HEADER HYDROLASE/DNA 28-DEC-11 3V9S TITLE CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A PRODUCT SSDNA (AAC) TITLE 2 WITH ONE MG IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE T; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXORIBONUCLEASE T, RNASE T; COMPND 5 EC: 3.1.13.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS DNASE/RNASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-Y.HSIAO,H.S.YUAN REVDAT 3 08-NOV-23 3V9S 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 3V9S 1 JRNL REVDAT 1 11-JUL-12 3V9S 0 JRNL AUTH Y.-Y.HSIAO,Y.DUH,Y.P.CHEN,Y.T.WANG,H.S.YUAN JRNL TITL HOW AN EXONUCLEASE DECIDES WHERE TO STOP IN TRIMMING OF JRNL TITL 2 NUCLEIC ACIDS: CRYSTAL STRUCTURES OF RNASE T-PRODUCT JRNL TITL 3 COMPLEXES JRNL REF NUCLEIC ACIDS RES. V. 40 8144 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22718982 JRNL DOI 10.1093/NAR/GKS548 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6613 - 5.2772 0.98 1744 165 0.2149 0.2489 REMARK 3 2 5.2772 - 4.1946 0.99 1702 134 0.1721 0.1704 REMARK 3 3 4.1946 - 3.6661 0.99 1648 138 0.1785 0.2002 REMARK 3 4 3.6661 - 3.3317 0.99 1653 140 0.1918 0.2411 REMARK 3 5 3.3317 - 3.0933 0.99 1643 133 0.1979 0.2381 REMARK 3 6 3.0933 - 2.9112 1.00 1643 141 0.2098 0.2212 REMARK 3 7 2.9112 - 2.7656 1.00 1625 148 0.2175 0.2574 REMARK 3 8 2.7656 - 2.6454 1.00 1643 135 0.2162 0.2943 REMARK 3 9 2.6454 - 2.5436 1.00 1664 110 0.2242 0.2912 REMARK 3 10 2.5436 - 2.4559 1.00 1622 142 0.2206 0.2651 REMARK 3 11 2.4559 - 2.3792 1.00 1638 132 0.2084 0.2770 REMARK 3 12 2.3792 - 2.3112 1.00 1608 138 0.2134 0.2927 REMARK 3 13 2.3112 - 2.2504 0.98 1590 148 0.2331 0.2875 REMARK 3 14 2.2504 - 2.1955 0.96 1582 126 0.2808 0.3204 REMARK 3 15 2.1955 - 2.1456 1.00 1608 135 0.2323 0.2700 REMARK 3 16 2.1456 - 2.1000 1.00 1624 141 0.2425 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 32.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.48770 REMARK 3 B22 (A**2) : -5.85040 REMARK 3 B33 (A**2) : -0.63740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3416 REMARK 3 ANGLE : 0.712 4652 REMARK 3 CHIRALITY : 0.054 516 REMARK 3 PLANARITY : 0.002 591 REMARK 3 DIHEDRAL : 14.282 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3NGY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, 14% PEG1000, 10MM REMARK 280 SPERMIDINE, 5MM MAGNESIUM CHLORIDE, PH 3.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE1 GLU A 94 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 DT C 1 REMARK 465 DT C 2 REMARK 465 DA C 3 REMARK 465 DC C 4 REMARK 465 DT D 1 REMARK 465 DT D 2 REMARK 465 DA D 3 REMARK 465 DC D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 625 1.84 REMARK 500 O HOH A 598 O HOH B 573 1.90 REMARK 500 OE1 GLN B 71 O HOH B 561 1.96 REMARK 500 NH1 ARG B 200 O HOH B 535 1.97 REMARK 500 OH TYR A 93 O HOH A 550 1.97 REMARK 500 O HOH A 616 O HOH D 108 2.00 REMARK 500 O HOH B 572 O HOH B 581 2.00 REMARK 500 O HOH A 615 O HOH A 630 2.01 REMARK 500 NH2 ARG A 114 O HOH A 611 2.03 REMARK 500 O