HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-DEC-11 3VAD TITLE CRYSTAL STRUCTURE OF I170F MUTANT BRANCHED-CHAIN ALPHA-KETOACID TITLE 2 DEHYDROGENASE KINASE IN COMPLEX WITH 3,6-DICHLOROBENZO[B]THIOPHENE-2- TITLE 3 CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: [3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE KINASE, BCKD- COMPND 6 KINASE, BCKDHKIN; COMPND 7 EC: 2.7.11.4; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: BCKDK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GROESL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCKHISB KEYWDS GHKL PROTEIN KINASE, ALLOSTERIC KINASE INHIBITOR, BRANCHED-CHAIN KEYWDS 2 ALPHA-KETOACID, BRANCHED-CHAIN AMINO ACIDS, MAPLE SYRUP URINE KEYWDS 3 DISEASE, DIABETES AND OBESITY, BERGERAT NUCLEOTIDE-BINDING FOLD, KEYWDS 4 PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.AHMED,W.J.GUI,S.C.TSO,J.L.CHUANG,R.M.WYNN,D.T.CHUANG REVDAT 3 28-FEB-24 3VAD 1 REMARK SEQADV LINK REVDAT 2 08-OCT-14 3VAD 1 AUTHOR REVDAT 1 16-JAN-13 3VAD 0 JRNL AUTH K.AHMED,W.J.GUI,S.C.TSO,J.L.CHUANG,R.M WYNN,D.T.CHUANG JRNL TITL CRYSTAL STRUCTURE OF I170F MUTANT BRANCHED-CHAIN JRNL TITL 2 ALPHA-KETOACID DEHYDROGENASE KINASE IN COMPLEX WITH JRNL TITL 3 3,6-DICHLOROBENZO[B]THIOPHENE-2-CARBOXYLIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5070 - 4.9739 1.00 2827 121 0.2209 0.2616 REMARK 3 2 4.9739 - 3.9490 1.00 2661 141 0.1996 0.2459 REMARK 3 3 3.9490 - 3.4502 1.00 2603 148 0.2259 0.2581 REMARK 3 4 3.4502 - 3.1348 0.99 2592 153 0.2419 0.3096 REMARK 3 5 3.1348 - 2.9102 0.99 2589 133 0.2513 0.2848 REMARK 3 6 2.9102 - 2.7387 1.00 2536 154 0.2720 0.3672 REMARK 3 7 2.7387 - 2.6015 0.98 2529 141 0.2852 0.3605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.810 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26100 REMARK 3 B22 (A**2) : -0.26100 REMARK 3 B33 (A**2) : 0.52200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2674 REMARK 3 ANGLE : 1.370 3632 REMARK 3 CHIRALITY : 0.085 394 REMARK 3 PLANARITY : 0.005 462 REMARK 3 DIHEDRAL : 16.183 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : 0.74600 REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 0.1 M TRIS, 1.9 M NACL, REMARK 280 250MM KCL, 400MM ARG-HCL,2MM MGCL2, 5% GLYCEROL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.03950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.03950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.01750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.03950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.03950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.01750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.03950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.03950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.01750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.03950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.03950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.01750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -29 REMARK 465 ILE A -28 REMARK 465 LEU A -27 REMARK 465 THR A -26 REMARK 465 SER A -25 REMARK 465 VAL A -24 REMARK 465 LEU A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 GLY A -20 REMARK 465 PRO A -19 REMARK 465 ARG A -18 REMARK 465 SER A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 LEU A -13 REMARK 465 TRP A -12 REMARK 465 PRO A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 