HEADER TRANSFERASE 23-DEC-11 3V8R TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 H223E MUTANT FROM LISTERIA TITLE 2 MONOCYTOGENES IN COMPLEX WITH 5'-AMINO-8-BROMO-5'-DEOXYADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLY(P)/ATP NAD KINASE 1; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: PPNK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGAND-SCREENING BY CRYSTALLOGRAPHY, TWO-DOMAIN KINASE, INORGANIC KEYWDS 2 POLYPHOSPHATE/ATP-NAD KINASE 1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU,L.DUGU, AUTHOR 2 O.DUSSURGET,S.POCHET,G.LABESSE REVDAT 6 28-FEB-24 3V8R 1 REMARK REVDAT 5 24-JUN-20 3V8R 1 REMARK SEQADV REVDAT 4 08-NOV-17 3V8R 1 REMARK REVDAT 3 27-JUN-12 3V8R 1 JRNL REVDAT 2 06-JUN-12 3V8R 1 JRNL REVDAT 1 14-MAR-12 3V8R 0 JRNL AUTH M.GELIN,G.PONCET-MONTANGE,L.ASSAIRI,L.MORELLATO,V.HUTEAU, JRNL AUTH 2 L.DUGUE,O.DUSSURGET,S.POCHET,G.LABESSE JRNL TITL SCREENING AND IN SITU SYNTHESIS USING CRYSTALS OF A NAD JRNL TITL 2 KINASE LEAD TO A POTENT ANTISTAPHYLOCOCCAL COMPOUND. JRNL REF STRUCTURE V. 20 1107 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22608967 JRNL DOI 10.1016/J.STR.2012.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 11196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.4334 - 3.7936 0.94 2730 126 0.1741 0.2190 REMARK 3 2 3.7936 - 3.0111 0.90 2471 143 0.1728 0.2850 REMARK 3 3 3.0111 - 2.6305 0.99 2721 149 0.2216 0.2722 REMARK 3 4 2.6305 - 2.3900 0.99 2721 135 0.2744 0.3610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 62.52 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.97920 REMARK 3 B22 (A**2) : 6.24200 REMARK 3 B33 (A**2) : -0.26270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2177 REMARK 3 ANGLE : 0.777 2949 REMARK 3 CHIRALITY : 0.050 319 REMARK 3 PLANARITY : 0.003 371 REMARK 3 DIHEDRAL : 15.237 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:100) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5825 25.0735 22.5495 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.4459 REMARK 3 T33: 0.0236 T12: 0.0933 REMARK 3 T13: 0.0475 T23: -0.1144 REMARK 3 L TENSOR REMARK 3 L11: 1.0335 L22: 0.4525 REMARK 3 L33: 0.1989 L12: -0.3553 REMARK 3 L13: -0.3431 L23: 0.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.6546 S13: 0.0210 REMARK 3 S21: 0.1341 S22: 0.1074 S23: 0.0471 REMARK 3 S31: 0.0242 S32: -0.0201 S33: 0.0714 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 101:264) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0939 13.9160 -1.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.2861 REMARK 3 T33: 0.0176 T12: 0.0350 REMARK 3 T13: 0.0140 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.7614 L22: 0.4780 REMARK 3 L33: 0.3786 L12: 0.0996 REMARK 3 L13: -0.4448 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0515 S13: 0.0370 REMARK 3 S21: 0.0041 S22: 0.0018 S23: 0.0441 REMARK 3 S31: 0.0312 S32: -0.1893 S33: -0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 401:500) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5492 17.0228 6.9839 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1699 REMARK 3 T33: 0.0511 T12: 0.0375 REMARK 3 T13: 0.0063 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: -0.0006 L22: 0.0329 REMARK 3 L33: 0.4679 L12: -0.0097 REMARK 3 L13: -0.0499 L23: 0.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: 0.0467 S13: -0.0046 REMARK 3 S21: 0.0521 S22: 0.0159 S23: 0.0620 REMARK 3 S31: 0.0888 S32: -0.0680 S33: 0.0036 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 303:303) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7822 24.9734 14.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.3875 T22: 0.3426 REMARK 3 T33: 0.1512 T12: 0.0093 REMARK 3 T13: 0.0732 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.6059 L22: 9.3393 REMARK 3 L33: 2.0855 L12: -1.0577 REMARK 3 L13: -0.3389 L23: 4.3953 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.1128 S13: 0.0319 REMARK 3 S21: -0.0090 S22: -0.0127 S23: 0.0357 REMARK 3 S31: 0.1105 S32: 0.0132 S33: -0.0442 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 301:302) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3020 9.3357 10.7217 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.4875 REMARK 3 T33: 0.2372 T12: -0.0278 REMARK 3 T13: 0.0214 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 6.3126 L22: 7.0906 REMARK 3 L33: 9.0661 L12: -2.8912 REMARK 3 L13: -4.6025 L23: -3.5905 REMARK 3 S TENSOR REMARK 3 S11: -0.2823 S12: -1.0337 S13: -0.2596 REMARK 3 S21: 0.8248 S22: 0.0389 S23: 0.2586 REMARK 3 S31: -0.4264 S32: 1.2427 S33: 0.2226 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : ASYMMETRIC LAUE 001 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 59.