HOH B 549 O HOH B 562 2.05 REMARK 500 OD2 ASP B 12 O HOH B 510 2.11 REMARK 500 O HOH A 611 O HOH A 632 2.13 REMARK 500 O HOH A 534 O HOH A 564 2.13 REMARK 500 NE2 GLN A 71 O HOH A 591 2.14 REMARK 500 O HOH B 603 O HOH B 604 2.14 REMARK 500 OE1 GLU B 188 O HOH B 590 2.15 REMARK 500 O HOH A 516 O HOH A 542 2.18 REMARK 500 OD2 ASP A 174 O HOH A 629 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 94 OE1 GLU A 94 2555 1.25 REMARK 500 CG GLU A 94 OE1 GLU A 94 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 94 OE1 - CD - OE2 ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU A 94 CG - CD - OE1 ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 47.47 31.59 REMARK 500 ASP A 55 -87.98 -115.00 REMARK 500 PHE A 146 -20.39 -146.41 REMARK 500 GLU A 214 68.60 -119.54 REMARK 500 ARG B 15 52.24 30.05 REMARK 500 ASP B 55 -87.07 -112.62 REMARK 500 PHE B 146 -15.64 -144.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 HOH A 419 O 64.2 REMARK 620 3 HOH A 472 O 89.2 69.1 REMARK 620 4 HOH A 489 O 73.3 66.8 135.8 REMARK 620 5 DA C 6 O3' 155.7 91.9 86.1 93.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 23 OD1 REMARK 620 2 ASP B 23 OD2 45.7 REMARK 620 3 HOH B 470 O 74.6 97.0 REMARK 620 4 HOH B 569 O 68.2 95.8 110.9 REMARK 620 5 DA D 6 O3' 131.0 173.8 76.8 86.5 REMARK 620 6 DC D 7 OP1 173.3 127.6 107.7 115.9 55.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NGY RELATED DB: PDB REMARK 900 RELATED ID: 3NGZ RELATED DB: PDB REMARK 900 RELATED ID: 3NH0 RELATED DB: PDB REMARK 900 RELATED ID: 3NH1 RELATED DB: PDB REMARK 900 RELATED ID: 3NH2 RELATED DB: PDB REMARK 900 RELATED ID: 3V9U RELATED DB: PDB REMARK 900 RELATED ID: 3V9W RELATED DB: PDB REMARK 900 RELATED ID: 3V9X RELATED DB: PDB REMARK 900 RELATED ID: 3V9Z RELATED DB: PDB REMARK 900 RELATED ID: 3VA0 RELATED DB: PDB REMARK 900 RELATED ID: 3VA3 RELATED DB: PDB DBREF 3V9S A 1 215 UNP P30014 RNT_ECOLI 1 215 DBREF 3V9S B 1 215 UNP P30014 RNT_ECOLI 1 215 DBREF 3V9S C 1 7 PDB 3V9S 3V9S 1 7 DBREF 3V9S D 1 7 PDB 3V9S 3V9S 1 7 SEQADV 3V9S MET A -19 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY A -18 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER A -17 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER A -16 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -15 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -14 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -13 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -12 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -11 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A -10 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER A -9 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER A -8 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY A -7 UNP P30014 EXPRESSION TAG SEQADV 3V9S LEU A -6 UNP P30014 EXPRESSION TAG SEQADV 3V9S VAL A -5 UNP P30014 EXPRESSION TAG SEQADV 3V9S PRO A -4 UNP P30014 EXPRESSION TAG SEQADV 3V9S ARG A -3 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY A -2 