data_3V9O # _entry.id 3V9O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3V9O pdb_00003v9o 10.2210/pdb3v9o/pdb RCSB RCSB069770 ? ? WWPDB D_1000069770 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ButhA.17925.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3V9O _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Combining functional and structural genomics to sample the essential Burkholderia structome.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e53851 _citation.page_last e53851 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23382856 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0053851 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baugh, L.' 1 ? primary 'Gallagher, L.A.' 2 ? primary 'Patrapuvich, R.' 3 ? primary 'Clifton, M.C.' 4 ? primary 'Gardberg, A.S.' 5 ? primary 'Edwards, T.E.' 6 ? primary 'Armour, B.' 7 ? primary 'Begley, D.W.' 8 ? primary 'Dieterich, S.H.' 9 ? primary 'Dranow, D.M.' 10 ? primary 'Abendroth, J.' 11 ? primary 'Fairman, J.W.' 12 ? primary 'Fox, D.' 13 ? primary 'Staker, B.L.' 14 ? primary 'Phan, I.' 15 ? primary 'Gillespie, A.' 16 ? primary 'Choi, R.' 17 ? primary 'Nakazawa-Hewitt, S.' 18 ? primary 'Nguyen, M.T.' 19 ? primary 'Napuli, A.' 20 ? primary 'Barrett, L.' 21 ? primary 'Buchko, G.W.' 22 ? primary 'Stacy, R.' 23 ? primary 'Myler, P.J.' 24 ? primary 'Stewart, L.J.' 25 ? primary 'Manoil, C.' 26 ? primary 'Van Voorhis, W.C.' 27 ? # _cell.length_a 73.984 _cell.length_b 73.984 _cell.length_c 110.976 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3V9O _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.entry_id 3V9O _symmetry.Int_Tables_number 97 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydroneopterin aldolase' 16010.332 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 non-polymer syn GUANINE 151.126 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMTGTTMFAALLHPRLADCRRLYLRNHEVYMNIGAFEHEKRGEQRVVINVDLFVPLALTTPVEDKLREVVDYDLMKQ SVAQCVARGHIHLQETLCDAIAASLLAHDAVRAVRVSTEKPDAYPDCDAVGVEVFRIKDEERA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMTGTTMFAALLHPRLADCRRLYLRNHEVYMNIGAFEHEKRGEQRVVINVDLFVPLALTTPVEDKLREVVDYDLMKQ SVAQCVARGHIHLQETLCDAIAASLLAHDAVRAVRVSTEKPDAYPDCDAVGVEVFRIKDEERA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ButhA.17925.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 THR n 1 7 GLY n 1 8 THR n 1 9 THR n 1 10 MET n 1 11 PHE n 1 12 ALA n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 HIS n 1 17 PRO n 1 18 ARG n 1 19 LEU n 1 20 ALA n 1 21 ASP n 1 22 CYS n 1 23 ARG n 1 24 ARG n 1 25 LEU n 1 26 TYR n 1 27 LEU n 1 28 ARG n 1 29 ASN n 1 30 HIS n 1 31 GLU n 1 32 VAL n 1 33 TYR n 1 34 MET n 1 35 ASN n 1 36 ILE n 1 37 GLY n 1 38 ALA n 1 39 PHE n 1 40 GLU n 1 41 HIS n 1 42 GLU n 1 43 LYS n 1 44 ARG n 1 45 GLY n 1 46 GLU n 1 47 GLN n 1 48 ARG n 1 49 VAL n 1 50 VAL n 1 51 ILE n 1 52 ASN n 1 53 VAL n 1 54 ASP n 1 55 LEU n 1 56 PHE n 1 57 VAL n 1 58 PRO n 1 59 LEU n 1 60 ALA n 1 61 LEU n 1 62 THR n 1 63 THR n 1 64 PRO n 1 65 VAL n 1 66 GLU n 1 67 ASP n 1 68 LYS n 1 69 LEU n 1 70 ARG n 1 71 GLU n 1 72 VAL n 1 73 VAL n 1 74 ASP n 1 75 TYR n 1 76 ASP n 1 77 LEU n 1 78 MET n 1 79 LYS n 1 80 GLN n 1 81 SER n 1 82 VAL n 1 83 ALA n 1 84 GLN n 1 85 CYS n 1 86 VAL n 1 87 ALA n 1 88 ARG n 1 89 GLY n 1 90 HIS n 1 91 ILE n 1 92 HIS n 1 93 LEU n 1 94 GLN n 1 95 GLU n 1 96 THR n 1 97 LEU n 1 98 CYS n 1 99 ASP n 1 100 ALA n 1 101 ILE n 1 102 ALA n 1 103 ALA n 1 104 SER n 1 105 LEU n 1 106 LEU n 1 107 ALA n 1 108 HIS n 1 109 ASP n 1 110 ALA n 1 111 VAL n 1 112 ARG n 1 113 ALA n 1 114 VAL n 1 115 ARG n 1 116 VAL n 1 117 SER n 1 118 THR n 1 119 GLU n 1 120 LYS n 1 121 PRO n 1 122 ASP n 1 123 ALA