HEADER TRANSFERASE 23-DEC-11 3V8M TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEXE WITH 5'-AZIDO-8-BROMO-5'-DEOXYADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLY(P)/ATP NAD KINASE 1; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: PPNK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGAND-SCREENING BY CRYSTALLOGRAPHY, TWO-DOMAIN KINASE, INORGANIC KEYWDS 2 POLYPHOSPHATE/ATP-NAD KINASE 1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU,L.DUGU, AUTHOR 2 O.DUSSURGET,S.POCHET,G.LABESSE REVDAT 6 28-FEB-24 3V8M 1 REMARK REVDAT 5 24-JUN-20 3V8M 1 REMARK SEQADV REVDAT 4 08-NOV-17 3V8M 1 REMARK REVDAT 3 27-JUN-12 3V8M 1 JRNL REVDAT 2 06-JUN-12 3V8M 1 JRNL REVDAT 1 14-MAR-12 3V8M 0 JRNL AUTH M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU, JRNL AUTH 2 L.DUGUE,O.DUSSURGET,S.POCHET,G.LABESSE JRNL TITL SCREENING AND IN SITU SYNTHESIS USING CRYSTALS OF A NAD JRNL TITL 2 KINASE LEAD TO A POTENT ANTISTAPHYLOCOCCAL COMPOUND. JRNL REF STRUCTURE V. 20 1107 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22608967 JRNL DOI 10.1016/J.STR.2012.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 10105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.870 REMARK 3 FREE R VALUE TEST SET COUNT : 289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.2891 - 3.9365 0.96 4498 135 0.1772 0.1920 REMARK 3 2 3.9365 - 3.1246 0.90 4194 105 0.1908 0.2484 REMARK 3 3 3.1246 - 2.7296 0.98 4541 157 0.2291 0.2670 REMARK 3 4 2.7296 - 2.4800 0.99 4605 131 0.2948 0.3485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 57.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53260 REMARK 3 B22 (A**2) : 10.76750 REMARK 3 B33 (A**2) : -11.30010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2184 REMARK 3 ANGLE : 0.854 2965 REMARK 3 CHIRALITY : 0.058 323 REMARK 3 PLANARITY : 0.003 375 REMARK 3 DIHEDRAL : 13.932 794 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:100) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2817 24.5448 22.4287 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.2992 REMARK 3 T33: 0.0748 T12: 0.0989 REMARK 3 T13: 0.0498 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 2.0653 L22: 0.7578 REMARK 3 L33: 0.2739 L12: -0.2369 REMARK 3 L13: -0.3661 L23: -0.1211 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.6343 S13: -0.0835 REMARK 3 S21: 0.2149 S22: 0.0160 S23: 0.0686 REMARK 3 S31: -0.1750 S32: -0.0596 S33: -0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 101:264) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0350 13.9004 -1.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0836 REMARK 3 T33: 0.0551 T12: 0.0559 REMARK 3 T13: 0.0119 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.5732 L22: 0.4103 REMARK 3 L33: 1.7648 L12: -0.0722 REMARK 3 L13: -0.3964 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.0596 S13: 0.0193 REMARK 3 S21: 0.0704 S22: 0.0069 S23: 0.0283 REMARK 3 S31: -0.0374 S32: -0.2256 S33: -0.0558 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 401:472) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7558 17.4551 5.9518 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0447 REMARK 3 T33: 0.0297 T12: 0.0890 REMARK 3 T13: 0.0186 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5732 L22: 0.2761 REMARK 3 L33: 0.0593 L12: -0.2555 REMARK 3 L13: -0.0758 L23: 0.0644 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: 0.1424 S13: -0.0817 REMARK 3 S21: -0.1679 S22: -0.0940 S23: -0.0717 REMARK 3 S31: -0.0034 S32: 0.0284 S33: 0.0695 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 303:303) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6801 24.7817 15.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.6228 REMARK 3 T33: 0.3497 T12: 0.2830 REMARK 3 T13: -0.0549 T23: -0.1424 REMARK 3 L TENSOR REMARK 3 L11: 7.1959 L22: 1.7993 REMARK 3 L33: 3.4171 L12: 0.4663 REMARK 3 L13: -0.8195 L23: 1.6082 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.4119 S13: 0.3686 REMARK 3 S21: -0.0263 S22: 0.0438 S23: 0.0906 REMARK 3 S31: 0.1398 S32: 0.1015 S33: 0.0192 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 301:302) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1095 8.9791 10.