HEADER TOXIN 03-JAN-12 3VBZ TITLE CRYSTAL STRUCTURE OF TAIPOXIN BETA SUBUNIT ISOFORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2 HOMOLOG, TAIPOXIN BETA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OXYURANUS SCUTELLATUS SCUTELLATUS; SOURCE 3 ORGANISM_COMMON: AUSTRALIAN TAIPAN; SOURCE 4 ORGANISM_TAXID: 8667; SOURCE 5 SECRETION: VENOM KEYWDS PHOSPHOLIPASE A2 FOLD, PLA2 FOLD, NEUROTOXIN, PHOSPHOLIPASE, CALCIUM KEYWDS 2 BINDING, TAIPOXIN ALPHA SUBUNIT BINDING, TAIPOXIN GAMMA SUBUNIT KEYWDS 3 BINDING, SECRETED, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR L.CENDRON,I.MICETIC,P.POLVERINO,M.BELTRAMINI,M.PAOLI REVDAT 3 13-SEP-23 3VBZ 1 SEQADV REVDAT 2 26-SEP-12 3VBZ 1 JRNL REVDAT 1 25-JUL-12 3VBZ 0 JRNL AUTH L.CENDRON,I.MICETIC,P.POLVERINO DE LAURETO,M.PAOLI JRNL TITL STRUCTURAL ANALYSIS OF TRIMERIC PHOSPHOLIPASE A(2) JRNL TITL 2 NEUROTOXIN FROM THE AUSTRALIAN TAIPAN SNAKE VENOM. JRNL REF FEBS J. V. 279 3121 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22776098 JRNL DOI 10.1111/J.1742-4658.2012.08691.X REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1906 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2596 ; 2.002 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 5.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.831 ;24.082 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ;15.452 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1488 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 1.251 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 1.974 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 727 ; 3.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 697 ; 5.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 118 5 REMARK 3 1 B 1 B 118 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 468 ; 0.27 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 437 ; 0.62 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 468 ; 1.35 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 437 ; 1.68 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6430 9.7075 -32.9588 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0700 REMARK 3 T33: 0.0773 T12: -0.0132 REMARK 3 T13: 0.0056 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.7247 L22: 3.3153 REMARK 3 L33: 4.1972 L12: -0.1702 REMARK 3 L13: -0.9038 L23: 1.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.3504 S13: -0.1117 REMARK 3 S21: -0.2612 S22: -0.0466 S23: -0.1759 REMARK 3 S31: 0.0779 S32: 0.0285 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7987 8.6893 -29.0082 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.0386 REMARK 3 T33: 0.0584 T12: -0.0015 REMARK 3 T13: -0.0017 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.9398 L22: 0.4524 REMARK 3 L33: 1.3914 L12: -0.0485 REMARK 3 L13: 0.2059 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1686 S13: 0.0721 REMARK 3 S21: -0.0358 S22: 0.0058 S23: 0.0451 REMARK 3 S31: -0.0845 S32: -0.0609 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2975 2.2716 -26.4890 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1655 REMARK 3 T33: 0.0862 T12: 0.1140 REMARK 3 T13: -0.0116 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.9367 L22: 9.5749 REMARK 3 L33: 7.8767 L12: -4.5863 REMARK 3 L13: -5.8582 L23: 5.6628 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: -0.1246 S13: -0.0148 REMARK 3 S21: 0.5262 S22: 0.1927 S23: -0.5702 REMARK 3 S31: 0.7442 S32: 0.9519 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0394 5.8929 -31.