n 1 124 TYR n 1 125 PRO n 1 126 ASP n 1 127 CYS n 1 128 ASP n 1 129 ALA n 1 130 VAL n 1 131 GLY n 1 132 VAL n 1 133 GLU n 1 134 VAL n 1 135 PHE n 1 136 ARG n 1 137 ILE n 1 138 LYS n 1 139 ASP n 1 140 GLU n 1 141 GLU n 1 142 ARG n 1 143 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BTH_I0291 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'E264 / ATCC 700388 / DSM 13276 / CIP 106301' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia thailandensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271848 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2T1V0_BURTA _struct_ref.pdbx_db_accession Q2T1V0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTGTTMFAALLHPRLADCRRLYLRNHEVYMNIGAFEHEKRGEQRVVINVDLFVPLALTTPVEDKLREVVDYDLMKQSVAQ CVARGHIHLQETLCDAIAASLLAHDAVRAVRVSTEKPDAYPDCDAVGVEVFRIKDEERA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3V9O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2T1V0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 139 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 139 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3V9O GLY A 1 ? UNP Q2T1V0 ? ? 'expression tag' -3 1 1 3V9O PRO A 2 ? UNP Q2T1V0 ? ? 'expression tag' -2 2 1 3V9O GLY A 3 ? UNP Q2T1V0 ? ? 'expression tag' -1 3 1 3V9O SER A 4 ? UNP Q2T1V0 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3V9O _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;2 M ammonium sulfate, 0.2 M lithium sulfate, 0.1 M TRIS, SSGCID: ButhA.17925.a.A1 PW33456, VAPOR DIFFUSION, SITTING DROP, temperature 289K, pH 7.0 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97740 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97740 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 3V9O _reflns.d_resolution_high 1.450 _reflns.d_resolution_low 50.000 _reflns.number_obs 27570 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 13.500 _reflns.pdbx_chi_squared 1.016 _reflns.pdbx_redundancy 14.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.450 1.480 ? ? ? 0.559 ? ? 1.010 14.400 ? 1351 100.000 1 1 1.480 1.500 ? ? ? 0.459 ? ? 1.026 14.300 ? 1350 100.000 2 1 1.500 1.530 ? ? ? 0.408 ? ? 1.023 14.400 ? 1353 100.000 3 1 1.530 1.560 ? ? ? 0.334 ? ? 1.016 14.400 ? 1363 100.000 4 1 1.560 1.600 ? ? ? 0.272 ? ? 1.006 14.400 ? 1360 100.000 5 1 1.600 1.630 ? ? ? 0.238 ? ? 1.011 14.400 ? 1357 100.000 6 1 1.630 1.670 ? ? ? 0.208 ? ? 1.026 14.500 ? 1340 100.000 7 1 1.670 1.720 ? ? ? 0.170 ? ? 1.011 14.400 ? 1382 100.000 8 1 1.720 1.770 ? ? ? 0.147 ? ? 1.000 14.500 ? 1388 100.000 9 1 1.770 1.830 ? ? ? 0.118 ? ? 0.954 14.500 ? 1335 100.000 10 1 1.830 1.890 ? ? ? 0.100 ? ? 0.975 14.400 ? 1361 100.000 11 1 1.890 1.970 ? ? ? 0.089 ? ? 0.968 14.400 ? 1372 100.000 12 1 1.970 2.060 ? ? ? 0.077 ? ? 0.979 14.400 ? 1386 100.000 13 1 2.060 2.170 ? ? ? 0.075 ? ? 1.003 14.400 ? 1371 100.000 14 1 2.170 2.300 ? ? ? 0.078 ? ? 1.008 14.000 ? 1382 100.000 15 1 2.300 2.480 ? ? ? 0.076 ? ? 1.077 13.200 ? 1392 100.000 16 1 2.480 2.730 ? ? ? 0.072 ? ? 1.052 12.900 ? 1394 100.000 17 1 2.730 3.120 ? ? ? 0.064 ? ? 0.987 13.400 ? 1404 100.000 18 1 3.120 3.940 ? ? ? 0.045 ? ? 1.057 13.700 ? 1428 99.900 19 1 3.940 50.000 ? ? ? 0.042 ? ? 1.145 13.300 ? 