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.4266 T22: 0.3568 REMARK 3 T33: 0.1955 T12: -0.0364 REMARK 3 T13: 0.0004 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.1922 L22: 3.7941 REMARK 3 L33: 0.1461 L12: 0.5756 REMARK 3 L13: -0.3195 L23: 0.5916 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.7387 S13: 0.0342 REMARK 3 S21: 0.5958 S22: -0.2612 S23: 0.0615 REMARK 3 S31: 0.5554 S32: 0.2715 S33: 0.2446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : ASYMMETRIC LAUE 001 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 55.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM SODIUM BROMIDE, 220 MM POTASSIUM REMARK 280 CITRATE, PH 4.8-5.1, GLYCEROL 6%, 15-16% W/V POLYETHYLENE GLYCOL REMARK 280 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.26400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.82700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.12050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.26400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.82700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.12050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.26400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.82700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.12050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.26400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.82700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.12050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.52800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.52800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 GLY A 110 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 ASP A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ALA A 91 CB REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -64.61 -104.50 REMARK 500 ASP A 141 -3.35 73.43 REMARK 500 ALA A 162 -125.15 -97.27 REMARK 500 ALA A 185 70.49 46.28 REMARK 500 ASN A 189 -155.16 -134.15 REMARK 500 HIS A 204 -12.20 79.88 REMARK 500 ASP A 222 -118.13 56.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 456 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 7.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z8B A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z8B A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I2C RELATED DB: PDB REMARK 900 RELATED ID: 3V7V RELATED DB: PDB REMARK 900 RELATED ID: 3V7W RELATED DB: PDB REMARK 900 RELATED ID: 3V7Y RELATED DB: PDB REMARK 900 RELATED ID: 3V80 RELATED DB: PDB REMARK 900 RELATED ID: 3V8N RELATED DB: PDB REMARK 900 RELATED ID: 3V8P RELATED DB: PDB REMARK 900 RELATED ID: 3V8Q RELATED DB: PDB REMARK 900 RELATED ID: 3V8R RELATED DB: PDB DBREF 3V8M A 1 264 UNP Q8Y8D7 PPNK1_LISMO 1 264 SEQADV 3V8M LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8M HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET Z8B A 301 22 HET Z8B A 302 22 HET CIT A 303 13 HETNAM Z8B 5'-AZIDO-8-BROMO-5'-DEOXYADENOSINE HETNAM CIT CITRIC ACID FORMUL 2 Z8B 2(C10 H11 BR N8 O3) FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *72(H2 O) HELIX 1 1 ASP A 10 GLY A 25 1 16 HELIX 2 2 GLY A 44 TYR A 55 1 12 HELIX 3 3 GLU A 56 ILE A 62 5 7 HELIX 4 4 ARG A 79 ALA A 81 5 3 HELIX 5 5 GLU A 82 ALA A 91 1 10 HELIX 6 6 PRO A 157 THR A 161 5 5 HELIX 7 7 ALA A 162 LEU A 167 1 6 HELIX 8 8 PRO A 252 ILE A 262 1 11 SHEET 1 A 4 GLU A 30 TYR A 31 0 SHEET 2 A 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 A 4 ILE A 38 GLY A 43 1 O ILE A 40 N MET A 4 SHEET 4 A 4 ALA A 63 HIS A 68 1 O ILE A 65 N SER A 41 SHEET 1 B 6 ALA A 116 ALA A 120 0 SHEET 2 B 6 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116 SHEET 3 B 6 GLU A 233 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 B 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 B 6 PHE A 133 ILE A 139 -1 N ASP A 136 O GLN A 210 SHEET 6 B 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 C 6 LEU A 199 PRO A 202 0 SHEET 2 C 6 ALA A 178 MET A 184 -1 N LEU A 181 O LEU A 199 SHEET 3 C 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 C 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 C 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 6 C 6 LEU A 224 HIS A 228 -1 O HIS A 228 N PHE A 217 SITE 1 AC1 11 ASP A 45 HIS A 71 PHE A 74 TYR A 75 SITE 2 AC1 11 ASN A 122 ARG A 148 SER A 158 THR A 161 SITE 3 AC1 11 ALA A 162 ILE A 187 Z8B A 302 SITE 1 AC2 10 LEU A 49 ASN A 122 GLU A 123 ASP A 150 SITE 2 AC2 10 ALA A 162 TYR A 163 SER A 166 ALA A 185 SITE 3 AC2 10 ILE A 187 Z8B A 301 SITE 1 AC3 10 VAL A 98 TYR A 100 HIS A 173 ARG A 247 SITE 2 AC3 10 PHE A 251 PRO A 252 PHE A 253 ARG A 256 SITE 3 AC3 10 HOH A 421 HOH A 424 CRYST1 62.528 75.654 118.241 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008457 0.00000