HEADER ISOMERASE 03-JAN-12 3VC5 TITLE CRYSTAL STRUCTURE OF ENOLASE TBIS_1083(TARGET EFI-502310) FROM TITLE 2 THERMOBISPORA BISPORA DSM 43833 COMPLEXED WITH PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBISPORA BISPORA; SOURCE 3 ORGANISM_TAXID: 469371; SOURCE 4 STRAIN: DSM 43833; SOURCE 5 GENE: TBIS_1083; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS DEHYDRATASE, MAGNESIUM BINDING, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 ENOLASE, ISOMERASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 13-SEP-23 3VC5 1 REMARK SEQADV REVDAT 3 24-JAN-18 3VC5 1 AUTHOR REVDAT 2 07-MAR-12 3VC5 1 AUTHOR JRNL REVDAT 1 01-FEB-12 3VC5 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ENOLASE TBIS_1083 FROM THERMOBISPORA JRNL TITL 2 BISPORA DSM 43833 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 78552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3313 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4528 ; 1.352 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;31.900 ;22.292 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2586 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2110 ; 5.201 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3393 ; 6.927 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1203 ; 8.863 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1132 ;12.102 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3313 ; 3.313 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, PH 8.5, 0.1M REMARK 280 TRIS-HCL, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.84550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.04600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.04600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.42275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.04600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.04600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.26825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.04600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.04600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.42275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.04600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.04600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.26825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.84550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 165.69100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 874 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 931 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 266 -43.06 -131.02 REMARK 500 ASP A 289 107.48 -161.71 REMARK 500 SER A 314 -161.95 -123.32 REMARK 500 LEU A 321 -164.49 -111.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VC6 RELATED DB: PDB REMARK 900 RELATED ID: EFI-502310 RELATED DB: TARGETTRACK DBREF 3VC5 A 1 419 UNP D6Y7Y6 D6Y7Y6_THEBD 1 419 SEQADV 3VC5 MET A -21 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -20 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -19 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -18 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -17 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -16 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 HIS A -15 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 SER A -14 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 SER A -13 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 GLY A -12 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 VAL A -11 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 ASP A -10 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 LEU A -9 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 GLY A -8 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 THR A -7 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 GLU A -6 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 ASN A -5 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 LEU A -4 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 TYR A -3 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 PHE A -2 