HEADER DNA 26-DEC-11 3V9D TITLE CRYSTAL STRUCTURE OF THE TETRA-DECANUCLEOTIDE D(CCCCGGTACCGGGG)2 AS AN TITLE 2 A-DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*GP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS TETRA-DECANUCLEOTIDE, A-DNA DUPLEX, CRYSTAL PACKING, A-TYPE DOUBLE KEYWDS 2 HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.K.MANDAL,S.VENKADESH,N.GAUTHAM REVDAT 4 03-APR-24 3V9D 1 REMARK REVDAT 3 20-MAR-24 3V9D 1 REMARK REVDAT 2 12-MAR-14 3V9D 1 JRNL REVDAT 1 18-APR-12 3V9D 0 JRNL AUTH P.K.MANDAL,S.VENKADESH,N.GAUTHAM JRNL TITL STRUCTURE OF THE TETRADECANUCLEOTIDE D(CCCCGGTACCGGGG)2 AS JRNL TITL 2 AN A-DNA DUPLEX JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 393 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22505405 JRNL DOI 10.1107/S174430911200869X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 2449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.4680 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.4860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 636 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 978 ; 3.216 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 110 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 294 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 636 ; 2.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 978 ; 3.427 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT WAS CARRIED OUT REMARK 3 USING AMORE [NAVAZA, 1994] OF THE CCP4 SUITE. THE A-DNA DUPLEX REMARK 3 GAVE THE BEST CORRELATION COEFFICIENT (83%) REMARK 4 REMARK 4 3V9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2599 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.640 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.69 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : 0.27200 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: A-DNA DUPLEX FIBER MODEL (TETRA-DECANUCLEOTIDE) REMARK 200 BUILT USING INSIGHT-II REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM DNA, 50MM SODIUM CACODYLATE REMARK 280 TRIHYDRATE BUFFER (PH 7.0), 12MM MNCL2, 10MM SPERMINE, REMARK 280 EQUILIBRATED AGAINST 50 % METHYL PENTANE DIOL (MPD), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.84350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.92175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.76525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 2 O3' DC A 2 C3' -0.044 REMARK 500 DC A 4 O3' DC A 4 C3' -0.055 REMARK 500 DG A 5 O3' DG A 5 C3' -0.059 REMARK 500 DG A 6 O3' DG A 6 C3' -0.056 REMARK 500 DT A 7 O3' DT A 7 C3' -0.041 REMARK 500 DC B 3 O3' DC B 3 C3' -0.041 REMARK 500 DC B 4 O3' DC B 4 C3' -0.038 REMARK 500 DG B 6 O3' DG B 6 C3' -0.053 REMARK 500 DG B 11 O3' DG B 11 C3' -0.037 REMARK 500 DG B 11 C5 DG B 11 N7 -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DC A 1 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC A 4 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG A 5 C4' - C3' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DG A 5 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT A 7 O4' - C4' - C3' ANGL. DEV. = -4.5 DEGREES REMARK 500 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 9 N1 - C2 - O2 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC A 10 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 10 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC A 10 C6 - N1 - C2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DC A 10 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG A 11 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DG A 11 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 DG A 11 N3 - C2 - N2 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG A 12 O4' - C4' - C3' ANGL. DEV. = -7.2 DEGREES REMARK 500 DG A 12 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 12 C4 - C5 - N7 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 12 C5 - N7 - C8 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG A 12 C6 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG A 13 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG A 13 C4 - C5 - N7 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 13 C5 - N7 - C8 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG A 13 N3 - C2 - N2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG A 14 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG A 14 C4' - C3' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 DG A 14 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG A 14 N7 - C8 - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC B 1 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC B 1 C4' - C3' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC B 2 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC B 3 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC B 4 O5' - P - OP1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC B 4 P - O5' - C5' ANGL. DEV. = -11.1 DEGREES REMARK 500 DC B 4 O4' - C4' - C3' ANGL. DEV. = -4.4 DEGREES REMARK 500 DC B 4 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG B 5 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 5 O4' - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 DG B 5 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 5 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG B 6 O4' - C4' - C3' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT B 7 O4' - C4' - C3' ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 75 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QK4 RELATED DB: PDB REMARK 900 THE SEQUENCE CRYSTALLIZES AS AN A-DNA DUPLEX AND REPRESENTS MORE REMARK 900 THAN ONE FULL TURN OF THE A-HELIX. DBREF 3V9D A 1 14 PDB 3V9D 3V9D 1 14 DBREF 3V9D B 1 14 PDB 3V9D 3V9D 1 14 SEQRES 1 A 14 DC DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 2 A 14 DG SEQRES 1 B 14 DC DC DC DC DG DG DT DA DC DC DG DG DG SEQRES 2 B 14 DG HET MN B 101 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN MN 2+ FORMUL 4 HOH *15(H2 O) LINK MN MN B 101 O HOH B 208 1555 1555 2.43 SITE 1 AC1 2 DG B 13 HOH B 208 CRYST1 29.340 29.340 87.687 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.034083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011404 0.00000