HEADER TRANSFERASE 27-DEC-11 3V9P TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM BURKHOLDERIA TITLE 2 THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I2154, TMK, YP_442675.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, THYMIDYLATE KINASE, BURKHOLDERIA THAILANDENSIS, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3V9P 1 REMARK SEQADV REVDAT 2 09-OCT-13 3V9P 1 JRNL REVDAT 1 25-JAN-12 3V9P 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1786 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3254 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2300 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4406 ; 1.451 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5510 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 5.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;31.933 ;21.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;12.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;14.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3669 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 735 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 206 REMARK 3 RESIDUE RANGE : A 250 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8170 69.0460 11.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.0071 REMARK 3 T33: 0.0531 T12: 0.0097 REMARK 3 T13: 0.0001 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2259 L22: 0.5471 REMARK 3 L33: 0.8154 L12: 0.1377 REMARK 3 L13: -0.0557 L23: -0.3815 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.0048 S13: 0.0105 REMARK 3 S21: -0.0313 S22: -0.0269 S23: 0.0067 REMARK 3 S31: -0.1332 S32: -0.0319 S33: 0.0341 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 206 REMARK 3 RESIDUE RANGE : B 250 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0530 86.6500 -1.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.0040 REMARK 3 T33: 0.0459 T12: 0.0132 REMARK 3 T13: 0.0133 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1428 L22: 1.6009 REMARK 3 L33: 0.6474 L12: 0.1379 REMARK 3 L13: 0.1082 L23: 0.7343 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0002 S13: -0.0120 REMARK 3 S21: -0.2526 S22: -0.0471 S23: 0.0388 REMARK 3 S31: -0.0900 S32: 0.0044 S33: 0.0598 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3V9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU MICROMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.960 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : 0.52700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3LD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS WIZARD 3/4 SCREEN H6: 30% MPD, 25% REMARK 280 PEG 1500, 100MM HOAC/NAOAC; PROTEIN BUTHA.01616.A.A1 PS01176 AT REMARK 280 56.3 MG/ML, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.13000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -38.98500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.06500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 155 REMARK 465 LYS A 156 REMARK 465 PHE A 157 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 13 CG OD1 OD2 REMARK 470 THR A 18 OG1 CG2 REMARK 470 THR A 19 OG1 CG2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 ASP B 13 CG OD1 OD2 REMARK 470 THR B 18 OG1 CG2 REMARK 470 THR B 19 OG1 CG2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 PHE B 157 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 98 151.59 83.56 REMARK 500 PHE A 99 -151.61 -158.40 REMARK 500 ALA A 146 22.84 -151.63 REMARK 500 ARG B 98 147.99 83.27 REMARK 500 PHE B 99 -147.76 -154.47 REMARK 500 ALA B 146 39.40 -145.