HEADER CELL CYCLE 28-DEC-11 3VA1 TITLE CRYSTAL STRUCTURE OF THE MAMMALIAN MDC1 FHA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FHA DOMAIN (UNP RESIDUES 29-139); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MDC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL CYCLE, FHA DOMAIN, DNA-DAMAGE, MDC1 DIMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR H.H.WU,P.Y.WU,K.F.HUANG,Y.Y.KAO,M.D.TSAI REVDAT 2 20-MAR-24 3VA1 1 REMARK SEQADV REVDAT 1 01-FEB-12 3VA1 0 JRNL AUTH H.H.WU,P.Y.WU,K.F.HUANG,Y.Y.KAO,M.D.TSAI JRNL TITL STRUCTURAL DELINEATION OF MDC1-FHA DOMAIN BINDING WITH JRNL TITL 2 CHK2-PTHR68. JRNL REF BIOCHEMISTRY 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22211259 JRNL DOI 10.1021/BI201709W REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 23441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 2.38000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1723 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2346 ; 2.055 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.950 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;17.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.227 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1336 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1723 ; 7.105 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 65 ;23.092 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1756 ;13.596 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 135 REMARK 3 RESIDUE RANGE : A 201 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4479 6.1664 24.1078 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0722 REMARK 3 T33: 0.0253 T12: -0.0144 REMARK 3 T13: 0.0200 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6606 L22: 1.7186 REMARK 3 L33: 1.7689 L12: 0.2605 REMARK 3 L13: -0.7699 L23: 0.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: -0.1987 S13: 0.0860 REMARK 3 S21: 0.0812 S22: -0.0440 S23: -0.0165 REMARK 3 S31: -0.1033 S32: 0.0948 S33: -0.0765 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 134 REMARK 3 RESIDUE RANGE : B 201 B 363 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0547 -0.5180 5.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.0310 REMARK 3 T33: 0.0401 T12: 0.0093 REMARK 3 T13: -0.0121 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.0842 L22: 2.0534 REMARK 3 L33: 2.8613 L12: 0.1394 REMARK 3 L13: 0.0473 L23: -0.4162 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.0393 S13: -0.2525 REMARK 3 S21: -0.3692 S22: -0.0636 S23: 0.0871 REMARK 3 S31: 0.2567 S32: -0.1249 S33: 0.0195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 67.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.2M LI2SO4, 0.1M REMARK 280 TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.53800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.09100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.09100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.53800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 PRO A 136 REMARK 465 PRO A 137 REMARK 465 PRO A 138 REMARK 465 LEU A 139 REMARK 465 MET B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 VAL B 22 REMARK 465 PRO B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 HIS B 27 REMARK 465 VAL B 135 REMARK 465 PRO B 136 REMARK 465 PRO B 137 REMARK 465 PRO B 138 REMARK 465 LEU B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 131 CG HIS A 131 CD2 0.056 REMARK 500 TRP B 83 CE2 TRP B 83 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 34 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 124 -118.91 47.99 REMARK 500 GLN B 118 -5.34 81.57 REMARK 500 ALA B 124 -125.57 52.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VA4 RELATED DB: PDB DBREF 3VA1 A 29 139 UNP Q5PSV9 MDC1_MOUSE 29 139 DBREF 3VA1 B 29 139 UNP Q5PSV9 MDC1_MOUSE 29 139 SEQADV 3VA1 MET A 8 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY A 9 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER A 10 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER A 11 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 12 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 13 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 14 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 15 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 16 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 17 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER A 18 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER A 19 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY A 20 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 LEU A 21 