HEADER LYASE 21-DEC-11 3V7N TITLE CRYSTAL STRUCTURE OF THREONINE SYNTHASE (THRC) FROM FROM BURKHOLDERIA TITLE 2 THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: THRC, BTH_I2199; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3V7N 1 REMARK SEQADV REVDAT 3 29-APR-15 3V7N 1 HETSYN REVDAT 2 30-OCT-13 3V7N 1 JRNL REVDAT 1 11-JAN-12 3V7N 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 97538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 321 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.587 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3673 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2467 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4973 ; 1.767 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5951 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;33.786 ;23.277 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;11.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;13.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4206 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 810 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3760 10.9810 7.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0101 REMARK 3 T33: 0.0311 T12: 0.0008 REMARK 3 T13: 0.0049 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.3257 L22: 0.0289 REMARK 3 L33: 0.2941 L12: -0.0100 REMARK 3 L13: -0.1292 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0250 S13: -0.0663 REMARK 3 S21: 0.0051 S22: -0.0020 S23: -0.0042 REMARK 3 S31: -0.0312 S32: 0.0047 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9480 -2.8480 19.9630 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0220 REMARK 3 T33: 0.0300 T12: 0.0094 REMARK 3 T13: 0.0153 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.3293 L22: 0.6322 REMARK 3 L33: 0.6569 L12: 0.0957 REMARK 3 L13: 0.0310 L23: -0.5799 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0126 S13: -0.0692 REMARK 3 S21: -0.1142 S22: -0.0305 S23: -0.0660 REMARK 3 S31: 0.1237 S32: 0.0287 S33: 0.0499 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 383 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9000 4.4730 1.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0180 REMARK 3 T33: 0.0276 T12: -0.0020 REMARK 3 T13: -0.0072 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 0.1007 REMARK 3 L33: 0.3278 L12: -0.0396 REMARK 3 L13: 0.0022 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0114 S13: -0.1045 REMARK 3 S21: -0.0122 S22: -0.0002 S23: 0.0187 REMARK 3 S31: 0.0114 S32: -0.0743 S33: -0.0218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3V7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033180 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97539 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.840 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.78 REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KL7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS INTERNAL TRACKING NUMBER 225991F9: REMARK 280 WIZARD3/4 F9. 