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.01616.A RELATED DB: TARGETDB DBREF 3V9P A 1 206 UNP Q2SWM4 KTHY_BURTA 1 206 DBREF 3V9P B 1 206 UNP Q2SWM4 KTHY_BURTA 1 206 SEQADV 3V9P MET A -20 UNP Q2SWM4 INITIATING METHIONINE SEQADV 3V9P ALA A -19 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -18 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -17 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -16 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -15 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -14 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS A -13 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P MET A -12 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY A -11 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P THR A -10 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P LEU A -9 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLU A -8 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P ALA A -7 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLN A -6 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P THR A -5 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLN A -4 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY A -3 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P PRO A -2 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY A -1 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P SER A 0 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P MET B -20 UNP Q2SWM4 INITIATING METHIONINE SEQADV 3V9P ALA B -19 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -18 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -17 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -16 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -15 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -14 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P HIS B -13 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P MET B -12 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY B -11 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P THR B -10 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P LEU B -9 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLU B -8 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P ALA B -7 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLN B -6 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P THR B -5 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLN B -4 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY B -3 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P PRO B -2 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P GLY B -1 UNP Q2SWM4 EXPRESSION TAG SEQADV 3V9P SER B 0 UNP Q2SWM4 EXPRESSION TAG SEQRES 1 A 227 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 227 ALA GLN THR GLN GLY PRO GLY SER MET ALA ARG GLY LYS SEQRES 3 A 227 PHE ILE THR PHE GLU GLY ILE ASP GLY ALA GLY LYS THR SEQRES 4 A 227 THR HIS LEU GLN TRP PHE CYS ASP ARG LEU GLN GLU ARG SEQRES 5 A 227 LEU GLY PRO ALA GLY ARG HIS VAL VAL VAL THR ARG GLU SEQRES 6 A 227 PRO GLY GLY THR ARG LEU GLY GLU THR LEU ARG GLU ILE SEQRES 7 A 227 LEU LEU ASN GLN PRO MET ASP LEU GLU THR GLU ALA LEU SEQRES 8 A 227 LEU MET PHE ALA GLY ARG ARG GLU HIS LEU ALA LEU VAL SEQRES 9 A 227 ILE GLU PRO ALA LEU ALA ARG GLY ASP TRP VAL VAL SER SEQRES 10 A 227 ASP ARG PHE THR ASP ALA THR PHE ALA TYR GLN GLY GLY SEQRES 11 A 227 GLY ARG GLY LEU PRO ARG ASP LYS LEU GLU ALA LEU GLU SEQRES 12 A 227 ARG TRP VAL GLN GLY GLY PHE GLN PRO ASP LEU THR VAL SEQRES 13 A 227 LEU PHE ASP VAL PRO PRO GLN ILE ALA SER ALA ARG ARG SEQRES 14 A 227 GLY ALA VAL ARG MET PRO ASP LYS PHE GLU SER GLU SER SEQRES 15 A 227 ASP ALA PHE PHE ALA ARG THR ARG ALA GLU TYR LEU ARG SEQRES 16 A 227 ARG ALA GLN GLU