HEADER IMMUNE SYSTEM 20-DEC-11 3V70 TITLE CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE IMAP FAMILY MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-253; COMPND 5 SYNONYM: IMMUNITY-ASSOCIATED PROTEIN 1, HIMAP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GIMAP1, IMAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS IMMUNITY, STRUCTURAL GENOMICS CONSORTIUM, GTPASE, IMMUNITY-ASSOCIATED KEYWDS 2 PROTEIN, SGC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,Y.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,D.W.ANDREWS,H.PARK, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3V70 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3V70 1 REMARK REVDAT 1 11-JAN-12 3V70 0 SPRSDE 11-JAN-12 3V70 3LXW JRNL AUTH L.NEDYALKOVA,Y.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 D.W.ANDREWS,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 21544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.851 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3303 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2157 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4501 ; 1.256 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5215 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 5.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;28.870 ;22.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;14.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3762 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 711 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 251 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 RESIDUE RANGE : A 1 A 3 REMARK 3 RESIDUE RANGE : A 254 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6451 17.7059 120.5044 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0415 REMARK 3 T33: 0.0403 T12: -0.0338 REMARK 3 T13: -0.0232 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 4.0404 L22: 2.6494 REMARK 3 L33: 2.5159 L12: 0.0989 REMARK 3 L13: -0.8641 L23: -0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.0426 S13: 0.0208 REMARK 3 S21: 0.1603 S22: -0.0761 S23: -0.1974 REMARK 3 S31: 0.0183 S32: -0.0646 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 251 REMARK 3 RESIDUE RANGE : B 401 B 402 REMARK 3 RESIDUE RANGE : B 4 B 6 REMARK 3 RESIDUE RANGE : B 254 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0715 29.8989 90.9176 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1047 REMARK 3 T33: 0.0311 T12: -0.0365 REMARK 3 T13: -0.0260 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.3615 L22: 4.5093 REMARK 3 L33: 3.2222 L12: 0.0733 REMARK 3 L13: 0.1677 L23: -0.7740 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.0826 S13: 0.1912 REMARK 3 S21: -0.0025 S22: -0.1249 S23: 0.0089 REMARK 3 S31: -0.4412 S32: 0.1222 S33: 0.0432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 WITH TLS ADDED REMARK 3 PROGRAMS PHENIX, ARP/WARP AND COOT WERE ALSO USED DURING REMARK 3 REFINEMENT, AS WAS THE MOLPROBITY SERVER. REMARK 4 REMARK 4 3V70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF GIMAP4. RELATED TO PDB ENTRY REMARK 200 3LXX. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG3350, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M HEPES. GDP AND 1:100 DISPASE WERE ALSO ADDED., PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.67400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.48314 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.67400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.48314 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.67400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.48314 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.96629 