1501 98.900 20 1 # _refine.entry_id 3V9O _refine.ls_d_res_high 1.4510 _refine.ls_d_res_low 38.0640 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9100 _refine.ls_number_reflns_obs 27569 _refine.ls_number_reflns_all 28959 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all 0.2044 _refine.ls_R_factor_obs 0.1752 _refine.ls_R_factor_R_work 0.1736 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2044 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_number_reflns_R_free 1390 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.1951 _refine.solvent_model_param_bsol 40.9680 _refine.solvent_model_param_ksol 0.3880 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.3429 _refine.aniso_B[2][2] -1.3429 _refine.aniso_B[3][3] 2.6857 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.2400 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'pdb entry 3O1K' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8883 _refine.B_iso_max 100.000 _refine.B_iso_min 11.160 _refine.pdbx_overall_phase_error 17.5100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 945 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1075 _refine_hist.d_res_high 1.4510 _refine_hist.d_res_low 38.0640 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1039 0.019 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1411 1.812 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 165 0.104 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 181 0.010 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 396 13.669 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.4514 1.5033 10 100.0000 2567 . 0.2380 0.2548 . 130 . 2697 . . 'X-RAY DIFFRACTION' 1.5033 1.5634 10 100.0000 2586 . 0.2096 0.2234 . 131 . 2717 . . 'X-RAY DIFFRACTION' 1.5634 1.6346 10 100.0000 2585 . 0.1834 0.1898 . 131 . 2716 . . 'X-RAY DIFFRACTION' 1.6346 1.7208 10 100.0000 2572 . 0.1708 0.2087 . 154 . 2726 . . 'X-RAY DIFFRACTION' 1.7208 1.8286 10 100.0000 2596 . 0.1604 0.2108 . 127 . 2723 . . 'X-RAY DIFFRACTION' 1.8286 1.9698 10 100.0000 2591 . 0.1654 0.1956 . 142 . 2733 . . 'X-RAY DIFFRACTION' 1.9698 2.1680 10 100.0000 2593 . 0.1639 0.1944 . 164 . 2757 . . 'X-RAY DIFFRACTION' 2.1680 2.4816 10 100.0000 2625 . 0.1664 0.1936 . 149 . 2774 . . 'X-RAY DIFFRACTION' 2.4816 3.1264 10 100.0000 2656 . 0.1788 0.2153 . 139 . 2795 . . 'X-RAY DIFFRACTION' 3.1264 38.0775 10 99.0000 2808 . 0.1722 0.2042 . 123 . 2931 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3V9O _struct.title 'Crystal structure of Dihydroneopterin aldolase (BTH_I0291) from Burkholderia thailendensis bound to guanine.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3V9O _struct_keywords.pdbx_keywords LYASE _struct_keywords.text ;Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, Dihydroneopterin aldolase, Lyase, Dihydroneopterin ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 60 ? THR A 62 ? ALA A 56 THR A 58 5 ? 3 HELX_P HELX_P2 2 LYS A 68 ? VAL A 72 ? LYS A 64 VAL A 68 5 ? 5 HELX_P HELX_P3 3 ASP A 76 ? ARG A 88 ? ASP A 72 ARG A 84 1 ? 13 HELX_P HELX_P4 4 LEU A 93 ? ALA A 107 ? LEU A 89 ALA A 103 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 22 ? MET A 34 ? CYS A 18 MET A 30 A 2 GLN A 47 ? PRO A 58 ? GLN A 43 PRO A 54 A 3 ALA A 113 ? LYS A 120 ? ALA A 109 LYS A 116 A 4 VAL A 130 ? ILE A 137 ? VAL A 126 ILE A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 34 ? N MET A 30 O GLN A 47 ? O GLN A 43 A 2 3 N PHE A 56 ? N PHE A 52 O ALA A 113 ? O ALA A 109 A 3 4 N LYS A 120 ? N LYS A 116 O VAL A 130 ? O VAL A 126 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 140 ? 4 'BINDING SITE FOR RESIDUE EDO A 140' AC2 Software A EDO 141 ? 4 'BINDING SITE FOR RESIDUE EDO A 141' AC3 Software A EDO 142 ? 3 'BINDING SITE FOR RESIDUE EDO A 142' AC4 Software A EDO 143 ? 3 'BINDING SITE FOR RESIDUE EDO A 143' AC5 Software A EDO 144 ? 5 'BINDING SITE FOR RESIDUE EDO A 144' AC6 Software A GUN 145 ? 10 'BINDING SITE FOR RESIDUE GUN A 145' AC7 Software A SO4 146 ? 4 'BINDING SITE FOR RESIDUE SO4 A 146' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 58 ? PRO A 54 . ? 1_555 ? 2 AC1 4 ASP A 109 ? ASP A 105 . ? 1_555 ? 3 AC1 4 VAL A 111 ? VAL A 107 . ? 