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 GLN A -1 UNP D6Y7Y6 EXPRESSION TAG SEQADV 3VC5 SER A 0 UNP D6Y7Y6 EXPRESSION TAG SEQRES 1 A 441 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 441 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ILE ARG SEQRES 3 A 441 GLU VAL ARG VAL THR PRO VAL ALA PHE ARG ASP PRO PRO SEQRES 4 A 441 LEU LEU ASN ALA ALA GLY VAL HIS GLN PRO TRP ALA LEU SEQRES 5 A 441 ARG THR ILE VAL GLU VAL VAL THR ASP GLU GLY ILE THR SEQRES 6 A 441 GLY LEU GLY GLU THR TYR GLY ASP LEU ALA HIS LEU GLU SEQRES 7 A 441 GLN VAL ARG ALA ALA ALA ALA ARG LEU PRO GLY LEU ASP SEQRES 8 A 441 VAL TYR ALA LEU HIS ARG ILE TYR ARG ARG VAL ALA ASP SEQRES 9 A 441 VAL VAL GLY ALA ASN ILE VAL THR ASP MET HIS GLY LEU SEQRES 10 A 441 THR GLY SER SER SER ARG VAL LYS THR VAL ASP ARG VAL SEQRES 11 A 441 PHE ALA ALA PHE GLU VAL ALA CYS LEU ASP ILE GLN GLY SEQRES 12 A 441 LYS ALA ALA GLY ARG PRO VAL ALA ASP LEU LEU GLY GLY SEQRES 13 A 441 LYS VAL ARG ASP ALA VAL PRO TYR SER ALA TYR LEU PHE SEQRES 14 A 441 TYR LYS TRP ALA GLY HIS PRO GLY LYS PRO GLU ASP ARG SEQRES 15 A 441 PHE GLY PRO ALA LEU ASP PRO ASP GLY ILE VAL ALA GLN SEQRES 16 A 441 ALA ARG LEU LEU ILE GLY GLU TYR GLY PHE ARG SER ILE SEQRES 17 A 441 LYS LEU LYS GLY GLY VAL PHE PRO PRO GLU GLN GLU ALA SEQRES 18 A 441 GLU ALA ILE GLN ALA LEU ARG ASP ALA PHE PRO GLY LEU SEQRES 19 A 441 PRO LEU ARG LEU ASP PRO ASN ALA ALA TRP THR VAL GLU SEQRES 20 A 441 THR SER ILE ARG VAL GLY ARG ALA LEU ASP GLY VAL LEU SEQRES 21 A 441 GLU TYR LEU GLU ASP PRO THR PRO GLY ILE ASP GLY MET SEQRES 22 A 441 ALA ARG VAL ALA ALA GLU VAL PRO MET PRO LEU ALA THR SEQRES 23 A 441 ASN MET CYS VAL VAL THR PRO GLU HIS LEU PRO ALA ALA SEQRES 24 A 441 VAL GLU ARG ARG PRO ILE GLY VAL LEU LEU ILE ASP HIS SEQRES 25 A 441 HIS TYR TRP GLY GLY LEU VAL ARG SER ALA HIS ILE ALA SEQRES 26 A 441 THR LEU CYS ALA THR PHE GLY ILE GLU LEU SER MET HIS SEQRES 27 A 441 SER ASN SER HIS LEU GLY ILE SER LEU ALA ALA MET THR SEQRES 28 A 441 HIS LEU ALA ALA ALA THR PRO ALA ILE THR HIS ALA CYS SEQRES 29 A 441 ASP THR HIS THR PRO TRP GLN ASP GLY GLN ASP VAL VAL SEQRES 30 A 441 ALA PRO GLY ALA LEU ARG PHE VAL ASP GLY ALA VAL PRO SEQRES 31 A 441 VAL PRO ASP GLY PRO GLY LEU GLY VAL GLU LEU ASP ARG SEQRES 32 A 441 ASP ALA LEU ALA VAL MET HIS GLU GLN TYR GLU ARG CYS SEQRES 33 A 441 GLY ILE ARG THR ARG ASP ASP GLU GLY TYR MET ARG SER SEQRES 34 A 441 PHE ASP PRO SER PHE SER THR ARG ARG GLY PHE TRP HET PO4 A 501 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *448(H2 O) HELIX 1 1 ASP A 51 ARG A 64 1 14 HELIX 2 2 ALA A 72 GLY A 85 1 14 HELIX 3 3 SER A 100 GLY A 125 1 26 HELIX 4 4 PRO A 127 LEU A 132 1 6 HELIX 5 5 ASP A 166 GLY A 182 1 17 HELIX 6 6 PRO A 194 PHE A 209 1 16 HELIX 7 7 THR A 223 LEU A 234 1 12 HELIX 8 8 GLY A 247 ALA A 256 1 10 HELIX 9 9 THR A 270 GLU A 272 5 3 HELIX 10 10 HIS A 273 ARG A 281 1 9 HELIX 11 11 ASP A 289 GLY A 294 1 6 HELIX 12 12 GLY A 295 PHE A 309 1 15 HELIX 13 13 LEU A 321 ALA A 334 1 14 HELIX 14 14 HIS A 345 ASP A 350 5 6 HELIX 15 15 ASP A 380 CYS A 394 1 15 HELIX 16 16 ASP A 400 ASP A 409 1 10 SHEET 1 A 3 ILE A 3 ARG A 14 0 SHEET 2 A 3 TRP A 28 THR A 38 -1 O GLU A 35 N ARG A 7 SHEET 3 A 3 THR A 43 TYR A 49 -1 O GLY A 46 N VAL A 34 SHEET 1 B 2 LEU A 19 ASN A 20 0 SHEET 2 B 2 GLY A 23 VAL A 24 -1 O GLY A 23 N ASN A 20 SHEET 1 C 2 ALA A 139 PRO A 141 0 SHEET 2 C 2 ALA A 366 PRO A 368 -1 O VAL A 367 N VAL A 140 SHEET 1 D 7 ALA A 144 PHE A 147 0 SHEET 2 D 7 ILE A 186 LYS A 189 1 O LYS A 189 N LEU A 146 SHEET 3 D 7 LEU A 214 ASP A 217 1 O ASP A 217 N LEU A 188 SHEET 4 D 7 TYR A 240 GLU A 242 1 O GLU A 242 N LEU A 216 SHEET 5 D 7 LEU A 262 THR A 264 1 O ALA A 263 N LEU A 241 SHEET 6 D 7 VAL A 285 ILE A 288 1 O LEU A 287 N THR A 264 SHEET 7 D 7 GLU A 312 MET A 315 1 O GLU A 312 N LEU A 286 SITE 1 AC1 10 ASN A 20 HIS A 25 TYR A 145 LYS A 189 SITE 2 AC1 10 ASN A 318 HIS A 345 ARG A 399 HOH A 618 SITE 3 AC1 10 HOH A 642 HOH A 643 CRYST1 78.092 78.092 165.691 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012805 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006035 0.00000