SER A -4 REMARK 465 LEU A -3 REMARK 465 ARG A -2 REMARK 465 VAL A -1 REMARK 465 ARG A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 LYS A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 PHE A 23 REMARK 465 TYR A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ILE A 29 REMARK 465 ASP A 30 REMARK 465 VAL A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 GLU A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 SER A 309 REMARK 465 THR A 310 REMARK 465 GLN A 311 REMARK 465 ASP A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 ILE A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 PHE A 319 REMARK 465 GLY A 320 REMARK 465 HIS A 321 REMARK 465 LEU A 322 REMARK 465 ASP A 323 REMARK 465 MET A 324 REMARK 465 HIS A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 GLY A 328 REMARK 465 GLN A 329 REMARK 465 SER A 330 REMARK 465 GLY A 331 REMARK 465 PRO A 332 REMARK 465 MET A 333 REMARK 465 GLY A 375 REMARK 465 ARG A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 SER A 379 REMARK 465 PHE A 380 REMARK 465 ARG A 381 REMARK 465 ILE A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 41 -75.35 -122.19 REMARK 500 ARG A 286 42.79 -106.96 REMARK 500 HIS A 302 -8.86 79.28 REMARK 500 ILE A 362 -63.37 -126.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 249 OD1 REMARK 620 2 ADP A 401 O2A 85.3 REMARK 620 3 ADP A 401 O2B 81.7 80.1 REMARK 620 4 HOH A 501 O 72.7 94.3 154.2 REMARK 620 5 HOH A 502 O 79.3 161.5 87.5 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 298 O REMARK 620 2 ASP A 300 O 93.9 REMARK 620 3 PHE A 303 O 123.5 96.5 REMARK 620 4 GLY A 337 O 156.5 81.7 80.0 REMARK 620 5 ADP A 401 O1A 92.3 149.0 105.2 80.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0F1 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0F1 A 405 DBREF 3VAD A -29 382 UNP Q00972 BCKD_RAT 1 412 SEQADV 3VAD PHE A 170 UNP Q00972 ILE 200 ENGINEERED MUTATION SEQADV 3VAD HIS A 383 UNP Q00972 EXPRESSION TAG SEQADV 3VAD HIS A 384 UNP Q00972 EXPRESSION TAG SEQADV 3VAD HIS A 385 UNP Q00972 EXPRESSION TAG SEQADV 3VAD HIS A 386 UNP Q00972 EXPRESSION TAG SEQADV 3VAD HIS A 387 UNP Q00972 EXPRESSION TAG SEQADV 3VAD HIS A 388 UNP Q00972 EXPRESSION TAG SEQRES 1 A 418 MET ILE LEU THR SER VAL LEU GLY SER GLY PRO ARG SER SEQRES 2 A 418 GLY SER SER LEU TRP PRO LEU LEU GLY SER SER LEU SER SEQRES 3 A 418 LEU ARG VAL ARG SER THR SER ALA THR ASP THR HIS HIS SEQRES 4 A 418 VAL GLU LEU ALA ARG GLU ARG SER LYS THR VAL THR SER SEQRES 5 A 418 PHE TYR ASN GLN SER ALA ILE ASP VAL VAL ALA GLU LYS SEQRES 6 A 418 PRO SER VAL ARG LEU THR PRO THR MET MET LEU TYR SER SEQRES 7 A 418 GLY ARG SER GLN ASP GLY SER HIS LEU LEU LYS SER GLY SEQRES 8 A 418 ARG TYR LEU GLN GLN GLU LEU PRO VAL ARG ILE ALA HIS SEQRES 9 A 418 ARG ILE LYS GLY PHE ARG SER LEU PRO PHE ILE ILE GLY SEQRES 10 A 418 CYS ASN PRO THR ILE LEU HIS VAL HIS GLU LEU TYR ILE SEQRES 11 A 418 ARG ALA PHE GLN LYS LEU THR ASP PHE PRO PRO ILE LYS SEQRES 12 A 418 ASP GLN ALA ASP GLU ALA GLN TYR CYS GLN LEU VAL ARG SEQRES 13 A 418 GLN LEU LEU ASP ASP HIS LYS ASP VAL VAL THR LEU LEU SEQRES 14 A 418 ALA GLU GLY LEU ARG GLU SER ARG LYS HIS ILE GLU ASP SEQRES 15 A 418 GLU LYS LEU VAL ARG TYR PHE LEU ASP LYS THR LEU THR SEQRES 16 A 418 SER ARG LEU GLY PHE ARG MET LEU ALA THR HIS HIS LEU SEQRES 17 A 418 ALA LEU HIS GLU ASP LYS PRO ASP PHE VAL GLY ILE ILE SEQRES 18 A 418 