HEADER OXIDOREDUCTASE 03-JAN-12 3VC7 TITLE CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM SINORHIZOBIUM TITLE 2 MELILOTI 1021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 266834; SOURCE 4 STRAIN: 1021; SOURCE 5 GENE: GI: 15966075, R02322, SMC01571; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CHS30 KEYWDS OXIDOREDUCTASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, NYSGRC EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,R.BHOSHLE,R.TORO,A.GIZZI,B.HILLERICH,R.SEIDEL,S.C.ALMO,NEW AUTHOR 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 06-DEC-23 3VC7 1 REMARK REVDAT 3 13-SEP-23 3VC7 1 REMARK SEQADV LINK REVDAT 2 02-APR-14 3VC7 1 REMARK REVDAT 1 18-JAN-12 3VC7 0 JRNL AUTH A.GHOSH,R.BHOSHLE,R.TORO,A.GIZZI,B.HILLERICH,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE PROTEIN FROM JRNL TITL 2 SINORHIZOBIUM MELILOTI 1021 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3251 - 4.2649 1.00 2765 165 0.1656 0.2008 REMARK 3 2 4.2649 - 3.3863 1.00 2768 133 0.1503 0.1830 REMARK 3 3 3.3863 - 2.9586 1.00 2746 159 0.1671 0.2347 REMARK 3 4 2.9586 - 2.6882 1.00 2753 129 0.1977 0.2498 REMARK 3 5 2.6882 - 2.4956 1.00 2750 146 0.2122 0.3084 REMARK 3 6 2.4956 - 2.3485 1.00 2726 159 0.2281 0.2861 REMARK 3 7 2.3485 - 2.2310 0.96 2635 144 0.2487 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.19900 REMARK 3 B22 (A**2) : 3.99550 REMARK 3 B33 (A**2) : -6.19460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.86130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3568 REMARK 3 ANGLE : 0.833 4819 REMARK 3 CHIRALITY : 0.058 564 REMARK 3 PLANARITY : 0.003 633 REMARK 3 DIHEDRAL : 14.158 1281 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 4:59) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1088 10.5222 -17.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.4895 T22: 0.2222 REMARK 3 T33: 0.2940 T12: 0.0325 REMARK 3 T13: -0.1227 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 4.1285 L22: 2.2628 REMARK 3 L33: 5.5642 L12: -1.3754 REMARK 3 L13: 0.5867 L23: -1.3447 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.1681 S13: 0.3609 REMARK 3 S21: -0.2067 S22: 0.0376 S23: 0.3568 REMARK 3 S31: -0.6608 S32: -0.2765 S33: -0.0076 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 60:180) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7682 -6.7312 -18.0735 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.2046 REMARK 3 T33: 0.1505 T12: -0.0095 REMARK 3 T13: -0.0452 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.2534 L22: 2.0157 REMARK 3 L33: 1.4952 L12: 0.1296 REMARK 3 L13: 0.2505 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: 0.2448 S13: 0.1045 REMARK 3 S21: -0.4456 S22: 0.0935 S23: 0.1659 REMARK 3 S31: -0.1186 S32: 0.0339 S33: -0.0279 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 181:251) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8555 -2.8840 -1.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1705 REMARK 3 T33: 0.2106 T12: 0.0308 REMARK 3 T13: -0.0099 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.6002 L22: 1.8516 REMARK 3 L33: 2.9649 L12: -0.9643 REMARK 3 L13: 1.0267 L23: 0.2474 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0025 S13: 0.1619 REMARK 3 S21: 0.0125 S22: 0.0689 S23: 0.4592 REMARK 3 S31: -0.2637 S32: -0.4440 S33: -0.0104 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 2:39) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6067 -43.5697 -15.