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 119.28933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.96629 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 119.28933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.96629 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 119.28933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 ASN A 19 REMARK 465 LEU A 20 REMARK 465 TYR A 21 REMARK 465 PHE A 22 REMARK 465 GLN A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 PHE A 54 REMARK 465 SER A 55 REMARK 465 ARG A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 58 REMARK 465 ALA A 59 REMARK 465 THR A 60 REMARK 465 SER A 61 REMARK 465 VAL A 62 REMARK 465 GLN A 252 REMARK 465 ARG A 253 REMARK 465 MET B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 GLU B 18 REMARK 465 ASN B 19 REMARK 465 LEU B 20 REMARK 465 TYR B 21 REMARK 465 PHE B 22 REMARK 465 GLN B 23 REMARK 465 GLY B 24 REMARK 465 GLU B 25 REMARK 465 SER B 26 REMARK 465 PHE B 54 REMARK 465 SER B 55 REMARK 465 ARG B 56 REMARK 465 LEU B 57 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 SER B 61 REMARK 465 VAL B 62 REMARK 465 LEU B 157 REMARK 465 ALA B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 SER B 161 REMARK 465 GLN B 252 REMARK 465 ARG B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 26 OG REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 71 NH1 NH2 REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 THR A 94 OG1 CG2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 163 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 167 OG REMARK 470 THR A 169 OG1 CG2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 GLN A 203 CD OE1 NE2 REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 246 NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 74 CG OD1 OD2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 SER B 92 OG REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 THR B 94 OG1 CG2 REMARK 470 GLU B 99 CD OE1 OE2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 133 CD NE CZ NH1 NH2 REMARK 470 ARG B 153 NE CZ NH1 NH2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 470 ASP B 156 O REMARK 470 HIS B 163 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 VAL B 166 CG1 CG2 REMARK 470 SER B 167 OG REMARK 470 ASN B 168 CG OD1 ND2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 470 THR B 193 OG1 CG2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU B 198 CD OE1 OE2 REMARK 470 GLN B 203 CD OE1 NE2 REMARK 470 GLU B 214 CD OE1 OE2 REMARK 470 LYS B 216 CD CE NZ REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 77 CG HIS A 77 CD2 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -116.61 60.05 REMARK 500 ARG A 123 53.74 -144.70 REMARK 500 ASP B 74 -114.97 60.53 REMARK 500 PRO B 84 -159.99 -86.68 REMARK 500 ARG B 123 49.35 -142.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 1 O REMARK 620 2 HOH A 2 O 98.1 REMARK 620 3 HOH A 3 O 78.6 89.8 REMARK 620 4 SER A 41 OG 166.3 80.5 87.8 REMARK 620 5 GDP A 401 O3B 103.2 89.7 178.2 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 4 O REMARK 620 2 HOH B 5 O 86.5 REMARK 620 3 HOH B 6 O 107.6 83.6 REMARK 620 4 SER B 41 OG 80.0 83.2 164.3 REMARK 620 5 GDP B 401 O3B 98.6 167.1 105.8 86.