1_555 ? 4 AC1 4 ARG A 112 ? ARG A 108 . ? 1_555 ? 5 AC2 4 GLU A 46 ? GLU A 42 . ? 1_555 ? 6 AC2 4 LYS A 79 ? LYS A 75 . ? 8_555 ? 7 AC2 4 PRO A 125 ? PRO A 121 . ? 5_655 ? 8 AC2 4 ASP A 126 ? ASP A 122 . ? 5_655 ? 9 AC3 3 ALA A 100 ? ALA A 96 . ? 1_555 ? 10 AC3 3 HOH I . ? HOH A 151 . ? 1_555 ? 11 AC3 3 HOH I . ? HOH A 174 . ? 1_555 ? 12 AC4 3 ASN A 29 ? ASN A 25 . ? 1_555 ? 13 AC4 3 ARG A 48 ? ARG A 44 . ? 1_555 ? 14 AC4 3 HOH I . ? HOH A 163 . ? 1_555 ? 15 AC5 5 CYS A 85 ? CYS A 81 . ? 1_555 ? 16 AC5 5 ARG A 88 ? ARG A 84 . ? 1_555 ? 17 AC5 5 ILE A 91 ? ILE A 87 . ? 1_555 ? 18 AC5 5 ALA A 100 ? ALA A 96 . ? 1_555 ? 19 AC5 5 HOH I . ? HOH A 192 . ? 1_555 ? 20 AC6 10 LEU A 69 ? LEU A 65 . ? 4_655 ? 21 AC6 10 VAL A 72 ? VAL A 68 . ? 4_655 ? 22 AC6 10 VAL A 73 ? VAL A 69 . ? 4_655 ? 23 AC6 10 ASP A 74 ? ASP A 70 . ? 4_655 ? 24 AC6 10 TYR A 75 ? TYR A 71 . ? 4_655 ? 25 AC6 10 LEU A 93 ? LEU A 89 . ? 1_555 ? 26 AC6 10 GLN A 94 ? GLN A 90 . ? 1_555 ? 27 AC6 10 GLU A 95 ? GLU A 91 . ? 1_555 ? 28 AC6 10 HOH I . ? HOH A 153 . ? 1_555 ? 29 AC6 10 HOH I . ? HOH A 214 . ? 4_655 ? 30 AC7 4 ASN A 35 ? ASN A 31 . ? 1_555 ? 31 AC7 4 GLY A 89 ? GLY A 85 . ? 1_555 ? 32 AC7 4 HIS A 90 ? HIS A 86 . ? 1_555 ? 33 AC7 4 HOH I . ? HOH A 176 . ? 1_555 ? # _atom_sites.entry_id 3V9O _atom_sites.fract_transf_matrix[1][1] 0.013516 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013516 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 THR 6 2 ? ? ? A . n A 1 7 GLY 7 3 ? ? ? A . n A 1 8 THR 8 4 ? ? ? A . n A 1 9 THR 9 5 ? ? ? A . n A 1 10 MET 10 6 ? ? ? A . n A 1 11 PHE 11 7 ? ? ? A . n A 1 12 ALA 12 8 ? ? ? A . n A 1 13 ALA 13 9 9 ALA ALA A . n A 1 14 LEU 14 10 10 LEU LEU A . n A 1 15 LEU 15 11 11 LEU LEU A . n A 1 16 HIS 16 12 12 HIS HIS A . n A 1 17 PRO 17 13 13 PRO PRO A . n A 1 18 ARG 18 14 14 ARG ARG A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 ASP 21 17 17 ASP ASP A . n A 1 22 CYS 22 18 18 CYS CYS A . n A 1 23 ARG 23 19 19 ARG ARG A . n A 1 24 ARG 24 20 20 ARG ARG A . n A 1 25 LEU 25 21 21 LEU LEU A . n A 1 26 TYR 26 22 22 TYR TYR A . n A 1 27 LEU 27 23 23 LEU LEU A . n A 1 28 ARG 28 24 24 ARG ARG A . n A 1 29 ASN 29 25 25 ASN ASN A . n A 1 30 HIS 30 26 26 HIS HIS A . n A 1 31 GLU 31 27 27 GLU GLU A . n A 1 32 VAL 32 28 28 VAL VAL A . n A 1 33 TYR 33 29 29 TYR TYR A . n A 1 34 MET 34 30 30 MET MET A . n A 1 35 ASN 35 31 31 ASN ASN A . n A 1 36 ILE 36 32 32 ILE ILE A . n A 1 37 GLY 37 33 33 GLY GLY A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 PHE 39 35 ? ? ? A . n A 1 40 GLU 40 36 ? ? ? A . n A 1 41 HIS 41 37 ? ? ? A . n A 1 42 GLU 42 38 ? ? ? A . n A 1 43 LYS 43 39 ? ? ? A . n A 1 44 ARG 44 40 ? ? ? A . n A 1 45 GLY 45 41 41 GLY GLY A . n A 1 46 GLU 46 42 42 GLU GLU A . n A 1 47 GLN 47 43 43 GLN GLN A . n A 1 48 ARG 48 44 44 ARG ARG A . n A 1 49 VAL 49 45 45 VAL VAL A . n A 1 50 VAL 50 46 46 VAL VAL A . n A 1 51 ILE 51 47 47 ILE ILE A . n A 1 52 ASN 52 48 48 ASN ASN A . n A 1 53 VAL 53 49 49 VAL VAL A . n A 1 54 ASP 54 50 50 ASP ASP A . n A 1 55 LEU 55 51 51 LEU LEU A . n A 1 56 PHE 56 52 52 PHE PHE A . n A 1 57 VAL 57 53 53 VAL VAL A . n A 1 58 PRO 58 54 54 PRO PRO A . n A 1 59 LEU 59 55 55 LEU LEU A . n A 1 60 ALA 60 56 56 ALA ALA A . n A 1 61 LEU 61 57 57 LEU LEU A . n A 1 62 THR 62 58 58 THR THR A . n A 1 63 THR 63 59 59 THR THR A . n A 1 64 PRO 64 60 60 PRO PRO A . n A 1 65 VAL 65 61 61 VAL VAL A . n A 1 66 GLU 66 62 62 GLU GLU A . n A 1 67 ASP 67 63 63 ASP ASP A . n A 1 68 LYS 68 64 64 LYS LYS A . n A 1 69 LEU 69 65 65 LEU LEU A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 GLU 71 67 67 GLU GLU A . n A 1 72 VAL 72 68 68 VAL VAL A . n A 1 73 VAL 73 69 69 VAL