25% PEG 1500, 0.1 M MIB BUFFER/HCL PH 5.0. REMARK 280 BUTHA.00545.A.A1 PW33400 AT 44.8 MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 313 REMARK 465 SER A 314 REMARK 465 ALA A 315 REMARK 465 GLN A 316 REMARK 465 ASP A 317 REMARK 465 THR A 318 REMARK 465 TYR A 319 REMARK 465 HIS A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 SER A 323 REMARK 465 PRO A 324 REMARK 465 SER A 325 REMARK 465 MET A 326 REMARK 465 ASP A 327 REMARK 465 ILE A 328 REMARK 465 SER A 329 REMARK 465 LYS A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 312 CG1 CG2 REMARK 470 SER A 332 OG REMARK 470 ARG A 354 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 GLN A 358 CG CD OE1 NE2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 813 O HOH A 957 2.07 REMARK 500 O HOH A 787 O HOH A 935 2.10 REMARK 500 O HOH A 635 O HOH A 933 2.18 REMARK 500 O HOH A 731 O HOH A 930 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 768 O HOH A 795 2554 2.16 REMARK 500 O HOH A 808 O HOH A 922 2554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 191 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 86 50.35 -100.24 REMARK 500 HIS A 88 52.10 -91.72 REMARK 500 ILE A 98 -58.81 72.18 REMARK 500 THR A 99 78.17 -115.95 REMARK 500 GLU A 289 -76.35 -84.69 REMARK 500 ASN A 296 -125.56 43.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BO3 A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BO3 A 491 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.00545.A RELATED DB: TARGETDB DBREF 3V7N A 1 483 UNP Q2SWH9 Q2SWH9_BURTA 1 483 SEQADV 3V7N GLY A -3 UNP Q2SWH9 EXPRESSION TAG SEQADV 3V7N PRO A -2 UNP Q2SWH9 EXPRESSION TAG SEQADV 3V7N GLY A -1 UNP Q2SWH9 EXPRESSION TAG SEQADV 3V7N SER A 0 UNP Q2SWH9 EXPRESSION TAG SEQRES 1 A 487 GLY PRO GLY SER MET ASN TYR ILE SER THR ARG GLY ALA SEQRES 2 A 487 GLY ILE GLY GLU ARG HIS THR PHE SER ASP ILE LEU LEU SEQRES 3 A 487 GLY GLY LEU ALA LYS ASP GLY GLY LEU TYR LEU PRO SER SEQRES 4 A 487 GLU TYR PRO GLN VAL SER ALA ASP GLU LEU ALA ARG TRP SEQRES 5 A 487 ARG THR LEU PRO TYR ALA ASP LEU ALA PHE GLU ILE LEU SEQRES 6 A 487 SER LYS PHE CYS ASP ASP ILE ALA ALA ALA ASP LEU ARG SEQRES 7 A 487 ALA ILE THR ARG ARG THR TYR THR ALA ASP VAL TYR ARG SEQRES 8 A 487 HIS ALA ARG ARG GLY GLY ASN ALA ALA ASP ILE THR PRO SEQRES 9 A 487 LEU THR THR LEU GLY THR GLU ASN GLY ALA PRO VAL SER SEQRES 10 A 487 LEU LEU GLU LEU SER ASN GLY PRO THR LEU ALA PHE LYS SEQRES 11 A 487 ASP MET ALA MET GLN LEU LEU GLY ASN LEU PHE GLU TYR SEQRES 12 A 487 THR LEU ALA LYS HIS GLY GLU THR LEU ASN ILE LEU GLY SEQRES 13 A 487 ALA THR SER GLY ASP THR GLY SER ALA ALA GLU TYR ALA SEQRES 14 A 487 MET ARG GLY LYS GLU GLY VAL ARG VAL PHE MET LEU SER SEQRES 15 A 487 PRO HIS LYS LYS MET SER ALA PHE GLN THR ALA GLN MET SEQRES 16 A 487 TYR SER LEU GLN ASP PRO ASN ILE PHE ASN LEU ALA VAL SEQRES 17 A 487 ASN GLY VAL PHE ASP ASP CYS GLN ASP ILE VAL LYS ALA SEQRES 18 A 487 VAL SER ASN ASP HIS ALA PHE LYS ALA GLN GLN LYS ILE SEQRES 19 A 487 GLY THR VAL ASN SER ILE ASN TRP ALA ARG VAL VAL ALA SEQRES 20 A 487 GLN VAL VAL TYR TYR PHE LYS GLY TYR PHE ALA ALA THR SEQRES 21 A 487 ARG SER ASN ASP GLU ARG VAL SER PHE THR VAL PRO SER SEQRES 22 A 487 GLY ASN PHE GLY ASN VAL CYS ALA GLY HIS ILE ALA ARG SEQRES 23 A 487 MET MET GLY LEU PRO ILE GLU LYS LEU VAL VAL ALA THR SEQRES 24 A 487 ASN GLU ASN ASP VAL LEU ASP GLU PHE PHE ARG THR GLY SEQRES 25 A 487 ALA TYR ARG VAL ARG SER ALA GLN ASP THR TYR HIS THR SEQRES 26 A 487 SER SER PRO SER MET ASP ILE SER LYS ALA SER ASN PHE SEQRES 27 A 487 GLU ARG PHE VAL PHE ASP LEU LEU GLY ARG ASP PRO ALA SEQRES 28 A 487 ARG VAL VAL GLN LEU PHE ARG ASP VAL GLU GLN LYS GLY SEQRES 29 A 487 GLY PHE ASP LEU ALA ALA SER GLY ASP PHE ALA ARG VAL SEQRES 30 A 487 