HEADER LYASE 27-DEC-11 3V9O TITLE CRYSTAL STRUCTURE OF DIHYDRONEOPTERIN ALDOLASE (BTH_I0291) FROM TITLE 2 BURKHOLDERIA THAILENDENSIS BOUND TO GUANINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRONEOPTERIN ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I0291; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, DIHYDRONEOPTERIN ALDOLASE, LYASE, KEYWDS 3 DIHYDRONEOPTERIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3V9O 1 REMARK SEQADV REVDAT 2 30-OCT-13 3V9O 1 JRNL REVDAT 1 25-JAN-12 3V9O 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0775 - 3.1264 0.99 2808 123 0.1722 0.2042 REMARK 3 2 3.1264 - 2.4816 1.00 2656 139 0.1788 0.2153 REMARK 3 3 2.4816 - 2.1680 1.00 2625 149 0.1664 0.1936 REMARK 3 4 2.1680 - 1.9698 1.00 2593 164 0.1639 0.1944 REMARK 3 5 1.9698 - 1.8286 1.00 2591 142 0.1654 0.1956 REMARK 3 6 1.8286 - 1.7208 1.00 2596 127 0.1604 0.2108 REMARK 3 7 1.7208 - 1.6346 1.00 2572 154 0.1708 0.2087 REMARK 3 8 1.6346 - 1.5634 1.00 2585 131 0.1834 0.1898 REMARK 3 9 1.5634 - 1.5033 1.00 2586 131 0.2096 0.2234 REMARK 3 10 1.5033 - 1.4514 1.00 2567 130 0.2380 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.24 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 40.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34290 REMARK 3 B22 (A**2) : -1.34290 REMARK 3 B33 (A**2) : 2.68570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1039 REMARK 3 ANGLE : 1.812 1411 REMARK 3 CHIRALITY : 0.104 165 REMARK 3 PLANARITY : 0.010 181 REMARK 3 DIHEDRAL : 13.669 396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 10:14) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8882 -36.9194 31.7120 REMARK 3 T TENSOR REMARK 3 T11: 1.2959 T22: 0.5895 REMARK 3 T33: 0.5394 T12: 0.1322 REMARK 3 T13: -0.2213 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 8.2839 L22: 1.8379 REMARK 3 L33: 7.5330 L12: 2.6737 REMARK 3 L13: -2.6560 L23: 1.6949 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -1.5725 S13: 0.1063 REMARK 3 S21: 1.7297 S22: 0.2701 S23: -0.7351 REMARK 3 S31: -0.6539 S32: 0.2299 S33: -0.1552 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 15:33) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4878 -29.5292 14.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.1481 REMARK 3 T33: 0.0689 T12: -0.0089 REMARK 3 T13: -0.0172 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.8300 L22: 6.5733 REMARK 3 L33: 4.1466 L12: 1.6890 REMARK 3 L13: -1.8790 L23: -4.0678 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.0438 S13: -0.0235 REMARK 3 S21: 0.1632 S22: -0.1663 S23: -0.1417 REMARK 3 S31: -0.1695 S32: 0.1884 S33: 0.1472 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 34:72) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7808 -32.7930 17.0526 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.1171 REMARK 3 T33: 0.1122 T12: 0.0298 REMARK 3 T13: 0.0333 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.4590 L22: 2.7113 REMARK 3 L33: 2.4012 L12: 1.1479 REMARK 3 L13: -1.0305 L23: -1.1641 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.0332 S13: 0.0079 REMARK 3 S21: 0.1948 S22: 0.0686 S23: 0.3465 REMARK 3 S31: -0.1154 S32: -0.1958 S33: -0.1094 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 73:82) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8776 -23.6065 14.1401 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.2059 REMARK 3 T33: 0.1776 T12: 0.0219 REMARK 3 T13: -0.0004 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.3579 L22: 4.2348 REMARK 3 L33: 7.3601 L12: 0.1280 REMARK 3 L13: 0.0616 L23: -5.5738 REMARK 3 S TENSOR REMARK 3 S11: -0.1353 S12: -0.0480 S13: 0.1764 REMARK 3 S21: 0.0013 S22: 0.5009 S23: 0.6222 REMARK 3 S31: -0.0294 S32: -0.3629 S33: -0.4273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 83:86) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9067 -11.2685 12.3367 REMARK 3 T TENSOR REMARK 3 T11: 0.4906 T22: 0.3674 REMARK 3 T33: 0.6301 T12: -0.0051 REMARK 3 T13: -0.1373 T23: 0.1479 REMARK 3 L TENSOR REMARK 3 L11: 7.3486 L22: 7.1343 REMARK 3 L33: 1.9479 L12: 1.4254 REMARK 3 L13: 0.5482 L23: -3.