VAL A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 TYR 75 71 71 TYR TYR A . n A 1 76 ASP 76 72 72 ASP ASP A . n A 1 77 LEU 77 73 73 LEU LEU A . n A 1 78 MET 78 74 74 MET MET A . n A 1 79 LYS 79 75 75 LYS LYS A . n A 1 80 GLN 80 76 76 GLN GLN A . n A 1 81 SER 81 77 77 SER SER A . n A 1 82 VAL 82 78 78 VAL VAL A . n A 1 83 ALA 83 79 79 ALA ALA A . n A 1 84 GLN 84 80 80 GLN GLN A . n A 1 85 CYS 85 81 81 CYS CYS A . n A 1 86 VAL 86 82 82 VAL VAL A . n A 1 87 ALA 87 83 83 ALA ALA A . n A 1 88 ARG 88 84 84 ARG ARG A . n A 1 89 GLY 89 85 85 GLY GLY A . n A 1 90 HIS 90 86 86 HIS HIS A . n A 1 91 ILE 91 87 87 ILE ILE A . n A 1 92 HIS 92 88 88 HIS HIS A . n A 1 93 LEU 93 89 89 LEU LEU A . n A 1 94 GLN 94 90 90 GLN GLN A . n A 1 95 GLU 95 91 91 GLU GLU A . n A 1 96 THR 96 92 92 THR THR A . n A 1 97 LEU 97 93 93 LEU LEU A . n A 1 98 CYS 98 94 94 CYS CYS A . n A 1 99 ASP 99 95 95 ASP ASP A . n A 1 100 ALA 100 96 96 ALA ALA A . n A 1 101 ILE 101 97 97 ILE ILE A . n A 1 102 ALA 102 98 98 ALA ALA A . n A 1 103 ALA 103 99 99 ALA ALA A . n A 1 104 SER 104 100 100 SER SER A . n A 1 105 LEU 105 101 101 LEU LEU A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 ALA 107 103 103 ALA ALA A . n A 1 108 HIS 108 104 104 HIS HIS A . n A 1 109 ASP 109 105 105 ASP ASP A . n A 1 110 ALA 110 106 106 ALA ALA A . n A 1 111 VAL 111 107 107 VAL VAL A . n A 1 112 ARG 112 108 108 ARG ARG A . n A 1 113 ALA 113 109 109 ALA ALA A . n A 1 114 VAL 114 110 110 VAL VAL A . n A 1 115 ARG 115 111 111 ARG ARG A . n A 1 116 VAL 116 112 112 VAL VAL A . n A 1 117 SER 117 113 113 SER SER A . n A 1 118 THR 118 114 114 THR THR A . n A 1 119 GLU 119 115 115 GLU GLU A . n A 1 120 LYS 120 116 116 LYS LYS A . n A 1 121 PRO 121 117 117 PRO PRO A . n A 1 122 ASP 122 118 118 ASP ASP A . n A 1 123 ALA 123 119 119 ALA ALA A . n A 1 124 TYR 124 120 120 TYR TYR A . n A 1 125 PRO 125 121 121 PRO PRO A . n A 1 126 ASP 126 122 122 ASP ASP A . n A 1 127 CYS 127 123 123 CYS CYS A . n A 1 128 ASP 128 124 124 ASP ASP A . n A 1 129 ALA 129 125 125 ALA ALA A . n A 1 130 VAL 130 126 126 VAL VAL A . n A 1 131 GLY 131 127 127 GLY GLY A . n A 1 132 VAL 132 128 128 VAL VAL A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 VAL 134 130 130 VAL VAL A . n A 1 135 PHE 135 131 131 PHE PHE A . n A 1 136 ARG 136 132 132 ARG ARG A . n A 1 137 ILE 137 133 133 ILE ILE A . n A 1 138 LYS 138 134 134 LYS LYS A . n A 1 139 ASP 139 135 135 ASP ASP A . n A 1 140 GLU 140 136 ? ? ? A . n A 1 141 GLU 141 137 ? ? ? A . n A 1 142 ARG 142 138 ? ? ? A . n A 1 143 ALA 143 139 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 140 1 EDO EDO A . C 2 EDO 1 141 2 EDO EDO A . D 2 EDO 1 142 3 EDO EDO A . E 2 EDO 1 143 4 EDO EDO A . F 2 EDO 1 144 5 EDO EDO A . G 3 GUN 1 145 1 GUN GUN A . H 4 SO4 1 146 1 SO4 SO4 A . I 5 HOH 1 147 1 HOH HOH A . I 5 HOH 2 148 2 HOH HOH A . I 5 HOH 3 149 3 HOH HOH A . I 5 HOH 4 150 4 HOH HOH A . I 5 HOH 5 151 5 HOH HOH A . I 5 HOH 6 152 6 HOH HOH A . I 5 HOH 7 153 7 HOH HOH A . I 5 HOH 8 154 8 HOH HOH A . I 5 HOH 9 155 9 HOH HOH A . I 5 HOH 10 156 10 HOH HOH A . I 5 HOH 11 157 11 HOH HOH A . I 5 HOH 12 158 12 HOH HOH A . I 5 HOH 13 159 13 HOH HOH A . I 5 HOH 14 160 14 HOH HOH A . I 5 HOH 15 161 15 HOH HOH A . I 5 HOH 16 162 16 HOH HOH A . I 5 HOH 17 163 17 HOH HOH A . I 5 HOH 18 164 18 HOH HOH A . I 5 HOH 19 165 19 HOH HOH A . I 5 HOH 20 166 20 HOH HOH A . I 5 HOH 21 167 21 HOH HOH A . I 5 HOH 22 168 22 HOH HOH A . I 5 HOH 23 169 23 HOH HOH A . I 5 HOH 24 170 24 HOH HOH A . I 5 HOH 25 171 25 HOH HOH A . I 5 HOH 26 172 26 HOH HOH A . I 5 HOH 27 173 27 HOH HOH A . I 5 HOH 28 174 28 HOH HOH A . I 5 HOH 29 175 29 HOH HOH A . I 5 HOH 30 176 30 HOH HOH A . I 