HEADER HYDROLASE 20-DEC-11 3V6L TITLE CRYSTAL STRUCTURE OF CASPASE-6 INACTIVATION MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-293; COMPND 5 SYNONYM: CASP-6, APOPTOTIC PROTEASE MCH-2, CASPASE-6 SUBUNIT P18, COMPND 6 CASPASE-6 SUBUNIT P11; COMPND 7 EC: 3.4.22.59; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOPTOTIC PROTEASE, CASPASE DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.CAO,X.J.WANG,D.F.LIU,L.F.LI,X.D.SU REVDAT 3 08-NOV-23 3V6L 1 SEQADV REVDAT 2 13-JUN-12 3V6L 1 COMPND JRNL REVDAT 1 28-MAR-12 3V6L 0 JRNL AUTH Q.CAO,X.J.WANG,C.W.LIU,D.F.LIU,L.F.LI,Y.Q.GAO,X.D.SU JRNL TITL INHIBITORY MECHANISM OF CASPASE-6 PHOSPHORYLATION REVEALED JRNL TITL 2 BY CRYSTAL STRUCTURES, MOLECULAR DYNAMICS SIMULATIONS, AND JRNL TITL 3 BIOCHEMICAL ASSAYS JRNL REF J.BIOL.CHEM. V. 287 15371 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22433863 JRNL DOI 10.1074/JBC.M112.351213 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 39831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8672 - 4.7206 1.00 4067 228 0.1712 0.1998 REMARK 3 2 4.7206 - 3.7552 1.00 3894 201 0.1303 0.1532 REMARK 3 3 3.7552 - 3.2829 1.00 3819 210 0.1537 0.1650 REMARK 3 4 3.2829 - 2.9839 1.00 3795 199 0.1727 0.2269 REMARK 3 5 2.9839 - 2.7706 1.00 3784 197 0.1845 0.2490 REMARK 3 6 2.7706 - 2.6076 1.00 3758 212 0.1764 0.2089 REMARK 3 7 2.6076 - 2.4773 1.00 3768 177 0.1631 0.2007 REMARK 3 8 2.4773 - 2.3696 1.00 3762 201 0.1595 0.2052 REMARK 3 9 2.3696 - 2.2785 1.00 3744 204 0.1821 0.2403 REMARK 3 10 2.2785 - 2.2000 0.92 3440 171 0.2775 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 40.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.67680 REMARK 3 B22 (A**2) : 7.67680 REMARK 3 B33 (A**2) : -15.35360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3862 REMARK 3 ANGLE : 1.052 5208 REMARK 3 CHIRALITY : 0.075 571 REMARK 3 PLANARITY : 0.004 662 REMARK 3 DIHEDRAL : 12.790 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 31:166) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3081 59.8111 -15.0187 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.3786 REMARK 3 T33: 0.2408 T12: 0.1486 REMARK 3 T13: -0.0136 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.2845 L22: 0.5407 REMARK 3 L33: 1.4784 L12: -0.0221 REMARK 3 L13: 0.3357 L23: -0.1031 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.0035 S13: -0.0382 REMARK 3 S21: -0.0598 S22: 0.1040 S23: 0.1132 REMARK 3 S31: -0.2850 S32: -0.5284 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 187:292) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4247 46.7214 -7.3924 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.3672 REMARK 3 T33: 0.2737 T12: 0.0717 REMARK 3 T13: 0.0013 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 1.0716 L22: 0.5449 REMARK 3 L33: 1.2736 L12: 0.0433 REMARK 3 L13: 0.5818 L23: -0.4236 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0917 S13: -0.1828 REMARK 3 S21: 0.0012 S22: 0.1568 S23: -0.0336 REMARK 3 S31: 0.1586 S32: -0.4500 S33: -0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 31:166) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1442 41.6971 -6.8798 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2660 REMARK 3 T33: 0.2375 T12: 0.1336 REMARK 3 T13: -0.0035 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1296 L22: 0.5835 REMARK 3 L33: 1.6649 L12: -0.0799 REMARK 3 L13: -0.2252 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -0.0011 S13: -0.0323 REMARK 3 S21: -0.1022 S22: 0.0834 S23: -0.1042 REMARK 3 