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0467 REMARK 3 T33: 0.0790 T12: -0.0079 REMARK 3 T13: 0.0119 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6136 L22: 0.9477 REMARK 3 L33: 2.3598 L12: -0.3531 REMARK 3 L13: 0.6296 L23: -0.3280 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.2065 S13: -0.0507 REMARK 3 S21: -0.0939 S22: -0.0062 S23: 0.0689 REMARK 3 S31: 0.0755 S32: -0.0026 S33: -0.0583 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6825 -2.9244 0.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0570 REMARK 3 T33: 0.0587 T12: -0.0046 REMARK 3 T13: 0.0020 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.3617 L22: 3.8868 REMARK 3 L33: 5.0290 L12: -1.0293 REMARK 3 L13: -0.6416 L23: 1.7539 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.1932 S13: 0.1188 REMARK 3 S21: 0.3332 S22: -0.0264 S23: 0.0415 REMARK 3 S31: -0.0402 S32: -0.2119 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3043 -2.1847 -10.5934 REMARK 3 T TENSOR REMARK 3 T11: 0.0589 T22: 0.0445 REMARK 3 T33: 0.0788 T12: -0.0098 REMARK 3 T13: -0.0013 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0067 L22: 0.4474 REMARK 3 L33: 1.0533 L12: -0.1859 REMARK 3 L13: 0.0915 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.1092 S13: -0.1004 REMARK 3 S21: 0.0171 S22: -0.0017 S23: 0.1131 REMARK 3 S31: 0.0725 S32: -0.2013 S33: 0.0196 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3025 4.2100 0.2844 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.1159 REMARK 3 T33: 0.1190 T12: -0.0084 REMARK 3 T13: -0.0013 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: -1.1749 L22: 9.4677 REMARK 3 L33: 11.0121 L12: 1.8737 REMARK 3 L13: -0.9059 L23: 4.1637 REMARK 3 S TENSOR REMARK 3 S11: 0.2239 S12: -0.2888 S13: -0.0141 REMARK 3 S21: 0.0991 S22: 0.1769 S23: -0.5559 REMARK 3 S31: -0.4678 S32: 0.5419 S33: -0.4008 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9416 0.2677 -7.0408 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.1002 REMARK 3 T33: 0.1194 T12: 0.0026 REMARK 3 T13: -0.0055 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.6999 L22: 1.3762 REMARK 3 L33: 1.5867 L12: 0.0662 REMARK 3 L13: 0.1678 L23: 0.1392 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.1864 S13: -0.0302 REMARK 3 S21: 0.0766 S22: -0.0034 S23: 0.2213 REMARK 3 S31: 0.0333 S32: -0.2437 S33: 0.0447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91232 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 33.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : 0.27800 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1AE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M HEPES SODIUM SALT, REMARK 280 1.0 M SODIUM ACETATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.24000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 17 C PRO B 18 N 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 32 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU B 20 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 31 -143.09 -119.96 REMARK 500 THR B 31 -143.06 -119.25 REMARK 500 LYS B 81 -63.06 -103.62 REMARK 500 ASN B 110 48.74 75.