5 HOH 31 177 31 HOH HOH A . I 5 HOH 32 178 32 HOH HOH A . I 5 HOH 33 179 33 HOH HOH A . I 5 HOH 34 180 34 HOH HOH A . I 5 HOH 35 181 35 HOH HOH A . I 5 HOH 36 182 36 HOH HOH A . I 5 HOH 37 183 37 HOH HOH A . I 5 HOH 38 184 38 HOH HOH A . I 5 HOH 39 185 39 HOH HOH A . I 5 HOH 40 186 40 HOH HOH A . I 5 HOH 41 187 41 HOH HOH A . I 5 HOH 42 188 42 HOH HOH A . I 5 HOH 43 189 43 HOH HOH A . I 5 HOH 44 190 44 HOH HOH A . I 5 HOH 45 191 45 HOH HOH A . I 5 HOH 46 192 46 HOH HOH A . I 5 HOH 47 193 47 HOH HOH A . I 5 HOH 48 194 48 HOH HOH A . I 5 HOH 49 195 49 HOH HOH A . I 5 HOH 50 196 50 HOH HOH A . I 5 HOH 51 197 51 HOH HOH A . I 5 HOH 52 198 52 HOH HOH A . I 5 HOH 53 199 53 HOH HOH A . I 5 HOH 54 200 54 HOH HOH A . I 5 HOH 55 201 55 HOH HOH A . I 5 HOH 56 202 56 HOH HOH A . I 5 HOH 57 203 57 HOH HOH A . I 5 HOH 58 204 58 HOH HOH A . I 5 HOH 59 205 59 HOH HOH A . I 5 HOH 60 206 60 HOH HOH A . I 5 HOH 61 207 61 HOH HOH A . I 5 HOH 62 208 62 HOH HOH A . I 5 HOH 63 209 63 HOH HOH A . I 5 HOH 64 210 64 HOH HOH A . I 5 HOH 65 211 65 HOH HOH A . I 5 HOH 66 212 66 HOH HOH A . I 5 HOH 67 213 67 HOH HOH A . I 5 HOH 68 214 68 HOH HOH A . I 5 HOH 69 215 69 HOH HOH A . I 5 HOH 70 216 70 HOH HOH A . I 5 HOH 71 217 71 HOH HOH A . I 5 HOH 72 218 72 HOH HOH A . I 5 HOH 73 219 73 HOH HOH A . I 5 HOH 74 220 74 HOH HOH A . I 5 HOH 75 221 75 HOH HOH A . I 5 HOH 76 222 76 HOH HOH A . I 5 HOH 77 223 77 HOH HOH A . I 5 HOH 78 224 78 HOH HOH A . I 5 HOH 79 225 79 HOH HOH A . I 5 HOH 80 226 80 HOH HOH A . I 5 HOH 81 227 81 HOH HOH A . I 5 HOH 82 228 82 HOH HOH A . I 5 HOH 83 229 83 HOH HOH A . I 5 HOH 84 230 84 HOH HOH A . I 5 HOH 85 231 85 HOH HOH A . I 5 HOH 86 232 86 HOH HOH A . I 5 HOH 87 233 87 HOH HOH A . I 5 HOH 88 234 88 HOH HOH A . I 5 HOH 89 235 89 HOH HOH A . I 5 HOH 90 236 90 HOH HOH A . I 5 HOH 91 237 91 HOH HOH A . I 5 HOH 92 238 92 HOH HOH A . I 5 HOH 93 239 93 HOH HOH A . I 5 HOH 94 240 94 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 15500 ? 1 MORE 7 ? 1 'SSA (A^2)' 19750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1.0000000000 0.0000000000 0.0000000000 73.9840000000 0.0000000000 -1.0000000000 0.0000000000 -73.9840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -y,x-1,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -73.9840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_655 y+1,-x,z 0.0000000000 1.0000000000 0.0000000000 73.9840000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 232 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2013-10-30 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 27.8882 -36.9194 31.7120 1.2959 0.5895 0.5394 0.1322 -0.2213 0.0495 8.2839 1.8379 7.5330 2.6737 -2.6560 1.6949 -0.0624 0.2701 -0.1552 -1.5725 0.1063 -0.7351 1.7297 -0.6539 0.2299 'X-RAY DIFFRACTION' 2 ? refined 24.4878 -29.5292 14.7117 0.0934 0.1481 0.0689 -0.0089 -0.0172 -0.0290 2.8300 6.5733 4.1466 1.6890 -1.8790 -4.0678 0.0181 -0.1663 0.1472 -0.0438 -0.0235 -0.1417 0.1632 -0.1695 0.1884 'X-RAY DIFFRACTION' 3 ? refined 17.7808 -32.7930 17.0526 0.1185 0.1171 0.1122 0.0298 0.0333 -0.0167 3.4590 2.7113 2.4012 1.1479 -1.0305 -1.1641 0.0612 0.0686 -0.1094 -0.0332 0.0079 0.3465 0.1948 -0.1154 -0.1958 'X-RAY DIFFRACTION' 4 ? refined 16.8776 -23.6065 14.1401 0.1449 0.2059 0.1776 0.0219 -0.0004 0.0099 3.3579 4.2348 7.3601 0.1280 0.0616 -5.5738 -0.1353 0.5009 -0.4273 -0.0480 0.1764 0.6222 0.0013 -0.0294 -0.3629 'X-RAY DIFFRACTION' 5 ? refined 18.9067 -11.2685 12.3367 0.4906 0.3674 0.6301 -0.0051 -0.1373 0.1479 7.3486 7.1343 1.9479 1.4254 0.5482 -3.1644 0.0297 -0.6114 0.5027 -0.6140 -0.0302 -1.6183 1.2950 -0.6443 0.5166 'X-RAY DIFFRACTION' 6 ? refined 28.5596 -21.9132 17.0647 0.1415 