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.3787 T22: 0.1381 REMARK 3 T33: 0.1648 T12: -0.0377 REMARK 3 T13: -0.0890 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.8669 L22: 4.8549 REMARK 3 L33: 5.8279 L12: -0.5054 REMARK 3 L13: 0.0167 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: 0.1619 S13: -0.2660 REMARK 3 S21: 0.1517 S22: 0.0670 S23: -0.3292 REMARK 3 S31: 0.0479 S32: 0.3927 S33: -0.0604 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 40:77) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1615 -41.7325 -26.3615 REMARK 3 T TENSOR REMARK 3 T11: 0.4884 T22: 0.2670 REMARK 3 T33: 0.2638 T12: -0.0115 REMARK 3 T13: -0.0650 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 5.2150 L22: 3.7419 REMARK 3 L33: 3.1670 L12: -0.9827 REMARK 3 L13: 1.3220 L23: -0.4404 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.5982 S13: -0.4394 REMARK 3 S21: -0.7343 S22: 0.0274 S23: -0.2112 REMARK 3 S31: 0.4170 S32: 0.2117 S33: -0.0900 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 78:216) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3316 -26.7342 -15.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.1791 REMARK 3 T33: 0.1130 T12: -0.0027 REMARK 3 T13: -0.0075 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.6139 L22: 2.0003 REMARK 3 L33: 1.8627 L12: 0.1010 REMARK 3 L13: 0.5043 L23: -0.0345 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.1300 S13: 0.0396 REMARK 3 S21: -0.3731 S22: 0.0566 S23: -0.0474 REMARK 3 S31: 0.0169 S32: 0.1631 S33: -0.0283 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 217:251) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7568 -32.3303 -3.3831 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.0953 REMARK 3 T33: 0.0851 T12: 0.0121 REMARK 3 T13: -0.0647 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.3835 L22: 2.9187 REMARK 3 L33: 3.2456 L12: -0.1362 REMARK 3 L13: -1.4397 L23: -0.5668 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.1228 S13: -0.2582 REMARK 3 S21: -0.2374 S22: -0.0039 S23: -0.0626 REMARK 3 S31: 0.3236 S32: 0.1258 S33: -0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 100 MM TRIS, AND 30% PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.53700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.65050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.53700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.65050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 187 REMARK 465 THR A 188 REMARK 465 LYS A 189 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 ALA A 192 REMARK 465 GLY A 193 REMARK 465 ILE A 194 REMARK 465 THR A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 GLU A 198 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 MSE B 0 REMARK 465 VAL B 1 REMARK 465 PRO B 186 REMARK 465 THR B 187 REMARK 465 LYS B 188 REMARK 465 GLY B 189 REMARK 465 VAL B 190 REMARK 465 ALA B 191 REMARK 465 GLY B 192 REMARK 465 ILE B 193 REMARK 465 THR B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 GLU B 197 REMARK 465 ALA B 252 REMARK 465 ALA B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 175 CA - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 VAL B 175 O - C - N ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 113 -61.58 -125.36 REMARK 500 SER A 137 -142.90 -91.37 REMARK 500 ASN B 87 63.64 -115.70 REMARK 500 GLU B 94 148.28 -172.74 REMARK 500 THR B 112 -59.84 -126.56 REMARK 500 SER B 136 -132.68 -90.