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 DBREF 3V70 A 25 253 UNP Q8WWP7 GIMA1_HUMAN 25 253 DBREF 3V70 B 25 253 UNP Q8WWP7 GIMA1_HUMAN 25 253 SEQADV 3V70 MET A 7 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 8 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 9 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 10 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 11 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 12 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS A 13 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 SER A 14 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 SER A 15 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLY A 16 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 ARG A 17 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLU A 18 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 ASN A 19 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 LEU A 20 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 TYR A 21 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 PHE A 22 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLN A 23 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLY A 24 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 VAL A 202 UNP Q8WWP7 GLU 202 CONFLICT SEQADV 3V70 MET B 7 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 8 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 9 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 10 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 11 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 12 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 HIS B 13 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 SER B 14 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 SER B 15 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLY B 16 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 ARG B 17 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLU B 18 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 ASN B 19 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 LEU B 20 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 TYR B 21 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 PHE B 22 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLN B 23 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 GLY B 24 UNP Q8WWP7 EXPRESSION TAG SEQADV 3V70 VAL B 202 UNP Q8WWP7 GLU 202 CONFLICT SEQRES 1 A 247 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 247 LEU TYR PHE GLN GLY GLU SER THR ARG ARG LEU ILE LEU SEQRES 3 A 247 VAL GLY ARG THR GLY ALA GLY LYS SER ALA THR GLY ASN SEQRES 4 A 247 SER ILE LEU GLY GLN ARG ARG PHE PHE SER ARG LEU GLY SEQRES 5 A 247 ALA THR SER VAL THR ARG ALA CYS THR THR GLY SER ARG SEQRES 6 A 247 ARG TRP ASP LYS CYS HIS VAL GLU VAL VAL ASP THR PRO SEQRES 7 A 247 ASP ILE PHE SER SER GLN VAL SER LYS THR ASP PRO GLY SEQRES 8 A 247 CYS GLU GLU ARG GLY HIS CYS TYR LEU LEU SER ALA PRO SEQRES 9 A 247 GLY PRO HIS ALA LEU LEU LEU VAL THR GLN LEU GLY ARG SEQRES 10 A 247 PHE THR ALA GLN ASP GLN GLN ALA VAL ARG GLN VAL ARG SEQRES 11 A 247 ASP MET PHE GLY GLU ASP VAL LEU LYS TRP MET VAL ILE SEQRES 12 A 247 VAL PHE THR ARG LYS GLU ASP LEU ALA GLY GLY SER LEU SEQRES 13 A 247 HIS ASP TYR VAL SER ASN THR GLU ASN ARG ALA LEU ARG SEQRES 14 A 247 GLU LEU VAL ALA GLU CYS GLY GLY ARG VAL CYS ALA PHE SEQRES 15 A 247 ASP ASN ARG ALA THR GLY ARG GLU GLN GLU ALA GLN VAL SEQRES 16 A 247 VAL GLN LEU LEU GLY MET VAL GLU GLY LEU VAL LEU GLU SEQRES 17 A 247 HIS LYS GLY ALA HIS TYR SER ASN GLU VAL TYR GLU LEU SEQRES 18 A 247 ALA GLN VAL LEU ARG TRP ALA GLY PRO GLU GLU ARG LEU SEQRES 19 A 247 ARG ARG VAL ALA GLU ARG VAL ALA ALA ARG VAL GLN ARG SEQRES 1 B 247 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 247 LEU TYR PHE GLN GLY GLU SER THR ARG ARG LEU ILE LEU SEQRES 3 B 247 VAL GLY ARG THR GLY ALA GLY LYS SER ALA THR GLY ASN SEQRES 4 B 247 SER ILE LEU GLY GLN ARG ARG PHE PHE SER ARG LEU GLY SEQRES 5 B 247 ALA THR SER VAL THR ARG ALA CYS THR THR GLY SER ARG SEQRES 6 B 247 ARG TRP ASP LYS CYS HIS VAL GLU VAL VAL ASP THR PRO SEQRES 7 B 247 ASP ILE PHE SER SER GLN VAL SER LYS THR ASP PRO