S31: 0.2982 S32: 0.2304 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 187:292) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2869 56.0951 -4.1000 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.2529 REMARK 3 T33: 0.2465 T12: 0.0870 REMARK 3 T13: -0.0338 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.6284 L22: 0.6533 REMARK 3 L33: 0.5685 L12: -0.0925 REMARK 3 L13: -0.0931 L23: 0.3497 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0569 S13: 0.1530 REMARK 3 S21: -0.0950 S22: 0.1118 S23: 0.0492 REMARK 3 S31: -0.1710 S32: 0.0509 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3NR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 10% PEG3350, 0.2M SODIUM REMARK 280 CHLORIDE, PH 6.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.27333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.91000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.63667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 138.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 110.54667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.27333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.63667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.91000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 138.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 484 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 TYR A 26 REMARK 465 LYS A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 MET A 30 REMARK 465 GLN A 167 REMARK 465 HIS A 168 REMARK 465 ASP A 169 REMARK 465 VAL A 170 REMARK 465 PRO A 171 REMARK 465 VAL A 172 REMARK 465 ILE A 173 REMARK 465 PRO A 174 REMARK 465 LEU A 175 REMARK 465 ASP A 176 REMARK 465 VAL A 177 REMARK 465 VAL A 178 REMARK 465 ASP A 179 REMARK 465 ASN A 180 REMARK 465 GLN A 181 REMARK 465 THR A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 LEU A 185 REMARK 465 ASP A 186 REMARK 465 CYS A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 ASN A 293 REMARK 465 LEU A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 20 REMARK 465 GLU B 21 REMARK 465 THR B 22 REMARK 465 ASP B 23 REMARK 465 ALA B 24 REMARK 465 PHE B 25 REMARK 465 TYR B 26 REMARK 465 LYS B 27 REMARK 465 ARG B 28 REMARK 465 GLU B 29 REMARK 465 GLN B 167 REMARK 465 HIS B 168 REMARK 465 ASP B 169 REMARK 465 VAL B 170 REMARK 465 PRO B 171 REMARK 465 VAL B 172 REMARK 465 ILE B 173 REMARK 465 PRO B 174 REMARK 465 LEU B 175 REMARK 465 ASP B 176 REMARK 465 VAL B 177 REMARK 465 VAL B 178 REMARK 465 ASP B 179 REMARK 465 ASN B 180 REMARK 465 GLN B 181 REMARK 465 THR B 182 REMARK 465 GLU B 183 REMARK 465 LYS B 184 REMARK 465 LEU B 185 REMARK 465 ASP B 186 REMARK 465 PHE B 263 REMARK 465 CYS B 264 REMARK 465 ASN B 293 REMARK 465 LEU B 294 REMARK 465 GLU B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 NE CZ NH1 NH2 REMARK 470 ARG A 54 CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 HIS A 149 ND1 CD2 CE1 NE2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 THR A 187 OG1 CG2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 263 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 292 OG REMARK 470 MET B 30 CG SD CE REMARK 470 ARG B 65 CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 123 OE1 OE2 REMARK 470 GLN B 137 CG CD OE1 NE2 REMARK 470 ASP B 146 CB CG OD1 OD2 REMARK 470 THR B 187 OG1 CG2 REMARK 470 GLU B 214 OE1 OE2 REMARK 470 ARG B 260 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 261 CG1 CG2 REMARK 470 ASP B 262 CG OD1 OD2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 LYS B 285 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 287 NE2 HIS A 287 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 288 56.54 -116.