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 VAL A 22 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 PRO A 23 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 ARG A 24 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY A 25 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER A 26 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS A 27 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 MET A 28 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 MET B 8 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY B 9 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER B 10 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER B 11 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 12 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 13 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 14 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 15 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 16 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 17 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER B 18 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER B 19 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY B 20 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 LEU B 21 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 VAL B 22 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 PRO B 23 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 ARG B 24 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 GLY B 25 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 SER B 26 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 HIS B 27 UNP Q5PSV9 EXPRESSION TAG SEQADV 3VA1 MET B 28 UNP Q5PSV9 EXPRESSION TAG SEQRES 1 A 132 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 132 LEU VAL PRO ARG GLY SER HIS MET GLU PRO ILE GLY GLN SEQRES 3 A 132 LEU ARG LEU PHE SER GLY THR HIS GLY PRO GLU ARG ASP SEQRES 4 A 132 PHE PRO LEU TYR LEU GLY LYS ASN VAL VAL GLY ARG SER SEQRES 5 A 132 PRO ASP CYS SER VAL ALA LEU PRO PHE PRO SER ILE SER SEQRES 6 A 132 LYS GLN HIS ALA VAL ILE GLU ILE SER ALA TRP ASN LYS SEQRES 7 A 132 ALA PRO ILE LEU GLN ASP CYS GLY SER LEU ASN GLY THR SEQRES 8 A 132 GLN ILE VAL LYS PRO PRO ARG VAL LEU PRO PRO GLY VAL SEQRES 9 A 132 SER HIS ARG LEU ARG ASP GLN GLU LEU ILE LEU PHE ALA SEQRES 10 A 132 ASP PHE PRO CYS GLN TYR HIS ARG LEU ASP VAL PRO PRO SEQRES 11 A 132 PRO LEU SEQRES 1 B 132 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 132 LEU VAL PRO ARG GLY SER HIS MET GLU PRO ILE GLY GLN SEQRES 3 B 132 LEU ARG LEU PHE SER GLY THR HIS GLY PRO GLU ARG ASP SEQRES 4 B 132 PHE PRO LEU TYR LEU GLY LYS ASN VAL VAL GLY ARG SER SEQRES 5 B 132 PRO ASP CYS SER VAL ALA LEU PRO PHE PRO SER ILE SER SEQRES 6 B 132 LYS GLN HIS ALA VAL ILE GLU ILE SER ALA TRP ASN LYS SEQRES 7 B 132 ALA PRO ILE LEU GLN ASP CYS GLY SER LEU ASN GLY THR SEQRES 8 B 132 GLN ILE VAL LYS PRO PRO ARG VAL LEU PRO PRO GLY VAL SEQRES 9 B 132 SER HIS ARG LEU ARG ASP GLN GLU LEU ILE LEU PHE ALA SEQRES 10 B 132 ASP PHE PRO CYS GLN TYR HIS ARG LEU ASP VAL PRO PRO SEQRES 11 B 132 PRO LEU HET SO4 A 201 5 HET SO4 B 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *146(H2 O) SHEET 1 A 6 ARG A 45 LEU A 49 0 SHEET 2 A 6 GLY A 32 LEU A 36 -1 N LEU A 36 O ARG A 45 SHEET 3 A 6 PHE A 126 ARG A 132 -1 O GLN A 129 N ARG A 35 SHEET 4 A 6 LEU A 120 PHE A 123 -1 N PHE A 123 O PHE A 126 SHEET 5 A 6 THR A 98 ILE A 100 -1 N GLN A 99 O LEU A 122 SHEET 6 A 6 ARG A 105 VAL A 106 -1 O ARG A 105 N ILE A 100 SHEET 1 B 5 VAL A 64 ALA A 65 0 SHEET 2 B 5 GLY A 52 GLY A 57 1 N VAL A 55 O VAL A 64 SHEET 3 B 5 ALA A 76 ILE A 80 -1 O ALA A 76 N VAL A 56 SHEET 4 B 5 ILE A 88 ASP A 91 -1 O ILE A 88 N GLU A 79 SHEET 5 B 5 HIS A 113 ARG A 114 -1 O HIS A 113 N LEU A 89 SHEET 1 C 6 ARG B 45 LEU B 49 0 SHEET 2 C 6 GLY B 32 LEU B 36 -1 N LEU B 36 O ARG B 45 SHEET 3 C 6 PHE B 126 ARG B 132 -1 O GLN B 129 N ARG B 35 SHEET 4 C 6 LEU B 120 PHE B 123 -1 N ILE B 121 O CYS B 128 SHEET 5 C 6 THR B 98 ILE B 100 -1 N GLN B 99 O LEU B 122 SHEET 6 C 6 ARG B 105 VAL B 106 -1 O ARG B 105 N ILE B 100 SHEET 1 D 5 VAL B 64 ALA B 65 0 SHEET 2 D 5 GLY B 52 GLY B 57 1 N VAL B 55 O VAL B 64 SHEET 3 D 5 ALA B 76 ILE B 80 -1 O ILE B 80 N GLY B 52 SHEET 4 D 5 ILE B 88 ASP B 91 -1 O ILE B 88 N GLU B 79 SHEET 5 D 5 HIS B 113 ARG B 114 -1 O HIS B 113 N LEU B 89 CISPEP 1 LYS A 102 PRO A 103 0 -8.22 CISPEP 2 LYS B 102 PRO B 103 0 -11.99 SITE 1 AC1 3 ARG A 58 SER A 72 LYS A 73 SITE 1 AC2 7 PRO A 103 PRO A 104 ARG A 105 ARG B 58 SITE 2 AC2 7 SER B 72 LYS B 73 GLN B 99 CRYST1 37.076 48.590 134.182 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007453 0.00000