GLY SEQRES 8 B 247 CYS GLU GLU ARG GLY HIS CYS TYR LEU LEU SER ALA PRO SEQRES 9 B 247 GLY PRO HIS ALA LEU LEU LEU VAL THR GLN LEU GLY ARG SEQRES 10 B 247 PHE THR ALA GLN ASP GLN GLN ALA VAL ARG GLN VAL ARG SEQRES 11 B 247 ASP MET PHE GLY GLU ASP VAL LEU LYS TRP MET VAL ILE SEQRES 12 B 247 VAL PHE THR ARG LYS GLU ASP LEU ALA GLY GLY SER LEU SEQRES 13 B 247 HIS ASP TYR VAL SER ASN THR GLU ASN ARG ALA LEU ARG SEQRES 14 B 247 GLU LEU VAL ALA GLU CYS GLY GLY ARG VAL CYS ALA PHE SEQRES 15 B 247 ASP ASN ARG ALA THR GLY ARG GLU GLN GLU ALA GLN VAL SEQRES 16 B 247 VAL GLN LEU LEU GLY MET VAL GLU GLY LEU VAL LEU GLU SEQRES 17 B 247 HIS LYS GLY ALA HIS TYR SER ASN GLU VAL TYR GLU LEU SEQRES 18 B 247 ALA GLN VAL LEU ARG TRP ALA GLY PRO GLU GLU ARG LEU SEQRES 19 B 247 ARG ARG VAL ALA GLU ARG VAL ALA ALA ARG VAL GLN ARG HET GDP A 401 28 HET MG A 402 1 HET GDP B 401 28 HET MG B 402 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *44(H2 O) HELIX 1 1 GLY A 39 GLY A 49 1 11 HELIX 2 2 GLN A 90 ASP A 95 1 6 HELIX 3 3 CYS A 98 ALA A 109 1 12 HELIX 4 4 THR A 125 GLY A 140 1 16 HELIX 5 5 GLU A 141 LYS A 145 5 5 HELIX 6 6 ARG A 153 ALA A 158 5 6 HELIX 7 7 SER A 161 THR A 169 1 9 HELIX 8 8 ASN A 171 CYS A 181 1 11 HELIX 9 9 THR A 193 HIS A 215 1 23 HELIX 10 10 ASN A 222 LEU A 231 1 10 HELIX 11 11 ARG A 232 ALA A 234 5 3 HELIX 12 12 GLY A 235 VAL A 251 1 17 HELIX 13 13 GLY B 39 GLY B 49 1 11 HELIX 14 14 GLN B 90 ASP B 95 1 6 HELIX 15 15 CYS B 98 ALA B 109 1 12 HELIX 16 16 THR B 125 GLY B 140 1 16 HELIX 17 17 GLU B 141 LYS B 145 5 5 HELIX 18 18 HIS B 163 THR B 169 1 7 HELIX 19 19 ASN B 171 CYS B 181 1 11 HELIX 20 20 THR B 193 HIS B 215 1 23 HELIX 21 21 ASN B 222 LEU B 231 1 10 HELIX 22 22 ARG B 232 ALA B 234 5 3 HELIX 23 23 GLY B 235 VAL B 251 1 17 SHEET 1 A 6 THR A 67 TRP A 73 0 SHEET 2 A 6 CYS A 76 ASP A 82 -1 O VAL A 80 N GLY A 69 SHEET 3 A 6 THR A 27 VAL A 33 1 N LEU A 30 O GLU A 79 SHEET 4 A 6 ALA A 114 GLN A 120 1 O LEU A 116 N ILE A 31 SHEET 5 A 6 MET A 147 THR A 152 1 O THR A 152 N THR A 119 SHEET 6 A 6 VAL A 185 ALA A 187 1 O CYS A 186 N PHE A 151 SHEET 1 B 6 THR B 67 TRP B 73 0 SHEET 2 B 6 CYS B 76 ASP B 82 -1 O VAL B 80 N GLY B 69 SHEET 3 B 6 ARG B 28 VAL B 33 1 N ARG B 28 O GLU B 79 SHEET 4 B 6 ALA B 114 GLN B 120 1 O LEU B 116 N ILE B 31 SHEET 5 B 6 MET B 147 THR B 152 1 O THR B 152 N THR B 119 SHEET 6 B 6 VAL B 185 ALA B 187 1 O CYS B 186 N PHE B 151 LINK O HOH A 1 MG MG A 402 1555 1555 2.09 LINK O HOH A 2 MG MG A 402 1555 1555 2.10 LINK O HOH A 3 MG MG A 402 1555 1555 1.97 LINK OG SER A 41 MG MG A 402 1555 1555 2.23 LINK O3B GDP A 401 MG MG A 402 1555 1555 1.98 LINK O HOH B 4 MG MG B 402 1555 1555 2.00 LINK O HOH B 5 MG MG B 402 1555 1555 2.10 LINK O HOH B 6 MG MG B 402 1555 1555 2.01 LINK OG SER B 41 MG MG B 402 1555 1555 2.32 LINK O3B GDP B 401 MG MG B 402 1555 1555 2.13 CISPEP 1 ALA A 109 PRO A 110 0 1.67 CISPEP 2 ALA B 109 PRO B 110 0 0.13 SITE 1 AC1 19 HOH A 1 HOH A 2 ARG A 35 GLY A 37 SITE 2 AC1 19 ALA A 38 GLY A 39 LYS A 40 SER A 41 SITE 3 AC1 19 ALA A 42 GLN A 120 THR A 152 ARG A 153 SITE 4 AC1 19 GLU A 155 PHE A 188 ASP A 189 ASN A 190 SITE 5 AC1 19 ARG A 191 HOH A 265 MG A 402 SITE 1 AC2 5 HOH A 1 HOH A 2 HOH A 3 SER A 41 SITE 2 AC2 5 GDP A 401 SITE 1 AC3 16 HOH B 6 ARG B 35 GLY B 37 ALA B 38 SITE 2 AC3 16 GLY B 39 LYS B 40 SER B 41 ALA B 42 SITE 3 AC3 16 THR B 152 ARG B 153 PHE B 188 ASP B 189 SITE 4 AC3 16 ASN B 190 ARG B 191 HOH B 266 MG B 402 SITE 1 AC4 5 HOH B 4 HOH B 5 HOH B 6 SER B 41 SITE 2 AC4 5 GDP B 401 CRYST1 81.348 81.348 178.934 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012293 0.007097 0.000000 0.00000 SCALE2 0.000000 0.014195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005589 0.00000