: 0.8639 S33: 0.4377 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'P' REMARK 3 ORIGIN FOR THE GROUP (A): 29.3022 -9.9517 34.9157 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.3496 REMARK 3 T33: 0.3416 T12: 0.0849 REMARK 3 T13: 0.0631 T23: 0.1497 REMARK 3 L TENSOR REMARK 3 L11: 0.5057 L22: 0.3397 REMARK 3 L33: 0.5338 L12: 0.2351 REMARK 3 L13: 0.3654 L23: 0.2402 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.1065 S13: -0.1371 REMARK 3 S21: 0.0623 S22: 0.0322 S23: 0.0060 REMARK 3 S31: 0.1848 S32: -0.0787 S33: -0.1372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB069596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 41.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LISO4, 0.1M TRIS, 30%(W/V)PEG REMARK 280 3000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.32150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.07000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.32150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN P 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU H 8 O HOH H 365 1.97 REMARK 500 O HOH H 395 O HOH H 422 1.98 REMARK 500 O HOH L 394 O HOH L 485 2.02 REMARK 500 O HOH H 384 O HOH H 387 2.05 REMARK 500 O HOH H 392 O HOH L 441 2.06 REMARK 500 O HOH H 423 O HOH H 432 2.10 REMARK 500 O HOH H 347 O HOH L 410 2.17 REMARK 500 O HOH L 429 O HOH L 434 2.17 REMARK 500 O PRO H 130 O HOH H 410 2.19 REMARK 500 O LEU H 64 O HOH H 379 2.19 REMARK 500 O ASP L 114 O HOH L 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 28 96.75 -60.30 REMARK 500 ASN H 52 -168.72 -78.47 REMARK 500 SER H 85 47.08 39.16 REMARK 500 SER H 164 -30.44 -141.73 REMARK 500 VAL L 56 -44.86 64.90 REMARK 500 VAL L 99 123.02 -39.72 REMARK 500 LYS L 203 -15.67 71.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL L 56 19.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 448 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH L 483 DISTANCE = 5.04 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UO1 RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN REMARK 900 RELATED ID: 3UYR RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN REMARK 900 RELATED ID: 3V52 RELATED DB: PDB REMARK 900 STRUCTURE OF A MONOCLONAL ANTIBODY COMPLEXED WITH ITS MHC-I REMARK 900 ANTIGEN DBREF 3V4U P 46 54 UNP P01897 HA1L_MOUSE 70 78 DBREF 3V4U H 1 216 PDB 3V4U 3V4U 1 216 DBREF 3V4U L 1 218 PDB 3V4U 3V4U 1 218 SEQRES 1 H 216 GLU VAL LYS LEU VAL GLU SER GLU GLY GLY LEU VAL GLN SEQRES 2 H 216 PRO GLY SER SER MET LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 216 PHE THR PHE SER ASP TYR TYR MET ALA TRP VAL ARG GLN SEQRES 4 H 216 VAL PRO GLU LYS GLY LEU GLU TRP VAL ALA ASN ILE ASN SEQRES 5 H 216 TYR ASP GLY SER SER THR TYR TYR LEU ASP SER LEU LYS SEQRES 6 H 216 GLY ARG PHE ILE ILE SER ARG ASP ILE ALA LYS ASN ILE SEQRES 7 H 216 LEU TYR LEU GLN MET SER SER LEU ARG CYS GLU ASP THR SEQRES 8 H 216 ALA THR TYR TYR CYS ALA ARG LEU THR ASN GLY TYR LEU SEQRES 9 H 216 ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SER SER SEQRES 10 H 216 ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 216 GLY CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 216 CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL THR VAL SEQRES 13 H 216 THR TRP ASN SER GLY SER LEU SER SER SER VAL HIS THR SEQRES 14 H 216 PHE PRO ALA LEU LEU GLU SER GLY LEU TYR THR MET SER SEQRES 15 H 216 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLN SEQRES 16 H 216 THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 