0.1114 0.0842 0.0093 -0.0032 -0.0196 5.3220 0.8575 2.5059 0.9503 -3.1448 -0.4851 0.0163 -0.0374 0.0293 -0.0237 0.0787 0.0721 0.0714 -0.0276 -0.0513 'X-RAY DIFFRACTION' 7 ? refined 24.4168 -25.5455 30.5617 0.2888 0.3645 0.1202 -0.0491 0.0341 -0.0609 6.4531 6.3210 2.1628 -3.7100 -1.3887 0.5995 -0.0371 0.0438 0.0459 -1.0905 0.1140 0.0719 1.1284 0.2331 -0.0586 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 10 A 14 '(chain A and resid 10:14)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 15 A 33 '(chain A and resid 15:33)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 34 A 72 '(chain A and resid 34:72)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 73 A 82 '(chain A and resid 73:82)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 83 A 86 '(chain A and resid 83:86)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 87 A 131 '(chain A and resid 87:131)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 132 A 136 '(chain A and resid 132:136)' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.7.3_928 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH1 A ARG 19 ? ? 123.37 120.30 3.07 0.50 N 2 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH1 A ARG 111 ? ? 123.35 120.30 3.05 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 58 ? ? -143.65 31.96 2 1 ALA A 103 ? ? -84.56 48.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 135 ? CG ? A ASP 139 CG 2 1 Y 1 A ASP 135 ? OD1 ? A ASP 139 OD1 3 1 Y 1 A ASP 135 ? OD2 ? A ASP 139 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A MET 1 ? A MET 5 6 1 Y 1 A THR 2 ? A THR 6 7 1 Y 1 A GLY 3 ? A GLY 7 8 1 Y 1 A THR 4 ? A THR 8 9 1 Y 1 A THR 5 ? A THR 9 10 1 Y 1 A MET 6 ? A MET 10 11 1 Y 1 A PHE 7 ? A PHE 11 12 1 Y 1 A ALA 8 ? A ALA 12 13 1 Y 1 A PHE 35 ? A PHE 39 14 1 Y 1 A GLU 36 ? A GLU 40 15 1 Y 1 A HIS 37 ? A HIS 41 16 1 Y 1 A GLU 38 ? A GLU 42 17 1 Y 1 A LYS 39 ? A LYS 43 18 1 Y 1 A ARG 40 ? A ARG 44 19 1 Y 1 A GLU 136 ? A GLU 140 20 1 Y 1 A GLU 137 ? A GLU 141 21 1 Y 1 A ARG 138 ? A ARG 142 22 1 Y 1 A ALA 139 ? A ALA 143 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 GUN N9 N Y N 147 GUN C8 C Y N 148 GUN N7 N Y N 149 GUN C5 C Y N 150 GUN C6 C N N 151 GUN O6 O N N 152 GUN N1 N N N 153 GUN C2 C N N 154 GUN N2 N N N 155 GUN N3 N N N 156 GUN C4 C Y N 157 GUN HN9 H N N 158 GUN H8 H N N 159 GUN HN1 H N N 160 GUN HN21 H N N 161 GUN HN22 H N N 162 HIS N N N N 163 HIS CA C N S 164 HIS C C N N 165 HIS O O N N 166 HIS CB C N N 167 HIS CG C Y N 168 HIS ND1 N Y N 169 HIS CD2 C Y N 170 HIS CE1 C Y N 171 HIS NE2 N Y N 172 HIS OXT O N N 173 HIS H H N N 174 HIS H2 H N N 175 HIS HA H N N 176 HIS HB2 H N N 177 HIS HB3 H N N 178 HIS HD1 H N N 179 HIS HD2 H N N 180 HIS HE1 H N N 181 HIS HE2 H N N 182 HIS HXT H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 ILE N N N N 187 ILE CA C N S 188 ILE C C N N 189 ILE O O N N 190 ILE CB C N S 191 ILE CG1 C N N 192 ILE CG2 C N N 193 ILE CD1 C N N 194 ILE OXT O N N 195 ILE H H N N 196 ILE H2 H N N 197 ILE HA H N N 198 ILE HB H N N 199 ILE HG12 H N N 200 ILE HG13 H N N 201 ILE HG21 H N N 202 ILE HG22 H N N 203 ILE HG23 H N N 204 ILE HD11 H N N 205 ILE HD12 H N N 206 ILE HD13 H N N 207 ILE HXT H N N 208 LEU N N N N 209 LEU CA C N S 210 LEU C C N N 211 LEU O O N N 212 LEU CB C N N 213 LEU CG C N N 214 LEU CD1 C N N 215 LEU CD2 C N N 216 LEU OXT O N N 217 LEU H H N N 218 LEU H2 H N N 219 LEU HA H N N 220 LEU HB2 H N N 221 LEU HB3 H N N 222 LEU HG H N N 223 LEU HD11 H N N 224 LEU HD12 H N N 225 LEU HD13 H N N 226 LEU HD21 H N N 227 LEU HD22 H N N 228 LEU HD23 H N N 229 LEU HXT H N N 230 LYS N N N N 231 LYS CA C N S 232 LYS C C N N 233 LYS O O N N 234 LYS CB C N N 235 LYS CG C N N 