HEADER TRANSFERASE 23-DEC-11 3V8N TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEX WITH 8-BROMO-5'-AMINO-5'-DEOXYADENOSINE, REACTED WITH A TITLE 3 CITRATE MOLECULE IN N SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLY(P)/ATP NAD KINASE 1; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: PPNK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGAND-SCREENING BY CRYSTALLOGRAPHY, TWO-DOMAIN KINASE, INORGANIC KEYWDS 2 POLYPHOSPHATE/ATP-NAD KINASE 1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU,L.DUGU, AUTHOR 2 O.DUSSURGET,S.POCHET,G.LABESSE REVDAT 6 28-FEB-24 3V8N 1 REMARK REVDAT 5 24-JUN-20 3V8N 1 REMARK SEQADV REVDAT 4 08-NOV-17 3V8N 1 REMARK REVDAT 3 27-JUN-12 3V8N 1 JRNL REVDAT 2 06-JUN-12 3V8N 1 JRNL REVDAT 1 14-MAR-12 3V8N 0 JRNL AUTH M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU, JRNL AUTH 2 L.DUGUE,O.DUSSURGET,S.POCHET,G.LABESSE JRNL TITL SCREENING AND IN SITU SYNTHESIS USING CRYSTALS OF A NAD JRNL TITL 2 KINASE LEAD TO A POTENT ANTISTAPHYLOCOCCAL COMPOUND. JRNL REF STRUCTURE V. 20 1107 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22608967 JRNL DOI 10.1016/J.STR.2012.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 11540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.920 REMARK 3 FREE R VALUE TEST SET COUNT : 338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9877 - 4.0686 1.00 4293 129 0.1957 0.2103 REMARK 3 2 4.0686 - 3.2299 0.88 3821 86 0.1891 0.1907 REMARK 3 3 3.2299 - 2.8218 1.00 4263 150 0.2152 0.2980 REMARK 3 4 2.8218 - 2.5638 1.00 4301 133 0.2329 0.3005 REMARK 3 5 2.5638 - 2.3801 1.00 4303 134 0.2689 0.3859 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 66.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93810 REMARK 3 B22 (A**2) : 10.47810 REMARK 3 B33 (A**2) : -11.41620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2182 REMARK 3 ANGLE : 1.047 2965 REMARK 3 CHIRALITY : 0.152 322 REMARK 3 PLANARITY : 0.003 379 REMARK 3 DIHEDRAL : 13.181 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:100) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6225 24.8451 22.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.5008 REMARK 3 T33: 0.2072 T12: 0.1269 REMARK 3 T13: 0.0556 T23: -0.1080 REMARK 3 L TENSOR REMARK 3 L11: 1.2700 L22: 1.0738 REMARK 3 L33: 0.3821 L12: -0.5545 REMARK 3 L13: -0.6221 L23: 0.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: -0.4545 S13: 0.0202 REMARK 3 S21: 0.1515 S22: 0.1304 S23: 0.0663 REMARK 3 S31: -0.1031 S32: -0.1295 S33: 0.0333 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 101:264) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8363 13.6491 -1.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.2067 REMARK 3 T33: 0.0897 T12: 0.0608 REMARK 3 T13: 0.0317 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.0005 L22: 1.0829 REMARK 3 L33: 2.9389 L12: 0.0485 REMARK 3 L13: 0.0269 L23: 0.2149 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: -0.0443 S13: 0.0673 REMARK 3 S21: 0.0966 S22: -0.1131 S23: 0.1600 REMARK 3 S31: -0.0928 S32: -0.2809 S33: 0.0216 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 401:481) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8798 15.2678 7.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.3632 REMARK 3 T33: 0.2621 T12: 0.0354 REMARK 3 T13: 0.0345 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.1296 L22: 0.2704 REMARK 3 L33: 0.2572 L12: -0.2118 REMARK 3 L13: -0.1888 L23: 0.2796 REMARK 3 S TENSOR REMARK 3 S11: -0.1515 S12: 0.0488 S13: 0.0131 REMARK 3 S21: -0.1029 S22: 0.0018 S23: 0.1002 REMARK 3 S31: 0.0393 S32: -0.2805 S33: 0.0985 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 303:303) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1610 24.8552 15.1456 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.5138 REMARK 3 T33: 0.3953 T12: 0.1721 REMARK 3 T13: -0.0669 T23: -0.2229 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 1.3720 REMARK 3 L33: 0.3813 L12: 0.0431 REMARK 3 L13: 0.0078 L23: 0.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.0492 S13: 0.0960 REMARK 3 S21: -0.0893 S22: -0.0819 S23: 0.0715 REMARK 3 S31: 0.0469 S32: -0.0369 S33: 0.0750 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 301:302) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6450 9.3293 11.6875 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.5401 REMARK 3 T33: 0.3310 T12: 0.0004 REMARK 3 T13: -0.0310 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 8.7226 L22: 1.7511 REMARK 3 L33: 4.6694 L12: 0.9921 REMARK 3 L13: -5.5882 L23: -1.9715 REMARK 3 S TENSOR REMARK 3 S11: -0.3698 S12: -0.5036 S13: 0.3822 REMARK 3 S21: 0.3339 S22: -0.2797 S23: 0.5279 REMARK 3 S31: 0.9005 S32: -0.0546 S33: 0.3771 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : ASYMMETRIC LAUE 001 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 64.