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL B 175 11.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012068 RELATED DB: TARGETTRACK DBREF 3VC7 A 3 254 UNP Q92N93 Q92N93_RHIME 2 253 DBREF 3VC7 B 2 253 UNP Q92N93 Q92N93_RHIME 2 253 SEQADV 3VC7 MSE A 1 UNP Q92N93 EXPRESSION TAG SEQADV 3VC7 VAL A 2 UNP Q92N93 EXPRESSION TAG SEQADV 3VC7 MSE B 0 UNP Q92N93 EXPRESSION TAG SEQADV 3VC7 VAL B 1 UNP Q92N93 EXPRESSION TAG SEQRES 1 A 254 MSE VAL GLY ASN TYR GLN GLY LYS LYS ALA ILE VAL ILE SEQRES 2 A 254 GLY GLY THR HIS GLY MSE GLY LEU ALA THR VAL ARG ARG SEQRES 3 A 254 LEU VAL GLU GLY GLY ALA GLU VAL LEU LEU THR GLY ARG SEQRES 4 A 254 ASN GLU SER ASN ILE ALA ARG ILE ARG GLU GLU PHE GLY SEQRES 5 A 254 PRO ARG VAL HIS ALA LEU ARG SER ASP ILE ALA ASP LEU SEQRES 6 A 254 ASN GLU ILE ALA VAL LEU GLY ALA ALA ALA GLY GLN THR SEQRES 7 A 254 LEU GLY ALA ILE ASP LEU LEU HIS ILE ASN ALA GLY VAL SEQRES 8 A 254 SER GLU LEU GLU PRO PHE ASP GLN VAL SER GLU ALA SER SEQRES 9 A 254 TYR ASP ARG GLN PHE ALA VAL ASN THR LYS GLY ALA PHE SEQRES 10 A 254 PHE THR VAL GLN ARG LEU THR PRO LEU ILE ARG GLU GLY SEQRES 11 A 254 GLY SER ILE VAL PHE THR SER SER VAL ALA ASP GLU GLY SEQRES 12 A 254 GLY HIS PRO GLY MSE SER VAL TYR SER ALA SER LYS ALA SEQRES 13 A 254 ALA LEU VAL SER PHE ALA SER VAL LEU ALA ALA GLU LEU SEQRES 14 A 254 LEU PRO ARG GLY ILE ARG VAL ASN SER VAL SER PRO GLY SEQRES 15 A 254 PHE ILE ASP THR PRO THR LYS GLY VAL ALA GLY ILE THR SEQRES 16 A 254 GLU ALA GLU ARG ALA GLU PHE LYS THR LEU GLY ASP ASN SEQRES 17 A 254 ILE THR PRO MSE LYS ARG ASN GLY THR ALA ASP GLU VAL SEQRES 18 A 254 ALA ARG ALA VAL LEU PHE LEU ALA PHE GLU ALA THR PHE SEQRES 19 A 254 THR THR GLY ALA LYS LEU ALA VAL ASP GLY GLY LEU GLY SEQRES 20 A 254 GLN LYS LEU SER THR ALA ALA SEQRES 1 B 254 MSE VAL GLY ASN TYR GLN GLY LYS LYS ALA ILE VAL ILE SEQRES 2 B 254 GLY GLY THR HIS GLY MSE GLY LEU ALA THR VAL ARG ARG SEQRES 3 B 254 LEU VAL GLU GLY GLY ALA GLU VAL LEU LEU THR GLY ARG SEQRES 4 B 254 ASN GLU SER ASN ILE ALA ARG ILE ARG GLU GLU PHE GLY SEQRES 5 B 254 PRO ARG VAL HIS ALA LEU ARG SER ASP ILE ALA ASP LEU SEQRES 6 B 254 ASN GLU ILE ALA VAL LEU GLY ALA ALA ALA GLY GLN THR SEQRES 7 B 254 LEU GLY ALA ILE ASP LEU LEU HIS ILE ASN ALA GLY VAL SEQRES 8 B 254 SER GLU LEU GLU PRO PHE ASP GLN VAL SER GLU ALA SER SEQRES 9 B 254 TYR ASP ARG GLN PHE ALA VAL ASN THR LYS GLY ALA PHE SEQRES 10 B 254 PHE THR VAL GLN ARG LEU THR PRO LEU ILE ARG GLU GLY SEQRES 11 B 254 GLY SER ILE VAL PHE THR SER SER VAL ALA ASP GLU GLY SEQRES 12 B 254 GLY HIS PRO GLY MSE SER VAL TYR SER ALA SER LYS ALA SEQRES 13 B 254 ALA LEU VAL SER PHE ALA SER VAL LEU ALA ALA GLU LEU SEQRES 14 B 254 LEU PRO ARG GLY ILE ARG VAL ASN SER VAL SER PRO GLY SEQRES 15 B 254 