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V6M RELATED DB: PDB REMARK 900 RELATED ID: 3NR2 RELATED DB: PDB REMARK 900 RELATED ID: 3OD5 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTAGENESIS. SUPPRESSION OF CASPASE-6 ACTIVATION. DBREF 3V6L A 21 293 UNP P55212 CASP6_HUMAN 21 293 DBREF 3V6L B 21 293 UNP P55212 CASP6_HUMAN 21 293 SEQADV 3V6L MET A 20 UNP P55212 EXPRESSION TAG SEQADV 3V6L GLU A 257 UNP P55212 SER 257 SEE REMARK 999 SEQADV 3V6L LEU A 294 UNP P55212 EXPRESSION TAG SEQADV 3V6L GLU A 295 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 296 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 297 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 298 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 299 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 300 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS A 301 UNP P55212 EXPRESSION TAG SEQADV 3V6L MET B 20 UNP P55212 EXPRESSION TAG SEQADV 3V6L GLU B 257 UNP P55212 SER 257 SEE REMARK 999 SEQADV 3V6L LEU B 294 UNP P55212 EXPRESSION TAG SEQADV 3V6L GLU B 295 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 296 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 297 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 298 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 299 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 300 UNP P55212 EXPRESSION TAG SEQADV 3V6L HIS B 301 UNP P55212 EXPRESSION TAG SEQRES 1 A 282 MET GLU THR ASP ALA PHE TYR LYS ARG GLU MET PHE ASP SEQRES 2 A 282 PRO ALA GLU LYS TYR LYS MET ASP HIS ARG ARG ARG GLY SEQRES 3 A 282 ILE ALA LEU ILE PHE ASN HIS GLU ARG PHE PHE TRP HIS SEQRES 4 A 282 LEU THR LEU PRO GLU ARG ARG GLY THR CYS ALA ASP ARG SEQRES 5 A 282 ASP ASN LEU THR ARG ARG PHE SER ASP LEU GLY PHE GLU SEQRES 6 A 282 VAL LYS CYS PHE ASN ASP LEU LYS ALA GLU GLU LEU LEU SEQRES 7 A 282 LEU LYS ILE HIS GLU VAL SER THR VAL SER HIS ALA ASP SEQRES 8 A 282 ALA ASP CYS PHE VAL CYS VAL PHE LEU SER HIS GLY GLU SEQRES 9 A 282 GLY ASN HIS ILE TYR ALA TYR ASP ALA LYS ILE GLU ILE SEQRES 10 A 282 GLN THR LEU THR GLY LEU PHE LYS GLY ASP LYS CYS HIS SEQRES 11 A 282 SER LEU VAL GLY LYS PRO LYS ILE PHE ILE ILE GLN ALA SEQRES 12 A 282 CYS ARG GLY ASN GLN HIS ASP VAL PRO VAL ILE PRO LEU SEQRES 13 A 282 ASP VAL VAL ASP ASN GLN THR GLU LYS LEU ASP THR ASN SEQRES 14 A 282 ILE THR GLU VAL ASP ALA ALA SER VAL TYR THR LEU PRO SEQRES 15 A 282 ALA GLY ALA ASP PHE LEU MET CYS TYR SER VAL ALA GLU SEQRES 16 A 282 GLY TYR TYR SER HIS ARG GLU THR VAL ASN GLY SER TRP SEQRES 17 A 282 TYR ILE GLN ASP LEU CYS GLU MET LEU GLY LYS TYR GLY SEQRES 18 A 282 SER SER LEU GLU PHE THR GLU LEU LEU THR LEU VAL ASN SEQRES 19 A 282 ARG LYS VAL GLU GLN ARG ARG VAL ASP PHE CYS LYS ASP SEQRES 20 A 282 PRO SER ALA ILE GLY LYS LYS GLN VAL PRO CYS PHE ALA SEQRES 21 A 282 SER MET LEU THR LYS LYS LEU HIS PHE PHE PRO LYS SER SEQRES 22 A 282 ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 282 MET GLU THR ASP ALA PHE TYR LYS ARG GLU MET PHE ASP SEQRES 2 B 282 PRO ALA GLU LYS TYR LYS MET ASP HIS ARG ARG ARG GLY SEQRES 3 B 282 ILE ALA LEU ILE PHE ASN HIS GLU ARG PHE PHE TRP HIS SEQRES 4 B 282 LEU THR LEU PRO GLU ARG ARG GLY THR CYS ALA ASP ARG SEQRES 5 B 282 ASP ASN LEU THR ARG ARG PHE SER ASP LEU GLY PHE GLU SEQRES 6 B 282 VAL LYS CYS PHE ASN ASP LEU LYS ALA GLU GLU LEU LEU SEQRES 7 B 282 LEU LYS