ALA PRO HIS ARG PHE VAL ILE VAL ASP SEQRES 17 A 227 SER SER GLU PRO ILE ALA GLN ILE ARG LYS GLN LEU GLU SEQRES 18 A 227 GLY VAL LEU ALA ALA LEU SEQRES 1 B 227 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 227 ALA GLN THR GLN GLY PRO GLY SER MET ALA ARG GLY LYS SEQRES 3 B 227 PHE ILE THR PHE GLU GLY ILE ASP GLY ALA GLY LYS THR SEQRES 4 B 227 THR HIS LEU GLN TRP PHE CYS ASP ARG LEU GLN GLU ARG SEQRES 5 B 227 LEU GLY PRO ALA GLY ARG HIS VAL VAL VAL THR ARG GLU SEQRES 6 B 227 PRO GLY GLY THR ARG LEU GLY GLU THR LEU ARG GLU ILE SEQRES 7 B 227 LEU LEU ASN GLN PRO MET ASP LEU GLU THR GLU ALA LEU SEQRES 8 B 227 LEU MET PHE ALA GLY ARG ARG GLU HIS LEU ALA LEU VAL SEQRES 9 B 227 ILE GLU PRO ALA LEU ALA ARG GLY ASP TRP VAL VAL SER SEQRES 10 B 227 ASP ARG PHE THR ASP ALA THR PHE ALA TYR GLN GLY GLY SEQRES 11 B 227 GLY ARG GLY LEU PRO ARG ASP LYS LEU GLU ALA LEU GLU SEQRES 12 B 227 ARG TRP VAL GLN GLY GLY PHE GLN PRO ASP LEU THR VAL SEQRES 13 B 227 LEU PHE ASP VAL PRO PRO GLN ILE ALA SER ALA ARG ARG SEQRES 14 B 227 GLY ALA VAL ARG MET PRO ASP LYS PHE GLU SER GLU SER SEQRES 15 B 227 ASP ALA PHE PHE ALA ARG THR ARG ALA GLU TYR LEU ARG SEQRES 16 B 227 ARG ALA GLN GLU ALA PRO HIS ARG PHE VAL ILE VAL ASP SEQRES 17 B 227 SER SER GLU PRO ILE ALA GLN ILE ARG LYS GLN LEU GLU SEQRES 18 B 227 GLY VAL LEU ALA ALA LEU HET MRD A 250 8 HET GOL A 252 6 HET GOL A 253 6 HET ACT A 255 4 HET MRD B 250 8 HET ACT B 255 4 HET PEG B 207 7 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MRD 2(C6 H14 O2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *260(H2 O) HELIX 1 1 THR A 18 GLY A 33 1 16 HELIX 2 2 PRO A 34 GLY A 36 5 3 HELIX 3 3 THR A 48 GLN A 61 1 14 HELIX 4 4 ASP A 64 VAL A 83 1 20 HELIX 5 5 VAL A 83 ARG A 90 1 8 HELIX 6 6 PHE A 99 GLY A 108 1 10 HELIX 7 7 PRO A 114 GLY A 127 1 14 HELIX 8 8 ILE A 143 ARG A 147 5 5 HELIX 9 9 SER A 159 ALA A 179 1 21 HELIX 10 10 PRO A 191 LEU A 206 1 16 HELIX 11 11 THR B 18 GLY B 33 1 16 HELIX 12 12 PRO B 34 GLY B 36 5 3 HELIX 13 13 THR B 48 GLN B 61 1 14 HELIX 14 14 ASP B 64 VAL B 83 1 20 HELIX 15 15 VAL B 83 ARG B 90 1 8 HELIX 16 16 PHE B 99 GLY B 108 1 10 HELIX 17 17 PRO B 114 GLY B 127 1 14 HELIX 18 18 ILE B 143 ARG B 147 5 5 HELIX 19 19 SER B 159 ALA B 179 1 21 HELIX 20 20 PRO B 191 LEU B 206 1 16 SHEET 1 A 5 VAL A 39 ARG A 43 0 SHEET 2 A 5 TRP A 93 ASP A 97 1 O VAL A 95 N THR A 42 SHEET 3 A 5 PHE A 6 GLU A 10 1 N ILE A 7 O VAL A 94 SHEET 4 A 5 LEU A 133 ASP A 138 1 O PHE A 137 N GLU A 10 SHEET 5 A 5 PHE A 183 ASP A 187 1 O VAL A 186 N LEU A 136 SHEET 1 B 5 VAL B 39 ARG B 43 0 SHEET 2 B 5 TRP B 93 ASP B 97 1 O VAL B 95 N THR B 42 SHEET 3 B 5 PHE B 6 GLU B 10 1 N ILE B 7 O VAL B 94 SHEET 4 B 5 LEU B 133 ASP B 138 1 O VAL B 135 N THR B 8 SHEET 5 B 5 PHE B 183 ASP B 187 1 O VAL B 186 N LEU B 136 CISPEP 1 GLU A 44 PRO A 45 0 -2.77 CISPEP 2 GLU B 44 PRO B 45 0 -6.17 SITE 1 AC1 6 MET A 72 ARG A 76 THR A 103 TYR A 106 SITE 2 AC1 6 GLN A 107 HOH A 280 SITE 1 AC2 7 PHE A 183 ILE A 185 HOH A 208 HOH A 329 SITE 2 AC2 7 ALA B 170 ARG B 174 GLN B 177 SITE 1 AC3 9 GLU A 190 PRO A 191 ILE A 192 HOH A 297 SITE 2 AC3 9 ALA B 81 LEU B 82 PRO B 86 HOH B 232 SITE 3 AC3 9 HOH B 284 SITE 1 AC4 9 GLU A 44 PRO A 45 GLY A 46 GLY A 47 SITE 2 AC4 9 GLY A 51 GLY A 75 ARG A 76 HOH A 216 SITE 3 AC4 9 HOH A 237 SITE 1 AC5 6 MET B 72 ARG B 76 THR B 103 TYR B 106 SITE 2 AC5 6 GLN B 107 HOH B 305 SITE 1 AC6 9 GLU B 44 PRO B 45 GLY B 46 GLY B 47 SITE 2 AC6 9 GLY B 51 GLY B 75 ARG B 76 HOH B 227 SITE 3 AC6 9 HOH B 291 SITE 1 AC7 5 PRO A 180 ALA B 166 ARG B 169 ALA B 170 SITE 2 AC7 5 HOH B 319 CRYST1 68.130 77.970 84.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011886 0.00000