ALA GLU PHE GLY PHE VAL SER GLY ARG SER THR HIS ALA SEQRES 31 A 487 ASP ARG ILE ALA THR ILE ARG ASP VAL PHE GLU ARG TYR SEQRES 32 A 487 ARG THR MET ILE ASP THR HIS THR ALA ASP GLY LEU LYS SEQRES 33 A 487 VAL ALA ARG GLU HIS LEU ARG PRO GLY VAL PRO MET VAL SEQRES 34 A 487 VAL LEU GLU THR ALA GLN PRO ILE LYS PHE GLY GLU SER SEQRES 35 A 487 ILE ARG GLU ALA LEU GLY GLN GLU PRO SER ARG PRO ALA SEQRES 36 A 487 ALA PHE ASP GLY LEU GLU ALA LEU PRO GLN ARG PHE GLU SEQRES 37 A 487 VAL VAL ASP ALA ASN ALA GLN GLN VAL LYS ASP PHE ILE SEQRES 38 A 487 ALA ALA HIS THR GLY ALA HET MLA A 484 7 HET EDO A 485 4 HET EDO A 486 4 HET BO3 A 487 4 HET EDO A 488 4 HET EDO A 489 4 HET EDO A 490 4 HET BO3 A 491 4 HETNAM MLA MALONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM BO3 BORIC ACID HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MLA C3 H4 O4 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 5 BO3 2(B H3 O3) FORMUL 10 HOH *479(H2 O) HELIX 1 1 THR A 16 LEU A 21 1 6 HELIX 2 2 SER A 41 ARG A 49 1 9 HELIX 3 3 PRO A 52 CYS A 65 1 14 HELIX 4 4 ALA A 69 TYR A 81 1 13 HELIX 5 5 ASN A 94 ILE A 98 5 5 HELIX 6 6 PHE A 125 LYS A 143 1 19 HELIX 7 7 GLY A 156 ARG A 167 1 12 HELIX 8 8 SER A 184 SER A 193 1 10 HELIX 9 9 VAL A 207 ASN A 220 1 14 HELIX 10 10 ASP A 221 GLN A 228 1 8 HELIX 11 11 ASN A 237 ALA A 255 1 19 HELIX 12 12 PRO A 268 GLY A 270 5 3 HELIX 13 13 ASN A 271 MET A 284 1 14 HELIX 14 14 ASN A 298 GLY A 308 1 11 HELIX 15 15 SER A 332 LEU A 342 1 11 HELIX 16 16 ASP A 345 GLY A 360 1 16 HELIX 17 17 PHE A 370 PHE A 376 1 7 HELIX 18 18 THR A 384 TYR A 399 1 16 HELIX 19 19 ASP A 404 ARG A 415 1 12 HELIX 20 20 GLN A 431 LYS A 434 5 4 HELIX 21 21 PHE A 435 GLY A 444 1 10 HELIX 22 22 PRO A 450 ASP A 454 5 5 HELIX 23 23 GLY A 455 LEU A 459 5 5 HELIX 24 24 ASN A 469 ALA A 479 1 11 SHEET 1 A 2 TYR A 3 SER A 5 0 SHEET 2 A 2 TYR A 32 PRO A 34 -1 O LEU A 33 N ILE A 4 SHEET 1 B 6 LEU A 101 GLU A 107 0 SHEET 2 B 6 ALA A 110 GLU A 116 -1 O LEU A 114 N THR A 102 SHEET 3 B 6 MET A 424 GLU A 428 1 O VAL A 426 N SER A 113 SHEET 4 B 6 VAL A 263 VAL A 267 1 N SER A 264 O VAL A 425 SHEET 5 B 6 ILE A 288 ALA A 294 1 O VAL A 292 N PHE A 265 SHEET 6 B 6 PHE A 378 GLY A 381 1 O VAL A 379 N VAL A 293 SHEET 1 C 5 ILE A 230 GLY A 231 0 SHEET 2 C 5 LEU A 148 ALA A 153 1 N LEU A 151 O GLY A 231 SHEET 3 C 5 VAL A 172 PRO A 179 1 O PHE A 175 N ILE A 150 SHEET 4 C 5 ILE A 199 ASN A 205 1 O VAL A 204 N SER A 178 SHEET 5 C 5 GLU A 464 ASP A 467 1 O VAL A 466 N ASN A 205 SHEET 1 D 2 ALA A 309 ARG A 311 0 SHEET 2 D 2 GLY A 361 ASP A 363 -1 O PHE A 362 N TYR A 310 SITE 1 AC1 9 LYS A 126 THR A 154 SER A 155 ASP A 157 SITE 2 AC1 9 THR A 158 BO3 A 487 HOH A 626 HOH A 648 SITE 3 AC1 9 HOH A 686 SITE 1 AC2 3 ALA A 71 ARG A 74 HOH A 740 SITE 1 AC3 4 ASN A 94 ARG A 173 ASN A 198 HOH A 538 SITE 1 AC4 7 LYS A 126 THR A 158 ASN A 234 SER A 235 SITE 2 AC4 7 ARG A 240 MLA A 484 HOH A 745 SITE 1 AC5 7 PRO A 34 SER A 35 GLU A 36 TYR A 37 SITE 2 AC5 7 PHE A 339 ASP A 340 ARG A 344 SITE 1 AC6 7 ALA A 83 ARG A 87 THR A 147 GLU A 170 SITE 2 AC6 7 GLY A 171 HOH A 538 HOH A 668 SITE 1 AC7 8 ARG A 282 MET A 283 ASN A 469 GLN A 471 SITE 2 AC7 8 GLN A 472 HOH A 569 HOH A 578 HOH A 690 SITE 1 AC8 6 THR A 50 LEU A 51 LYS A 250 ALA A 365 SITE 2 AC8 6 HOH A 616 HOH A 678 CRYST1 55.560 90.240 98.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010142 0.00000