PHE ILE ASP THR PRO THR LYS GLY VAL ALA GLY ILE THR SEQRES 16 B 254 GLU ALA GLU ARG ALA GLU PHE LYS THR LEU GLY ASP ASN SEQRES 17 B 254 ILE THR PRO MSE LYS ARG ASN GLY THR ALA ASP GLU VAL SEQRES 18 B 254 ALA ARG ALA VAL LEU PHE LEU ALA PHE GLU ALA THR PHE SEQRES 19 B 254 THR THR GLY ALA LYS LEU ALA VAL ASP GLY GLY LEU GLY SEQRES 20 B 254 GLN LYS LEU SER THR ALA ALA MODRES 3VC7 MSE A 19 MET SELENOMETHIONINE MODRES 3VC7 MSE A 148 MET SELENOMETHIONINE MODRES 3VC7 MSE A 212 MET SELENOMETHIONINE MODRES 3VC7 MSE B 18 MET SELENOMETHIONINE MODRES 3VC7 MSE B 147 MET SELENOMETHIONINE MODRES 3VC7 MSE B 211 MET SELENOMETHIONINE HET MSE A 19 8 HET MSE A 148 8 HET MSE A 212 8 HET MSE B 18 8 HET MSE B 147 8 HET MSE B 211 8 HET GOL A 301 6 HET GOL B 301 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *109(H2 O) HELIX 1 1 HIS A 17 GLY A 30 1 14 HELIX 2 2 ASN A 40 GLY A 52 1 13 HELIX 3 3 ASP A 64 LEU A 79 1 16 HELIX 4 4 PRO A 96 VAL A 100 5 5 HELIX 5 5 SER A 101 THR A 113 1 13 HELIX 6 6 THR A 113 THR A 124 1 12 HELIX 7 7 SER A 138 GLU A 142 5 5 HELIX 8 8 MSE A 148 LEU A 169 1 22 HELIX 9 9 LEU A 170 GLY A 173 5 4 HELIX 10 10 ALA A 200 THR A 210 1 11 HELIX 11 11 THR A 217 GLU A 231 1 15 HELIX 12 12 HIS B 16 GLY B 29 1 14 HELIX 13 13 ASN B 39 GLY B 51 1 13 HELIX 14 14 ASP B 63 LEU B 78 1 16 HELIX 15 15 PRO B 95 VAL B 99 5 5 HELIX 16 16 SER B 100 THR B 112 1 13 HELIX 17 17 THR B 112 THR B 123 1 12 HELIX 18 18 SER B 137 GLU B 141 5 5 HELIX 19 19 MSE B 147 LEU B 168 1 22 HELIX 20 20 LEU B 169 GLY B 172 5 4 HELIX 21 21 ALA B 199 THR B 209 1 11 HELIX 22 22 THR B 216 GLU B 230 1 15 SHEET 1 A 7 VAL A 55 ARG A 59 0 SHEET 2 A 7 GLU A 33 GLY A 38 1 N VAL A 34 O HIS A 56 SHEET 3 A 7 LYS A 9 ILE A 13 1 N ALA A 10 O GLU A 33 SHEET 4 A 7 ILE A 82 ILE A 87 1 O ASP A 83 N LYS A 9 SHEET 5 A 7 ILE A 127 THR A 136 1 O ARG A 128 N ILE A 82 SHEET 6 A 7 ARG A 175 PRO A 181 1 O ARG A 175 N ILE A 133 SHEET 7 A 7 LYS A 239 VAL A 242 1 O LEU A 240 N SER A 180 SHEET 1 B 7 VAL B 54 ARG B 58 0 SHEET 2 B 7 GLU B 32 GLY B 37 1 N VAL B 33 O HIS B 55 SHEET 3 B 7 LYS B 8 ILE B 12 1 N ALA B 9 O GLU B 32 SHEET 4 B 7 ILE B 81 ILE B 86 1 O HIS B 85 N ILE B 10 SHEET 5 B 7 ILE B 126 THR B 135 1 O SER B 131 N ASP B 82 SHEET 6 B 7 ARG B 174 PRO B 180 1 O VAL B 178 N PHE B 134 SHEET 7 B 7 ALA B 237 VAL B 241 1 O LEU B 239 N SER B 179 LINK C GLY A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N GLY A 20 1555 1555 1.33 LINK C GLY A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N SER A 149 1555 1555 1.33 LINK C PRO A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N LYS A 213 1555 1555 1.33 LINK C GLY B 17 N MSE B 18 1555 1555 1.33 LINK C MSE B 18 N GLY B 19 1555 1555 1.33 LINK C GLY B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N SER B 148 1555 1555 1.33 LINK C PRO B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N LYS B 212 1555 1555 1.33 CISPEP 1 GLY B 2 ASN B 3 0 -2.97 SITE 1 AC1 4 SER A 138 VAL A 139 MSE A 148 PHE A 183 SITE 1 AC2 1 PRO B 145 CRYST1 59.074 119.301 64.128 90.00 110.09 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016928 0.000000 0.006190 0.00000 SCALE2 0.000000 0.008382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016604 0.00000