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM SODIUM BROMIDE, 220 MM POTASSIUM REMARK 280 CITRATE, PH 4.8-5.1, GLYCEROL 6%, 15-16% W/V POLYETHYLENE GLYCOL REMARK 280 400 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.35900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.56750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.17900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.35900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.56750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.17900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.35900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.56750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.17900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.35900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.56750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.17900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.71800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.71800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 190 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 20.79 -143.95 REMARK 500 TYR A 95 151.25 -48.02 REMARK 500 ASN A 122 -74.89 -100.95 REMARK 500 SER A 129 46.31 -85.64 REMARK 500 ASP A 141 -6.17 83.04 REMARK 500 ALA A 162 -127.63 -97.09 REMARK 500 ALA A 185 58.06 37.90 REMARK 500 HIS A 204 -22.04 84.72 REMARK 500 ASN A 213 -84.77 -129.44 REMARK 500 ASP A 222 -119.06 52.51 REMARK 500 GLU A 263 139.52 -177.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 499 DISTANCE = 5.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5NB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5NB A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I2C RELATED DB: PDB REMARK 900 RELATED ID: 3V7V RELATED DB: PDB REMARK 900 RELATED ID: 3V7W RELATED DB: PDB REMARK 900 RELATED ID: 3V7Y RELATED DB: PDB REMARK 900 RELATED ID: 3V80 RELATED DB: PDB REMARK 900 RELATED ID: 3V8M RELATED DB: PDB REMARK 900 RELATED ID: 3V8N RELATED DB: PDB REMARK 900 RELATED ID: 3V8P RELATED DB: PDB REMARK 900 RELATED ID: 3V8Q RELATED DB: PDB DBREF 3V8R A 1 264 UNP Q8Y8D7 PPNK1_LISMO 1 264 SEQADV 3V8R GLU A 223 UNP Q8Y8D7 HIS 223 ENGINEERED MUTATION SEQADV 3V8R LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 3V8R HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP GLU LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET 5NB A 301 20 HET 5NB A 302 20 HET CIT A 303 13 HETNAM 5NB 5'-AMINO-8-BROMO-5'-DEOXYADENOSINE HETNAM CIT CITRIC ACID FORMUL 2 5NB 2(C10 H13 BR N6 O3) FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *100(H2 O) HELIX 1 1 ASP A 10 GLY A 25 1 16 HELIX 2 2 GLY A 44 TYR A 55 1 12 HELIX 3 3 GLU A 56 ILE A 62 5 7 HELIX 4 4 ARG A 79 ALA A 81 5 3 HELIX 5 5 GLU A 82 GLY A 93 1 12 HELIX 6 6 PRO A 157 THR A 161 5 5 HELIX 7 7 ALA A 162 LEU A 167 1 6 HELIX 8 8 PRO A 252 ILE A 262 1 11 SHEET 1 A 3 TYR A 3 SER A 7 0 SHEET 2 A 3 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 3 A 3 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 B 6 ALA A 116 ALA A 120 0 SHEET 2 B 6 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116 SHEET 3 B 6 GLU A 233 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 B 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 B 6 PHE A 133 ILE A 139 -1 N ASP A 136 O GLN A 210 SHEET 6 B 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 C 6 LEU A 199 PRO A 202 0 SHEET 2 C 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 C 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 C 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 C 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 6 C 6 LEU A 224 HIS A 228 -1 O LEU A 224 N VAL A 221 SITE 1 AC1 8 ASP A 45 LEU A 49 PHE A 74 ASN A 122 SITE 2 AC1 8 SER A 158 THR A 161 ALA A 162 HOH A 440 SITE 1 AC2 9 ASN A 122 GLU A 123 ASP A 150 ALA A 162 SITE 2 AC2 9 TYR A 163 SER A 166 ALA A 185 ILE A 187 SITE 3 AC2 9 HOH A 440 SITE 1 AC3 12 TYR A 100 HIS A 173 ARG A 247 PHE A 251 SITE 2 AC3 12 PRO A 252 PHE A 253 ARG A 256 HOH A 417 SITE 3 AC3 12 HOH A 431 HOH A 444 HOH A 456 HOH A 466 CRYST1 62.718 77.135 118.358 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008449 0.00000