HEADER LIGASE/LIGASE INHIBITOR 21-DEC-11 3V7R TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS BIOTIN PROTEIN LIGASE IN TITLE 2 COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 553596; SOURCE 4 STRAIN: A9781; SOURCE 5 GENE: SAOG_00031; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOTIN, METABOLISM, BIOTIN CARBOXYL CARRIER PROTEIN, LIGASE-LIGASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.Y.YAP,N.R.PENDINI REVDAT 3 08-NOV-23 3V7R 1 REMARK SEQADV REVDAT 2 17-JUL-13 3V7R 1 JRNL REVDAT 1 26-DEC-12 3V7R 0 JRNL AUTH T.P.SOARES DA COSTA,W.TIEU,M.Y.YAP,N.R.PENDINI,S.W.POLYAK, JRNL AUTH 2 D.SEJER PEDERSEN,R.MORONA,J.D.TURNIDGE,J.C.WALLACE, JRNL AUTH 3 M.C.WILCE,G.W.BOOKER,A.D.ABELL JRNL TITL SELECTIVE INHIBITION OF BIOTIN PROTEIN LIGASE FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 287 17823 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22437830 JRNL DOI 10.1074/JBC.M112.356576 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2700 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3642 ; 1.977 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 7.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;39.141 ;24.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;18.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2046 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1596 ; 1.107 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 2.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 3.224 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1070 ; 5.357 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3RKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 10% GLYCEROL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.30000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.34000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.30000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.34000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.34000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.34000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 94.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 272 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 662 O HOH A 737 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 320 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 128.67 -39.69 REMARK 500 HIS A 55 -20.81 84.98 REMARK 500 LYS A 118 42.09 -147.15 REMARK 500 ASN A 179 13.49 -147.47 REMARK 500 ASP A 184 -126.17 57.05 REMARK 500 LEU A 233 -2.52 -57.07 REMARK 500 ASN A 287 -117.19 54.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 32G A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CGH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN LIGASE FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 1HXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI BIOTIN REPRESSOR WITH BOUND BIOTIN REMARK 900 RELATED ID: 2EWN RELATED DB: PDB REMARK 900 ECOLI BIOTIN REPRESSOR WITH CO-REPRESSOR ANALOG REMARK 900 RELATED ID: 2EAY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN PROTEIN LIGASE FROM AQUIFEX AEOLICUS REMARK 900 RELATED ID: 3V7C RELATED DB: PDB REMARK 900 RELATED ID: 3V7S RELATED DB: PDB REMARK 900 RELATED ID: 3V8J RELATED DB: PDB REMARK 900 RELATED ID: 3V8K RELATED DB: PDB REMARK 900 RELATED ID: 3V8L RELATED DB: PDB DBREF 3V7R A 1 323 UNP C8N5A9 C8N5A9_STAAU 1 323 SEQADV 3V7R HIS A -5 UNP C8N5A9 EXPRESSION TAG SEQADV 3V7R HIS A -4 UNP C8N5A9 EXPRESSION TAG SEQADV 3V7R HIS A -3 UNP C8N5A9 EXPRESSION TAG SEQADV 3V7R HIS A -2 UNP C8N5A9 EXPRESSION TAG SEQADV 3V7R HIS A -1 UNP C8N5A9 EXPRESSION TAG SEQADV 3V7R HIS A 0 UNP C8N5A9 EXPRESSION TAG SEQRES 1 