236 LYS CD C N N 237 LYS CE C N N 238 LYS NZ N N N 239 LYS OXT O N N 240 LYS H H N N 241 LYS H2 H N N 242 LYS HA H N N 243 LYS HB2 H N N 244 LYS HB3 H N N 245 LYS HG2 H N N 246 LYS HG3 H N N 247 LYS HD2 H N N 248 LYS HD3 H N N 249 LYS HE2 H N N 250 LYS HE3 H N N 251 LYS HZ1 H N N 252 LYS HZ2 H N N 253 LYS HZ3 H N N 254 LYS HXT H N N 255 MET N N N N 256 MET CA C N S 257 MET C C N N 258 MET O O N N 259 MET CB C N N 260 MET CG C N N 261 MET SD S N N 262 MET CE C N N 263 MET OXT O N N 264 MET H H N N 265 MET H2 H N N 266 MET HA H N N 267 MET HB2 H N N 268 MET HB3 H N N 269 MET HG2 H N N 270 MET HG3 H N N 271 MET HE1 H N N 272 MET HE2 H N N 273 MET HE3 H N N 274 MET HXT H N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 SO4 S S N N 330 SO4 O1 O N N 331 SO4 O2 O N N 332 SO4 O3 O N N 333 SO4 O4 O N N 334 THR N N N N 335 THR CA C N S 336 THR C C N N 337 THR O O N N 338 THR CB C N R 339 THR OG1 O N N 340 THR CG2 C N N 341 THR OXT O N N 342 THR H H N N 343 THR H2 H N N 344 THR HA H N N 345 THR HB H N N 346 THR HG1 H N N 347 THR HG21 H N N 348 THR HG22 H N N 349 THR HG23 H N N 350 THR HXT H N N 351 TYR N N N N 352 TYR CA C N S 353 TYR C C N N 354 TYR O O N N 355 TYR CB C N N 356 TYR CG C Y N 357 TYR CD1 C Y N 358 TYR CD2 C Y N 359 TYR CE1 C Y N 360 TYR CE2 C Y N 361 TYR CZ C Y N 362 TYR OH O N N 363 TYR OXT O N N 364 TYR H H N N 365 TYR H2 H N N 366 TYR HA H N N 367 TYR HB2 H N N 368 TYR HB3 H N N 369 TYR HD1 H N N 370 TYR HD2 H N N 371 TYR HE1 H N N 372 TYR HE2 H N N 373 TYR HH H N N 374 TYR HXT H N N 375 VAL N N N N 376 VAL CA C N S 377 VAL C C N N 378 VAL O O N N 379 VAL CB C N N 380 VAL CG1 C N N 381 VAL CG2 C N N 382 VAL OXT O N N 383 VAL H H N N 384 VAL H2 H N N 385 VAL HA H N N 386 VAL HB H N N 387 VAL HG11 H N N 388 VAL HG12 H N N 389 VAL HG13 H N N 390 VAL HG21 H N N 391 VAL HG22 H N N 392 VAL HG23 H N N 393 VAL HXT H N N 394 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 GUN N9 C8 sing Y N 138 GUN N9 C4 sing Y N 139 GUN N9 HN9 sing N N 140 GUN C8 N7 doub Y N 141 GUN C8 H8 sing N N 142 GUN N7 C5 sing Y N 143 GUN C5 C6 sing N N 144 GUN C5 C4 doub Y N 145 GUN C6 O6 doub N N 146 GUN C6 N1 sing N N 147 GUN N1 C2 sing N N 148 GUN N1 HN1 sing N N 149 GUN C2 N2 sing N N 150 GUN C2 N3 doub N N 151 GUN N2 HN21 sing N N 152 GUN N2 HN22 sing N N 153 GUN N3 C4 sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 SO4 S O1 doub N N 316 SO4 S O2 doub N N 317 SO4 S O3 sing N N 318 SO4 S O4 sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TYR N CA sing N N 336 TYR N H sing N N 337 TYR N H2 sing N N 338 TYR CA C sing N N 339 TYR CA CB sing N N 340 TYR CA HA sing N N 341 TYR C O doub N N 342 TYR C OXT sing N N 343 TYR CB CG sing N N 344 TYR CB HB2 sing N N 345 TYR CB HB3 sing N N 346 TYR CG CD1 doub Y N 347 TYR CG CD2 sing Y N 348 TYR CD1 CE1 sing Y N 349 TYR CD1 HD1 sing N N 350 TYR CD2 CE2 doub Y N 351 TYR CD2 HD2 sing N N 352 TYR CE1 CZ doub Y N 353 TYR CE1 HE1 sing N N 354 TYR CE2 CZ sing Y N 355 TYR CE2 HE2 sing N N 356 TYR CZ OH sing N N 357 TYR OH HH sing N N 358 TYR OXT HXT sing N N 359 VAL N CA sing N N 360 VAL N H sing N N 361 VAL N H2 sing N N 362 VAL CA C sing N N 363 VAL CA CB sing N N 364 VAL CA HA sing N N 365 VAL C O doub N N 366 VAL C OXT sing N N 367 VAL CB CG1 sing N N 368 VAL CB CG2 sing N N 369 VAL CB HB sing N N 370 VAL CG1 HG11 sing N N 371 VAL CG1 HG12 sing N N 372 VAL CG1 HG13 sing N N 373 VAL CG2 HG21 sing N N 374 VAL CG2 HG22 sing N N 375 VAL CG2 HG23 sing N N 376 VAL OXT HXT sing N N 377 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 GUANINE GUN 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3O1K _pdbx_initial_refinement_model.details 'pdb entry 3O1K' #