CYS THR ARG LEU SER PRO LYS LYS ILE ILE GLU LYS TRP SEQRES 19 A 418 VAL ASP PHE ALA ARG ARG LEU CYS GLU HIS LYS TYR GLY SEQRES 20 A 418 ASN ALA PRO ARG VAL ARG ILE ASN GLY HIS VAL ALA ALA SEQRES 21 A 418 ARG PHE PRO PHE ILE PRO MET PRO LEU ASP TYR ILE LEU SEQRES 22 A 418 PRO GLU LEU LEU LYS ASN ALA MET ARG ALA THR MET GLU SEQRES 23 A 418 SER HIS LEU ASP THR PRO TYR ASN VAL PRO ASP VAL VAL SEQRES 24 A 418 ILE THR ILE ALA ASN ASN ASP VAL ASP LEU ILE ILE ARG SEQRES 25 A 418 ILE SER ASP ARG GLY GLY GLY ILE ALA HIS LYS ASP LEU SEQRES 26 A 418 ASP ARG VAL MET ASP TYR HIS PHE THR THR ALA GLU ALA SEQRES 27 A 418 SER THR GLN ASP PRO ARG ILE SER PRO LEU PHE GLY HIS SEQRES 28 A 418 LEU ASP MET HIS SER GLY GLY GLN SER GLY PRO MET HIS SEQRES 29 A 418 GLY PHE GLY PHE GLY LEU PRO THR SER ARG ALA TYR ALA SEQRES 30 A 418 GLU TYR LEU GLY GLY SER LEU GLN LEU GLN SER LEU GLN SEQRES 31 A 418 GLY ILE GLY THR ASP VAL TYR LEU ARG LEU ARG HIS ILE SEQRES 32 A 418 ASP GLY ARG GLU GLU SER PHE ARG ILE HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS HET ADP A 401 27 HET MG A 402 1 HET K A 403 1 HET 0F1 A 404 14 HET 0F1 A 405 14 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM 0F1 3,6-DICHLORO-1-BENZOTHIOPHENE-2-CARBOXYLIC ACID FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 K K 1+ FORMUL 5 0F1 2(C9 H4 CL2 O2 S) FORMUL 7 HOH *2(H2 O) HELIX 1 1 GLY A 54 SER A 81 1 28 HELIX 2 2 PRO A 83 CYS A 88 1 6 HELIX 3 3 ASN A 89 PHE A 109 1 21 HELIX 4 4 ASP A 114 HIS A 132 1 19 HELIX 5 5 ASP A 134 ARG A 147 1 14 HELIX 6 6 GLU A 153 LEU A 180 1 28 HELIX 7 7 SER A 196 GLY A 217 1 22 HELIX 8 8 ILE A 235 GLU A 256 1 22 HELIX 9 9 PHE A 338 LEU A 350 1 13 SHEET 1 A 2 ARG A 39 LEU A 40 0 SHEET 2 A 2 MET A 45 LEU A 46 -1 O LEU A 46 N ARG A 39 SHEET 1 B 3 PHE A 187 VAL A 188 0 SHEET 2 B 3 ILE A 191 LEU A 195 -1 O ILE A 191 N VAL A 188 SHEET 3 B 3 PHE A 232 PHE A 234 -1 O PHE A 232 N LEU A 195 SHEET 1 C 5 VAL A 222 GLY A 226 0 SHEET 2 C 5 VAL A 268 ASN A 274 1 O ILE A 270 N ARG A 223 SHEET 3 C 5 ASP A 278 ASP A 285 -1 O ARG A 282 N THR A 271 SHEET 4 C 5 GLY A 363 ARG A 371 -1 O LEU A 370 N LEU A 279 SHEET 5 C 5 SER A 353 LEU A 359 -1 N LEU A 359 O GLY A 363 LINK OD1 ASN A 249 MG MG A 402 1555 1555 2.44 LINK O VAL A 298 K K A 403 1555 1555 2.82 LINK O ASP A 300 K K A 403 1555 1555 2.82 LINK O PHE A 303 K K A 403 1555 1555 2.77 LINK O GLY A 337 K K A 403 1555 1555 2.92 LINK O2A ADP A 401 MG MG A 402 1555 1555 2.03 LINK O2B ADP A 401 MG MG A 402 1555 1555 2.23 LINK O1A ADP A 401 K K A 403 1555 1555 2.74 LINK MG MG A 402 O HOH A 501 1555 1555 2.20 LINK MG MG A 402 O HOH A 502 1555 1555 2.07 SITE 1 AC1 20 ASN A 249 ARG A 252 ALA A 253 ASP A 285 SITE 2 AC1 20 GLY A 289 ILE A 290 VAL A 298 THR A 304 SITE 3 AC1 20 THR A 305 GLY A 335 PHE A 336 GLY A 337 SITE 4 AC1 20 GLY A 339 LEU A 340 PRO A 341 THR A 364 SITE 5 AC1 20 MG A 402 K A 403 HOH A 501 HOH A 502 SITE 1 AC2 4 ASN A 249 ADP A 401 HOH A 501 HOH A 502 SITE 1 AC3 6 VAL A 298 ASP A 300 PHE A 303 GLY A 337 SITE 2 AC3 6 PRO A 341 ADP A 401 SITE 1 AC4 11 LEU A 68 ILE A 72 TYR A 99 VAL A 125 SITE 2 AC4 11 LEU A 128 LEU A 129 HIS A 132 ARG A 167 SITE 3 AC4 11 PHE A 170 ARG A 171 0F1 A 405 SITE 1 AC5 9 ARG A 71 ILE A 72 ARG A 75 TYR A 99 SITE 2 AC5 9 HIS A 132 SER A 166 ARG A 167 PHE A 170 SITE 3 AC5 9 0F1 A 404 CRYST1 128.079 128.079 74.035 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013507 0.00000