ILE HIS GLU VAL SER THR VAL SER HIS ALA ASP SEQRES 8 B 282 ALA ASP CYS PHE VAL CYS VAL PHE LEU SER HIS GLY GLU SEQRES 9 B 282 GLY ASN HIS ILE TYR ALA TYR ASP ALA LYS ILE GLU ILE SEQRES 10 B 282 GLN THR LEU THR GLY LEU PHE LYS GLY ASP LYS CYS HIS SEQRES 11 B 282 SER LEU VAL GLY LYS PRO LYS ILE PHE ILE ILE GLN ALA SEQRES 12 B 282 CYS ARG GLY ASN GLN HIS ASP VAL PRO VAL ILE PRO LEU SEQRES 13 B 282 ASP VAL VAL ASP ASN GLN THR GLU LYS LEU ASP THR ASN SEQRES 14 B 282 ILE THR GLU VAL ASP ALA ALA SER VAL TYR THR LEU PRO SEQRES 15 B 282 ALA GLY ALA ASP PHE LEU MET CYS TYR SER VAL ALA GLU SEQRES 16 B 282 GLY TYR TYR SER HIS ARG GLU THR VAL ASN GLY SER TRP SEQRES 17 B 282 TYR ILE GLN ASP LEU CYS GLU MET LEU GLY LYS TYR GLY SEQRES 18 B 282 SER SER LEU GLU PHE THR GLU LEU LEU THR LEU VAL ASN SEQRES 19 B 282 ARG LYS VAL GLU GLN ARG ARG VAL ASP PHE CYS LYS ASP SEQRES 20 B 282 PRO SER ALA ILE GLY LYS LYS GLN VAL PRO CYS PHE ALA SEQRES 21 B 282 SER MET LEU THR LYS LYS LEU HIS PHE PHE PRO LYS SER SEQRES 22 B 282 ASN LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *276(H2 O) HELIX 1 1 PHE A 56 THR A 60 5 5 HELIX 2 2 GLY A 66 LEU A 81 1 16 HELIX 3 3 LYS A 92 VAL A 106 1 15 HELIX 4 4 ILE A 136 GLY A 141 1 6 HELIX 5 5 LEU A 142 VAL A 152 5 11 HELIX 6 6 TRP A 227 GLY A 240 1 14 HELIX 7 7 GLU A 244 GLN A 258 1 15 HELIX 8 8 PHE B 56 THR B 60 5 5 HELIX 9 9 GLY B 66 LEU B 81 1 16 HELIX 10 10 LYS B 92 VAL B 106 1 15 HELIX 11 11 ILE B 136 LEU B 142 1 7 HELIX 12 12 PHE B 143 VAL B 152 5 10 HELIX 13 13 TRP B 227 GLY B 240 1 14 HELIX 14 14 GLU B 244 ARG B 259 1 16 HELIX 15 15 ASP B 266 ILE B 270 5 5 SHEET 1 A12 GLU A 84 ASN A 89 0 SHEET 2 A12 ILE A 46 ASN A 51 1 N ASN A 51 O PHE A 88 SHEET 3 A12 PHE A 114 GLU A 123 1 O VAL A 117 N LEU A 48 SHEET 4 A12 LYS A 156 CYS A 163 1 O ILE A 157 N PHE A 114 SHEET 5 A12 PHE A 206 TYR A 210 1 O CYS A 209 N ILE A 160 SHEET 6 A12 CYS A 277 SER A 280 -1 O ALA A 279 N MET A 208 SHEET 7 A12 CYS B 277 SER B 280 -1 O PHE B 278 N SER A 280 SHEET 8 A12 PHE B 206 TYR B 210 -1 N MET B 208 O ALA B 279 SHEET 9 A12 LYS B 156 CYS B 163 1 N PHE B 158 O CYS B 209 SHEET 10 A12 PHE B 114 GLU B 123 1 N PHE B 118 O GLN B 161 SHEET 11 A12 ILE B 46 ASN B 51 1 N LEU B 48 O VAL B 117 SHEET 12 A12 GLU B 84 ASN B 89 1 O LYS B 86 N ILE B 49 SHEET 1 B12 LYS A 133 GLU A 135 0 SHEET 2 B12 HIS A 126 TYR A 128 -1 N ILE A 127 O ILE A 134 SHEET 3 B12 PHE A 114 GLU A 123 -1 N GLU A 123 O HIS A 126 SHEET 4 B12 LYS A 156 CYS A 163 1 O ILE A 157 N PHE A 114 SHEET 5 B12 PHE A 206 TYR A 210 1 O CYS A 209 N ILE A 160 SHEET 6 B12 CYS A 277 SER A 280 -1 O ALA A 279 N MET A 208 SHEET 7 B12 CYS B 277 SER B 280 -1 O PHE B 278 N SER A 280 SHEET 8 B12 PHE B 206 TYR B 210 -1 N MET B 208 O ALA B 279 SHEET 9 B12 LYS B 156 CYS B 163 1 N PHE B 158 O CYS B 209 SHEET 10 B12 PHE B 114 GLU B 123 1 N PHE B 118 O GLN B 161 SHEET 11 B12 HIS B 126 TYR B 128 -1 O HIS B 126 N GLU B 123 SHEET 12 B12 LYS B 133 GLU B 135 -1 O ILE B 134 N ILE B 127 SHEET 1 C 3 THR A 190 ALA A 194 0 SHEET 2 C 3 TYR A 217 GLU A 221 -1 O SER A 218 N ASP A 193 SHEET 3 C 3 GLY A 225 SER A 226 -1 O GLY A 225 N GLU A 221 SHEET 1 D 3 THR B 190 ALA B 194 0 SHEET 2 D 3 TYR B 217 GLU B 221 -1 O ARG B 220 N GLU B 191 SHEET 3 D 3 GLY B 225 SER B 226 -1 O GLY B 225 N GLU B 221 CISPEP 1 GLY B 165 ASN B 166 0 1.67 CRYST1 126.350 126.350 165.820 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007915 0.004569 0.000000 0.00000 SCALE2 0.000000 0.009139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006031 0.00000