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER A -1 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS A 0 UNP P30014 EXPRESSION TAG SEQADV 3V9S MET B -19 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY B -18 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER B -17 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER B -16 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -15 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -14 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -13 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -12 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -11 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B -10 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER B -9 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER B -8 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY B -7 UNP P30014 EXPRESSION TAG SEQADV 3V9S LEU B -6 UNP P30014 EXPRESSION TAG SEQADV 3V9S VAL B -5 UNP P30014 EXPRESSION TAG SEQADV 3V9S PRO B -4 UNP P30014 EXPRESSION TAG SEQADV 3V9S ARG B -3 UNP P30014 EXPRESSION TAG SEQADV 3V9S GLY B -2 UNP P30014 EXPRESSION TAG SEQADV 3V9S SER B -1 UNP P30014 EXPRESSION TAG SEQADV 3V9S HIS B 0 UNP P30014 EXPRESSION TAG SEQRES 1 A 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 235 LEU VAL PRO ARG GLY SER HIS MET SER ASP ASN ALA GLN SEQRES 3 A 235 LEU THR GLY LEU CYS ASP ARG PHE ARG GLY PHE TYR PRO SEQRES 4 A 235 VAL VAL ILE ASP VAL GLU THR ALA GLY PHE ASN ALA LYS SEQRES 5 A 235 THR ASP ALA LEU LEU GLU ILE ALA ALA ILE THR LEU LYS SEQRES 6 A 235 MET ASP GLU GLN GLY TRP LEU MET PRO ASP THR THR LEU SEQRES 7 A 235 HIS PHE HIS VAL GLU PRO PHE VAL GLY ALA ASN LEU GLN SEQRES 8 A 235 PRO GLU ALA LEU ALA PHE ASN GLY ILE ASP PRO ASN ASP SEQRES 9 A 235 PRO ASP ARG GLY ALA VAL SER GLU TYR GLU ALA LEU HIS SEQRES 10 A 235 GLU ILE PHE LYS VAL VAL ARG LYS GLY ILE LYS ALA SER SEQRES 11 A 235 GLY CYS ASN ARG ALA ILE MET VAL ALA HIS ASN ALA ASN SEQRES 12 A 235 PHE ASP HIS SER PHE MET MET ALA ALA ALA GLU ARG ALA SEQRES 13 A 235 SER LEU LYS ARG ASN PRO PHE HIS PRO PHE ALA THR PHE SEQRES 14 A 235 ASP THR ALA ALA LEU ALA GLY LEU ALA LEU GLY GLN THR SEQRES 15 A 235 VAL LEU SER LYS ALA CYS GLN THR ALA GLY MET ASP PHE SEQRES 16 A 235 ASP SER THR GLN ALA HIS SER ALA LEU TYR ASP THR GLU SEQRES 17 A 235 ARG THR ALA VAL LEU PHE CYS GLU ILE VAL ASN ARG TRP SEQRES 18 A 235 LYS ARG LEU GLY GLY TRP PRO LEU SER ALA ALA GLU GLU SEQRES 19 A 235 VAL SEQRES 1 B 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 235 LEU VAL PRO ARG GLY SER HIS MET SER ASP ASN ALA GLN SEQRES 3 B 235 LEU THR GLY LEU CYS ASP ARG PHE ARG GLY PHE TYR PRO SEQRES 4 B 235 VAL VAL ILE ASP VAL GLU THR ALA GLY PHE ASN ALA LYS SEQRES 5 B 235 THR ASP ALA LEU LEU GLU ILE ALA ALA ILE THR LEU LYS SEQRES 6 B 235 MET ASP GLU GLN GLY TRP LEU MET PRO ASP THR THR LEU SEQRES 7 B 235 HIS PHE HIS VAL GLU PRO PHE VAL GLY ALA ASN LEU GLN SEQRES 8 B 235 PRO GLU ALA LEU ALA PHE ASN GLY ILE ASP PRO ASN ASP SEQRES 9 B 