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 17 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VC0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TAIPOXIN BETA SUBUNIT ISOFORM 1 DBREF 3VBZ A 1 118 UNP P00615 PA22_OXYSC 1 118 DBREF 3VBZ B 1 118 UNP P00615 PA22_OXYSC 1 118 SEQADV 3VBZ PHE A 7 UNP P00615 LYS 7 VARIANT SEQADV 3VBZ THR A 31 UNP P00615 LYS 31 VARIANT SEQADV 3VBZ VAL A 32 UNP P00615 GLY 32 VARIANT SEQADV 3VBZ ARG A 34 UNP P00615 SER 34 VARIANT SEQADV 3VBZ THR A 54 UNP P00615 GLU 54 VARIANT SEQADV 3VBZ GLN A 68 UNP P00615 THR 68 VARIANT SEQADV 3VBZ ASN A 76 UNP P00615 PRO 76 VARIANT SEQADV 3VBZ GLU A 77 UNP P00615 TYR 77 VARIANT SEQADV 3VBZ LEU A 93 UNP P00615 PHE 93 VARIANT SEQADV 3VBZ LEU A 99 UNP P00615 PHE 99 VARIANT SEQADV 3VBZ PHE A 109 UNP P00615 SER 109 VARIANT SEQADV 3VBZ PHE B 7 UNP P00615 LYS 7 VARIANT SEQADV 3VBZ THR B 31 UNP P00615 LYS 31 VARIANT SEQADV 3VBZ VAL B 32 UNP P00615 GLY 32 VARIANT SEQADV 3VBZ ARG B 34 UNP P00615 SER 34 VARIANT SEQADV 3VBZ THR B 54 UNP P00615 GLU 54 VARIANT SEQADV 3VBZ GLN B 68 UNP P00615 THR 68 VARIANT SEQADV 3VBZ ASN B 76 UNP P00615 PRO 76 VARIANT SEQADV 3VBZ GLU B 77 UNP P00615 TYR 77 VARIANT SEQADV 3VBZ LEU B 93 UNP P00615 PHE 93 VARIANT SEQADV 3VBZ LEU B 99 UNP P00615 PHE 99 VARIANT SEQADV 3VBZ PHE B 109 UNP P00615 SER 109 VARIANT SEQRES 1 A 118 ASN LEU VAL GLN PHE GLY PHE MET ILE GLU CYS ALA ILE SEQRES 2 A 118 ARG ASN ARG ARG PRO ALA LEU ASP PHE MET ASN TYR GLY SEQRES 3 A 118 CYS TYR CYS GLY THR VAL GLY ARG GLY THR PRO VAL ASP SEQRES 4 A 118 ASP LEU ASP ARG CYS CYS GLN VAL HIS ASP GLU CYS TYR SEQRES 5 A 118 ALA THR ALA GLU LYS HIS GLY CYS TYR PRO SER LEU THR SEQRES 6 A 118 THR TYR GLN TRP GLU CYS ARG GLN VAL GLY ASN GLU CYS SEQRES 7 A 118 ASN SER LYS THR GLN CYS GLU VAL PHE VAL CYS ALA CYS SEQRES 8 A 118 ASP LEU ALA ALA ALA LYS CYS LEU ALA GLN GLU ASP TYR SEQRES 9 A 118 ASN PRO ALA HIS PHE ASN ILE ASN THR GLY GLU ARG CYS SEQRES 10 A 118 LYS SEQRES 1 B 118 ASN LEU VAL GLN PHE GLY PHE MET ILE GLU CYS ALA ILE SEQRES 2 B 118 ARG ASN ARG ARG PRO ALA LEU ASP PHE MET ASN TYR GLY SEQRES 3 B 118 CYS TYR CYS GLY THR VAL GLY ARG GLY THR PRO VAL ASP SEQRES 4 B 118 ASP LEU ASP ARG CYS CYS GLN VAL HIS ASP GLU CYS TYR SEQRES 5 B 118 ALA THR ALA GLU LYS HIS GLY CYS TYR PRO SER LEU THR SEQRES 6 B 118 THR TYR GLN TRP GLU CYS ARG GLN VAL GLY ASN GLU CYS SEQRES 7 B 118 ASN SER LYS THR GLN CYS GLU VAL PHE VAL CYS ALA CYS SEQRES 8 B 118 ASP LEU ALA ALA ALA LYS CYS LEU ALA GLN GLU ASP TYR SEQRES 9 B 118 ASN PRO ALA HIS PHE ASN ILE ASN THR GLY GLU ARG CYS SEQRES 10 B 118 LYS FORMUL 3 HOH *193(H2 O) HELIX 1 1 ASN A 1 ILE A 13 1 13 HELIX 2 2 PRO A 18 MET A 23 5 6 HELIX 3 3 ASP A 39 HIS A 58 1 20 HELIX 4 4 TYR A 61 THR A 65 5 5 HELIX 5 5 THR A 82 GLU A 102 1 21 HELIX 6 6 ASN A 105 PHE A 109 5 5 HELIX 7 7 ASN A 112 CYS A 117 1 6 HELIX 8 8 LEU B 2 ILE B 13 1 12 HELIX 9 9 PRO B 18 MET B 23 5 6 HELIX 10 10 ASP B 39 HIS B 58 1 20 HELIX 11 11 THR B 82 GLU B 102 1 21 HELIX 12 12 ASN B 105 PHE B 109 5 5 HELIX 13 13 ASN B 112 CYS B 117 1 6 SHEET 1 A 2 TRP A 69 CYS A 71 0 SHEET 2 A 2 ASN A 76 CYS A 78 -1 O GLU A 77 N GLU A 70 SHEET 1 B 2 TRP B 69 ARG B 72 0 SHEET 2 B 2 GLY B 75 CYS B 78 -1 O GLU B 77 N GLU B 70 SSBOND 1 CYS A 11 CYS A 71 1555 1555 2.12 SSBOND 2 CYS A 27 CYS A 117 1555 1555 2.02 SSBOND 3 CYS A 29 CYS A 45 1555 1555 2.17 SSBOND 4 CYS A 44 CYS A 98 1555 1555 2.03 SSBOND 5 CYS A 51 CYS A 91 1555 1555 2.04 SSBOND 6 CYS A 60 CYS A 84 1555 1555 2.01 SSBOND 7 CYS A 78 CYS A 89 1555 1555 2.01 SSBOND 8 CYS B 11 CYS B 71 1555 1555 2.11 SSBOND 9 CYS B 27 CYS B 117 1555 1555 2.09 SSBOND 10 CYS B 29 CYS B 45 1555 1555 2.05 SSBOND 11 CYS B 44 CYS B 98 1555 1555 2.05 SSBOND 12 CYS B 51 CYS B 91 1555 1555 2.05 SSBOND 13 CYS B 60 CYS B 84 1555 1555 2.03 SSBOND 14 CYS B 78 CYS B 89 1555 1555 2.00 CRYST1 52.570 36.480 65.560 90.00 110.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019022 0.000000 0.006957 0.00000 SCALE2 0.000000 0.027412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016241 0.00000