A 329 HIS HIS HIS HIS HIS HIS MET SER LYS TYR SER GLN ASP SEQRES 2 A 329 VAL LEU GLN LEU LEU TYR LYS ASN LYS PRO ASN TYR ILE SEQRES 3 A 329 SER GLY GLN SER ILE ALA GLU SER LEU ASN ILE SER ARG SEQRES 4 A 329 THR ALA VAL LYS LYS VAL ILE ASP GLN LEU LYS LEU GLU SEQRES 5 A 329 GLY CYS LYS ILE ASP SER VAL ASN HIS LYS GLY HIS LEU SEQRES 6 A 329 LEU GLN GLN LEU PRO ASP ILE TRP TYR GLN GLY ILE ILE SEQRES 7 A 329 ASP GLN TYR THR LYS SER SER ALA LEU PHE ASP PHE SER SEQRES 8 A 329 GLU VAL TYR ASP SER ILE ASP SER THR GLN LEU ALA ALA SEQRES 9 A 329 LYS LYS SER LEU VAL GLY ASN GLN SER SER PHE PHE ILE SEQRES 10 A 329 LEU SER ASP GLU GLN THR LYS GLY ARG GLY ARG PHE ASN SEQRES 11 A 329 ARG HIS TRP SER SER SER LYS GLY GLN GLY LEU TRP MET SEQRES 12 A 329 SER VAL VAL LEU ARG PRO ASN VAL ALA PHE SER MET ILE SEQRES 13 A 329 SER LYS PHE ASN LEU PHE ILE ALA LEU GLY ILE ARG ASP SEQRES 14 A 329 ALA ILE GLN HIS PHE SER GLN ASP GLU VAL LYS VAL LYS SEQRES 15 A 329 TRP PRO ASN ASP ILE TYR ILE ASP ASN GLY LYS VAL CYS SEQRES 16 A 329 GLY PHE LEU THR GLU MET VAL ALA ASN ASN ASP GLY ILE SEQRES 17 A 329 GLU ALA ILE ILE CYS GLY ILE GLY ILE ASN LEU THR GLN SEQRES 18 A 329 GLN LEU GLU ASN PHE ASP GLU SER ILE ARG HIS ARG ALA SEQRES 19 A 329 THR SER ILE GLN LEU HIS ASP LYS ASN LYS LEU ASP ARG SEQRES 20 A 329 TYR GLN PHE LEU GLU ARG LEU LEU GLN GLU ILE GLU LYS SEQRES 21 A 329 ARG TYR ASN GLN PHE LEU THR LEU PRO PHE SER GLU ILE SEQRES 22 A 329 ARG GLU GLU TYR ILE ALA ALA SER ASN ILE TRP ASN ARG SEQRES 23 A 329 THR LEU LEU PHE THR GLU ASN ASP LYS GLN PHE LYS GLY SEQRES 24 A 329 GLN ALA ILE ASP LEU ASP TYR ASP GLY TYR LEU ILE VAL SEQRES 25 A 329 ARG ASP GLU ALA GLY GLU SER HIS ARG LEU ILE SER ALA SEQRES 26 A 329 ASP ILE ASP PHE HET 32G A 500 33 HETNAM 32G (3AS,4S,6AR)-4-(5-{1-[4-(6-AMINO-9H-PURIN-9-YL)BUTYL]- HETNAM 2 32G 1H-1,2,3-TRIAZOL-4-YL}PENTYL)TETRAHYDRO-1H-THIENO[3,4- HETNAM 3 32G D]IMIDAZOL-2(3H)-ONE FORMUL 2 32G C21 H30 N10 O S FORMUL 3 HOH *146(H2 O) HELIX 1 1 TYR A 4 LYS A 16 1 13 HELIX 2 2 SER A 21 LEU A 29 1 9 HELIX 3 3 SER A 32 GLU A 46 1 15 HELIX 4 4 TYR A 68 SER A 78 1 11 HELIX 5 5 SER A 93 LEU A 102 1 10 HELIX 6 6 GLY A 121 ARG A 125 5 5 HELIX 7 7 ALA A 146 SER A 148 5 3 HELIX 8 8 MET A 149 HIS A 167 1 19 HELIX 9 9 GLN A 216 PHE A 220 5 5 HELIX 10 10 ILE A 224 ALA A 228 5 5 HELIX 11 11 ILE A 231 ASP A 235 5 5 HELIX 12 12 ASP A 240 LEU A 262 1 23 HELIX 13 13 PRO A 263 GLU A 266 5 4 HELIX 14 14 ILE A 267 SER A 275 1 9 SHEET 1 A 2 LYS A 49 VAL A 53 0 SHEET 2 A 2 GLY A 57 GLN A 62 -1 O GLN A 61 N LYS A 49 SHEET 1 B 7 PHE A 84 ILE A 91 0 SHEET 2 B 7 PHE A 109 GLN A 116 1 O ASP A 114 N TYR A 88 SHEET 3 B 7 GLY A 134 LEU A 141 -1 O VAL A 140 N PHE A 109 SHEET 4 B 7 GLY A 201 ASN A 212 -1 O ILE A 209 N MET A 137 SHEET 5 B 7 GLY A 186 ASN A 198 -1 N GLU A 194 O ILE A 206 SHEET 6 B 7 ASP A 180 ILE A 183 -1 N ILE A 183 O GLY A 186 SHEET 7 B 7 VAL A 173 LYS A 176 -1 N LYS A 176 O ASP A 180 SHEET 1 C 5 SER A 313 LEU A 316 0 SHEET 2 C 5 LEU A 304 ASP A 308 -1 N VAL A 306 O HIS A 314 SHEET 3 C 5 LYS A 289 LEU A 298 -1 N ILE A 296 O ILE A 305 SHEET 4 C 5 LEU A 282 GLU A 286 -1 N PHE A 284 O PHE A 291 SHEET 5 C 5 ASP A 320 ASP A 322 -1 O ASP A 322 N LEU A 283 CISPEP 1 LYS A 16 PRO A 17 0 3.79 CISPEP 2 TRP A 177 PRO A 178 0 -4.46 SITE 1 AC1 21 SER A 93 THR A 94 GLN A 95 GLN A 116 SITE 2 AC1 21 GLY A 119 ARG A 120 GLY A 121 ARG A 122 SITE 3 AC1 21 ARG A 125 HIS A 126 TRP A 127 SER A 128 SITE 4 AC1 21 MET A 137 ASP A 180 LYS A 187 GLY A 190 SITE 5 AC1 21 ILE A 209 GLY A 210 ASN A 212 ILE A 224 SITE 6 AC1 21 HOH A 628 CRYST1 94.600 94.600 130.680 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007652 0.00000