235 PRO ASP ARG GLY ALA VAL SER GLU TYR GLU ALA LEU HIS SEQRES 10 B 235 GLU ILE PHE LYS VAL VAL ARG LYS GLY ILE LYS ALA SER SEQRES 11 B 235 GLY CYS ASN ARG ALA ILE MET VAL ALA HIS ASN ALA ASN SEQRES 12 B 235 PHE ASP HIS SER PHE MET MET ALA ALA ALA GLU ARG ALA SEQRES 13 B 235 SER LEU LYS ARG ASN PRO PHE HIS PRO PHE ALA THR PHE SEQRES 14 B 235 ASP THR ALA ALA LEU ALA GLY LEU ALA LEU GLY GLN THR SEQRES 15 B 235 VAL LEU SER LYS ALA CYS GLN THR ALA GLY MET ASP PHE SEQRES 16 B 235 ASP SER THR GLN ALA HIS SER ALA LEU TYR ASP THR GLU SEQRES 17 B 235 ARG THR ALA VAL LEU PHE CYS GLU ILE VAL ASN ARG TRP SEQRES 18 B 235 LYS ARG LEU GLY GLY TRP PRO LEU SER ALA ALA GLU GLU SEQRES 19 B 235 VAL SEQRES 1 C 7 DT DT DA DC DA DA DC SEQRES 1 D 7 DT DT DA DC DA DA DC HET MG A 301 1 HET CO A 302 1 HET MG B 301 1 HETNAM MG MAGNESIUM ION HETNAM CO COBALT (II) ION FORMUL 5 MG 2(MG 2+) FORMUL 6 CO CO 2+ FORMUL 8 HOH *458(H2 O) HELIX 1 1 GLY A 9 PHE A 14 1 6 HELIX 2 2 GLN A 71 GLY A 79 1 9 HELIX 3 3 ASP A 84 GLY A 88 5 5 HELIX 4 4 SER A 91 GLY A 111 1 21 HELIX 5 5 ALA A 122 ALA A 136 1 15 HELIX 6 6 THR A 151 GLY A 160 1 10 HELIX 7 7 VAL A 163 ALA A 171 1 9 HELIX 8 8 ASP A 176 ALA A 180 5 5 HELIX 9 9 SER A 182 LEU A 204 1 23 HELIX 10 10 PRO A 208 GLU A 214 5 7 HELIX 11 11 GLY B 9 PHE B 14 1 6 HELIX 12 12 GLN B 71 GLY B 79 1 9 HELIX 13 13 SER B 91 GLY B 111 1 21 HELIX 14 14 ALA B 122 ALA B 136 1 15 HELIX 15 15 THR B 151 GLY B 160 1 10 HELIX 16 16 VAL B 163 ALA B 171 1 9 HELIX 17 17 ASP B 176 ALA B 180 5 5 HELIX 18 18 SER B 182 LEU B 204 1 23 HELIX 19 19 SER B 210 GLU B 214 5 5 SHEET 1 A 5 LEU A 52 HIS A 61 0 SHEET 2 A 5 LEU A 36 MET A 46 -1 N THR A 43 O ASP A 55 SHEET 3 A 5 PHE A 17 THR A 26 -1 N GLU A 25 O LEU A 37 SHEET 4 A 5 ARG A 114 ALA A 119 1 O ARG A 114 N TYR A 18 SHEET 5 A 5 PHE A 143 ASP A 150 1 O PHE A 149 N MET A 117 SHEET 1 B 6 ALA B 89 VAL B 90 0 SHEET 2 B 6 LEU B 52 VAL B 62 1 N HIS B 61 O VAL B 90 SHEET 3 B 6 LEU B 36 MET B 46 -1 N LEU B 37 O VAL B 62 SHEET 4 B 6 PHE B 17 THR B 26 -1 N GLU B 25 O LEU B 37 SHEET 5 B 6 ARG B 114 ALA B 119 1 O ARG B 114 N TYR B 18 SHEET 6 B 6 PHE B 143 ASP B 150 1 O PHE B 149 N MET B 117 LINK OD1 ASP A 23 MG MG A 301 1555 1555 2.68 LINK MG MG A 301 O HOH A 419 1555 1555 2.89 LINK MG MG A 301 O HOH A 472 1555 1555 2.26 LINK MG MG A 301 O HOH A 489 1555 1555 2.37 LINK MG MG A 301 O3' DA C 6 1555 1555 2.56 LINK OD1 ASP B 23 MG MG B 301 1555 1555 2.79 LINK OD2 ASP B 23 MG MG B 301 1555 1555 2.87 LINK MG MG B 301 O HOH B 470 1555 1555 2.51 LINK MG MG B 301 O HOH B 569 1555 1555 2.43 LINK MG MG B 301 O3' DA D 6 1555 1555 2.71 LINK MG MG B 301 OP1 DC D 7 1555 1555 2.65 CISPEP 1 TRP A 207 PRO A 208 0 -3.87 CISPEP 2 TRP B 207 PRO B 208 0 -2.81 SITE 1 AC1 6 ASP A 23 HOH A 419 HOH A 472 HOH A 489 SITE 2 AC1 6 DA C 6 DC C 7 SITE 1 AC2 4 HIS A 61 ARG A 87 HIS B 61 ARG B 87 SITE 1 AC3 5 ASP B 23 HOH B 470 HOH B 569 DA D 6 SITE 2 AC3 5 DC D 7 CRYST1 96.063 105.840 46.918 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021314 0.00000