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.6140 S13: -0.0302 REMARK 3 S21: 1.2950 S22: -0.6114 S23: -1.6183 REMARK 3 S31: -0.6443 S32: 0.5166 S33: 0.5027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 87:131) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5596 -21.9132 17.0647 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1114 REMARK 3 T33: 0.0842 T12: 0.0093 REMARK 3 T13: -0.0032 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 5.3220 L22: 0.8575 REMARK 3 L33: 2.5059 L12: 0.9503 REMARK 3 L13: -3.1448 L23: -0.4851 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.0237 S13: 0.0787 REMARK 3 S21: 0.0714 S22: -0.0374 S23: 0.0721 REMARK 3 S31: -0.0276 S32: -0.0513 S33: 0.0293 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 132:136) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4168 -25.5455 30.5617 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.3645 REMARK 3 T33: 0.1202 T12: -0.0491 REMARK 3 T13: 0.0341 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 6.4531 L22: 6.3210 REMARK 3 L33: 2.1628 L12: -3.7100 REMARK 3 L13: -1.3887 L23: 0.5995 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -1.0905 S13: 0.1140 REMARK 3 S21: 1.1284 S22: 0.0438 S23: 0.0719 REMARK 3 S31: 0.2331 S32: -0.0586 S33: 0.0459 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3O1K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.2 M LITHIUM REMARK 280 SULFATE, 0.1 M TRIS, SSGCID: BUTHA.17925.A.A1 PW33456, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 36.99200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 36.99200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 36.99200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 36.99200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 36.99200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.48800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 36.99200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.48800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.99200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.48800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.99200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.48800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.98400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -73.98400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -73.98400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 73.98400 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 232 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 MET A 6 REMARK 465 PHE A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 35 REMARK 465 GLU A 36 REMARK 465 HIS A 37 REMARK 465 GLU A 38 REMARK 465 LYS A 39 REMARK 465 ARG A 40 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 ARG A 138 REMARK 465 ALA A 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 135 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 58 31.96 -143.65 REMARK 500 ALA A 103 48.66 -84.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GUN A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.17925.A RELATED DB: TARGETDB DBREF 3V9O A 1 139 UNP Q2T1V0 Q2T1V0_BURTA 1 139 SEQADV 3V9O GLY A -3 UNP Q2T1V0 EXPRESSION TAG SEQADV 3V9O PRO A -2 UNP Q2T1V0 EXPRESSION TAG SEQADV 3V9O GLY A -1 UNP Q2T1V0 EXPRESSION TAG SEQADV 3V9O SER A 0 UNP Q2T1V0 EXPRESSION TAG SEQRES 1 A 143 GLY PRO GLY SER MET THR GLY THR THR MET PHE ALA ALA SEQRES 2 A 143 LEU LEU HIS PRO ARG LEU ALA ASP CYS ARG ARG LEU TYR SEQRES 3 A 143 LEU ARG ASN HIS GLU VAL TYR MET ASN ILE GLY ALA PHE SEQRES 4 A 143 GLU HIS GLU LYS ARG GLY GLU GLN ARG VAL VAL ILE ASN SEQRES 5 A 143 VAL ASP LEU PHE VAL PRO LEU ALA LEU THR THR PRO VAL SEQRES 6 A 143 GLU ASP LYS LEU ARG GLU VAL VAL ASP TYR ASP LEU MET SEQRES 7 A 143 LYS GLN SER VAL ALA GLN CYS VAL ALA ARG GLY HIS ILE SEQRES 8 A 143 HIS LEU GLN GLU THR LEU CYS ASP ALA ILE ALA ALA SER SEQRES 9 A 143 LEU LEU ALA HIS ASP ALA VAL ARG ALA VAL ARG VAL SER SEQRES 10 A 143 THR GLU LYS PRO ASP ALA TYR PRO ASP CYS ASP ALA VAL SEQRES 11 A 143 GLY VAL GLU VAL PHE ARG ILE LYS ASP GLU GLU ARG ALA HET EDO A 140 4 HET EDO A 141 4 HET EDO A 142 4 HET EDO A 143 4 HET EDO A 144 4 HET GUN A 145 11 HET SO4 A 146 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM GUN GUANINE HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 GUN C5 H5 N5 O FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *94(H2 O) HELIX 1 1 ALA A 56 THR A 58 5 3 HELIX 2 2 LYS A 64 VAL A 68 5 5 HELIX 3 3 ASP A 72 ARG A 84 1 13 HELIX 4 4 LEU A 89 ALA A 103 1 15 SHEET 1 A 4 CYS A 18 MET A 30 0 SHEET 2 A 4 GLN A 43 PRO A 54 -1 O GLN A 43 N MET A 30 SHEET 3 A 4 ALA A 109 LYS A 116 -1 O ALA A 109 N PHE A 52 SHEET 4 A 4 VAL A 126 ILE A 133 -1 O VAL A 126 N LYS A 116 SITE 1 AC1 4 PRO A 54 ASP A 105 VAL A 107 ARG A 108 SITE 1 AC2 4 GLU A 42 LYS A 75 PRO A 121 ASP A 122 SITE 1 AC3 3 ALA A 96 HOH A 151 HOH A 174 SITE 1 AC4 3 ASN A 25 ARG A 44 HOH A 163 SITE 1 AC5 5 CYS A 81 ARG A 84 ILE A 87 ALA A 96 SITE 2 AC5 5 HOH A 192 SITE 1 AC6 10 LEU A 65 VAL A 68 VAL A 69 ASP A 70 SITE 2 AC6 10 TYR A 71 LEU A 89 GLN A 90 GLU A 91 SITE 3 AC6 10 HOH A 153 HOH A 214 SITE 1 AC7 4 ASN A 31 GLY A 85 HIS A 86 HOH A 176 CRYST1 73.984 73.984 110.976 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009011 0.00000