216 THR VAL ASP LYS LYS LEU GLU PRO SEQRES 1 L 218 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ASN LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 PHE CYS SER GLN SER THR HIS VAL PRO THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 P 9 GLU PRO GLN ALA PRO TRP MET GLU GLN FORMUL 4 HOH *355(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ARG H 87 THR H 91 5 5 HELIX 3 3 SER H 160 SER H 162 5 3 HELIX 4 4 SER H 190 TRP H 192 5 3 HELIX 5 5 PRO H 204 SER H 207 5 4 HELIX 6 6 GLU L 84 LEU L 88 5 5 HELIX 7 7 SER L 125 SER L 131 1 7 HELIX 8 8 LYS L 187 GLU L 191 1 5 HELIX 9 9 ASN L 216 CYS L 218 5 3 SHEET 1 A 4 LYS H 3 GLU H 6 0 SHEET 2 A 4 MET H 18 SER H 25 -1 O THR H 23 N VAL H 5 SHEET 3 A 4 ILE H 78 MET H 83 -1 O MET H 83 N MET H 18 SHEET 4 A 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 B 6 GLY H 10 VAL H 12 0 SHEET 2 B 6 THR H 111 VAL H 115 1 O THR H 112 N GLY H 10 SHEET 3 B 6 ALA H 92 THR H 100 -1 N TYR H 94 O THR H 111 SHEET 4 B 6 TYR H 33 VAL H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 58 TYR H 60 -1 O TYR H 59 N ASN H 50 SHEET 1 C 4 GLY H 10 VAL H 12 0 SHEET 2 C 4 THR H 111 VAL H 115 1 O THR H 112 N GLY H 10 SHEET 3 C 4 ALA H 92 THR H 100 -1 N TYR H 94 O THR H 111 SHEET 4 C 4 TYR H 103 TRP H 107 -1 O TYR H 103 N THR H 100 SHEET 1 D 4 SER H 124 LEU H 128 0 SHEET 2 D 4 SER H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 D 4 LEU H 178 PRO H 188 -1 O MET H 181 N VAL H 146 SHEET 4 D 4 VAL H 167 GLU H 175 -1 N GLU H 175 O LEU H 178 SHEET 1 E 3 THR H 155 TRP H 158 0 SHEET 2 E 3 THR H 198 HIS H 203 -1 O SER H 200 N THR H 157 SHEET 3 E 3 THR H 208 LYS H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 F 4 MET L 4 THR L 7 0 SHEET 2 F 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 F 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 F 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 G 6 SER L 10 SER L 14 0 SHEET 2 G 6 THR L 106 LYS L 111 1 O LYS L 107 N LEU L 11 SHEET 3 G 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 106 SHEET 4 G 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 G 6 PRO L 49 TYR L 54 -1 O ASN L 50 N LEU L 42 SHEET 6 G 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 H 4 SER L 10 SER L 14 0 SHEET 2 H 4 THR L 106 LYS L 111 1 O LYS L 107 N LEU L 11 SHEET 3 H 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 106 SHEET 4 H 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 95 SHEET 1 I 4 THR L 118 PHE L 122 0 SHEET 2 I 4 GLY L 133 PHE L 143 -1 O ASN L 141 N THR L 118 SHEET 3 I 4 TYR L 177 THR L 186 -1 O MET L 179 N LEU L 140 SHEET 4 I 4 VAL L 163 TRP L 167 -1 N SER L 166 O SER L 180 SHEET 1 J 4 SER L 157 GLU L 158 0 SHEET 2 J 4 ASN L 149 ILE L 154 -1 N ILE L 154 O SER L 157 SHEET 3 J 4 SER L 195 THR L 201 -1 O THR L 201 N ASN L 149 SHEET 4 J 4 ILE L 209 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 132 CYS L 218 1555 1555 2.04 SSBOND 3 CYS H 144 CYS H 199 1555 1555 2.02 SSBOND 4 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 5 CYS L 138 CYS L 198 1555 1555 2.03 CISPEP 1 GLU H 1 VAL H 2 0 -6.12 CISPEP 2 PHE H 150 PRO H 151 0 -4.91 CISPEP 3 GLU H 152 SER H 153 0 4.87 CISPEP 4 TRP H 192 PRO H 193 0 12.50 CISPEP 5 THR L 7 PRO L 8 0 -3.52 CISPEP 6 TYR L 144 PRO L 145 0 3.94 CRYST1 196.140 40.643 59.069 90.00 103.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005098 0.000000 0.001184 0.00000 SCALE2 0.000000 0.024604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017380 0.00000