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM SODIUM BROMIDE, 220 MM POTASSIUM REMARK 280 CITRATE, PH 4.8-5.1, GLYCEROL 6%, 15-16% W/V POLYETHYLENE GLYCOL REMARK 280 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.53150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.98300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.50600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.53150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.98300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.50600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.53150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.98300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.50600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.53150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.98300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.50600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.06300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 63.06300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 TYR A 192 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 94 39.92 -90.56 REMARK 500 TYR A 95 151.28 -46.58 REMARK 500 TYR A 109 -161.82 -119.26 REMARK 500 ASN A 122 -68.51 -103.48 REMARK 500 SER A 129 34.71 -79.21 REMARK 500 SER A 129 -107.90 -63.93 REMARK 500 ALA A 162 -126.60 -95.52 REMARK 500 VAL A 212 -64.23 -99.39 REMARK 500 ASP A 222 -114.96 61.61 REMARK 500 GLU A 263 135.02 175.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5NB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5CI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I2C RELATED DB: PDB REMARK 900 RELATED ID: 3V7V RELATED DB: PDB REMARK 900 RELATED ID: 3V7W RELATED DB: PDB REMARK 900 RELATED ID: 3V7Y RELATED DB: PDB REMARK 900 RELATED ID: 3V80 RELATED DB: PDB REMARK 900 RELATED ID: 3V8M RELATED DB: PDB REMARK 900 RELATED ID: 3V8P RELATED DB: PDB REMARK 900 RELATED ID: 3V8Q RELATED DB: PDB REMARK 900 RELATED ID: 3V8R RELATED DB: PDB DBREF 3V8N A 1 264 UNP Q8Y8D7 PPNK1_LISMO 1 264 SEQADV 3V8N LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8N HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET 5NB A 301 20 HET 5CI A 302 32 HET CIT A 303 13 HETNAM 5NB 5'-AMINO-8-BROMO-5'-DEOXYADENOSINE HETNAM 5CI 8-BROMO-5'-{[3-CARBOXY-2-(CARBOXYMETHYL)-2- HETNAM 2 5CI HYDROXYPROPANOYL]AMINO}-5'-DEOXYADENOSINE HETNAM CIT CITRIC ACID FORMUL 2 5NB C10 H13 BR N6 O3 FORMUL 3 5CI C16 H19 BR N6 O9 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *81(H2 O) HELIX 1 1 ASP A 10 GLY A 25 1 16 HELIX 2 2 GLY A 44 TYR A 55 1 12 HELIX 3 3 ARG A 58 ILE A 62 5 5 HELIX 4 4 ARG A 79 ALA A 81 5 3 HELIX 5 5 GLU A 82 GLY A 93 1 12 HELIX 6 6 PRO A 157 THR A 161 5 5 HELIX 7 7 ALA A 162 LEU A 167 1 6 HELIX 8 8 PRO A 252 ILE A 262 1 11 SHEET 1 A 3 TYR A 3 SER A 7 0 SHEET 2 A 3 ILE A 38 GLY A 43 1 O ILE A 40 N MET A 4 SHEET 3 A 3 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 B 8 ALA A 116 ALA A 120 0 SHEET 2 B 8 GLN A 96 TYR A 109 -1 N VAL A 107 O ALA A 116 SHEET 3 B 8 VAL A 231 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 B 8 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 B 8 PHE A 133 ILE A 139 -1 N ASP A 136 O GLN A 210 SHEET 6 B 8 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 7 B 8 MET A 179 SER A 186 -1 O GLN A 180 N SER A 155 SHEET 8 B 8 LEU A 199 PHE A 201 -1 O PHE A 201 N MET A 179 SHEET 1 C 9 ALA A 116 ALA A 120 0 SHEET 2 C 9 GLN A 96 TYR A 109 -1 N VAL A 107 O ALA A 116 SHEET 3 C 9 VAL A 231 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 C 9 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 C 9 PHE A 133 ILE A 139 -1 N ASP A 136 O GLN A 210 SHEET 6 C 9 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 7 C 9 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 8 C 9 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 9 C 9 LEU A 224 HIS A 228 -1 O ILE A 226 N ILE A 219 SITE 1 AC1 11 ASP A 45 GLY A 46 LEU A 49 PHE A 74 SITE 2 AC1 11 TYR A 75 ASN A 122 SER A 158 THR A 161 SITE 3 AC1 11 ALA A 162 5CI A 302 HOH A 432 SITE 1 AC2 13 GLY A 46 LEU A 49 ASN A 122 GLU A 123 SITE 2 AC2 13 ASP A 150 ALA A 162 TYR A 163 SER A 166 SITE 3 AC2 13 ALA A 185 5NB A 301 HOH A 422 HOH A 429 SITE 4 AC2 13 HOH A 432 SITE 1 AC3 9 VAL A 98 TYR A 100 HIS A 173 ARG A 247 SITE 2 AC3 9 PHE A 251 PRO A 252 PHE A 253 ARG A 256 SITE 3 AC3 9 HOH A 425 CRYST1 63.063 75.966 119.012 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008403 0.00000