data_3VCF # _entry.id 3VCF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VCF RCSB RCSB069869 WWPDB D_1000069869 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4DKS _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VCF _pdbx_database_status.recvd_initial_deposition_date 2012-01-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ouyang, S.' 1 'Liang, W.' 2 'Huang, L.' 3 'Liu, Z.-J.' 4 # _citation.id primary _citation.title 'Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 659 _citation.page_last 670 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country US _citation.journal_id_ISSN 1399-0047 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22683788 _citation.pdbx_database_id_DOI 10.1107/S0907444912007202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhan, Z.' 1 ? primary 'Ouyang, S.' 2 ? primary 'Liang, W.' 3 ? primary 'Zhang, Z.' 4 ? primary 'Liu, Z.J.' 5 ? primary 'Huang, L.' 6 ? # _cell.entry_id 3VCF _cell.length_a 89.051 _cell.length_b 89.051 _cell.length_c 147.705 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VCF _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable integrase' 19253.510 2 ? ? 'C-terminal domain (residues 174-335)' ? 2 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHIT PLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWL KGV ; _entity_poly.pdbx_seq_one_letter_code_can ;MADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHIT PLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWL KGV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 ILE n 1 5 TYR n 1 6 ILE n 1 7 PRO n 1 8 THR n 1 9 LEU n 1 10 GLU n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 ARG n 1 15 THR n 1 16 LEU n 1 17 GLN n 1 18 LEU n 1 19 ALA n 1 20 LYS n 1 21 ASP n 1 22 TYR n 1 23 SER n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 TYR n 1 28 PHE n 1 29 ILE n 1 30 TYR n 1 31 ARG n 1 32 ILE n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 SER n 1 37 GLY n 1 38 VAL n 1 39 ARG n 1 40 LEU n 1 41 SER n 1 42 GLU n 1 43 ILE n 1 44 LEU n 1 45 LYS n 1 46 VAL n 1 47 LEU n 1 48 LYS n 1 49 GLU n 1 50 PRO n 1 51 GLU n 1 52 ARG n 1 53 ASP n 1 54 ILE n 1 55 CYS n 1 56 GLY n 1 57 ASN n 1 58 ASP n 1 59 VAL n 1 60 CYS n 1 61 TYR n 1 62 TYR n 1 63 PRO n 1 64 LEU n 1 65 SER n 1 66 TRP n 1 67 THR n 1 68 ARG n 1 69 GLY n 1 70 TYR n 1 71 LYS n 1 72 GLY n 1 73 VAL n 1 74 PHE n 1 75 TYR n 1 76 VAL n 1 77 PHE n 1 78 HIS n 1 79 ILE n 1 80 THR n 1 81 PRO n 1 82 LEU n 1 83 LYS n 1 84 ARG n 1 85 VAL n 1 86 GLU n 1 87 VAL n 1 88 THR n 1 89 LYS n 1 90 TRP n 1 91 ALA n 1 92 ILE n 1 93 ALA n 1 94 ASP n 1 95 PHE n 1 96 GLU n 1 97 ARG n 1 98 ARG n 1 99 HIS n 1 100 LYS n 1 101 ASP n 1 102 ALA n 1 103 ILE n 1 104 ALA n 1 105 ILE n 1 106 LYS n 1 107 TYR n 1 108 PHE n 1 109 ARG n 1 110 LYS n 1 111 PHE n 1 112 VAL n 1 113 ALA n 1 114 SER n 1 115 LYS n 1 116 MET n 1 117 ALA n 1 118 GLU n 1 119 LEU n 1 120 SER n 1 121 VAL n 1 122 PRO n 1 123 LEU n 1 124 ASP n 1 125 ILE n 1 126 ILE n 1 127 ASP n 1 128 PHE n 1 129 ILE n 1 130 GLN n 1 131 GLY n 1 132 ARG n 1 133 LYS n 1 134 PRO n 1 135 THR n 1 136 ARG n 1 137 VAL n 1 138 LEU n 1 139 THR n 1 140 GLN n 1 141 HIS n 1 142 TYR n 1 143 VAL n 1 144 SER n 1 145 LEU n 1 146 PHE n 1 147 GLY n 1 148 ILE n 1 149 ALA n 1 150 LYS n 1 151 GLU n 1 152 GLN n 1 153 TYR n 1 154 LYS n 1 155 LYS n 1 156 TYR n 1 157 ALA n 1 158 GLU n 1 159 TRP n 1 160 LEU n 1 161 LYS n 1 162 GLY n 1 163 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene d335 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 244589 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET30a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code INTG_SSV1 _struct_ref.pdbx_db_accession P20214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITP LKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLK GV ; _struct_ref.pdbx_align_begin 174 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VCF A 2 ? 163 ? P20214 174 ? 335 ? 174 335 2 1 3VCF B 2 ? 163 ? P20214 174 ? 335 ? 174 335 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VCF MET A 1 ? UNP P20214 ? ? 'expression tag' 173 1 2 3VCF MET B 1 ? UNP P20214 ? ? 'expression tag' 173 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VCF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.80 _exptl_crystal.density_percent_sol 67.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.2 _exptl_crystal_grow.pdbx_details '0.056M NaH2PO4, 1.35M K2HPO4, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-02-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3VCF _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 34.110 _reflns.d_resolution_high 2.700 _reflns.number_obs 16941 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 31.450 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.700 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VCF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 34.1100 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_number_reflns_obs 16941 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1892 _refine.ls_R_factor_R_work 0.1866 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2378 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0500 _refine.ls_number_reflns_R_free 856 _refine.ls_number_reflns_R_work 16085 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.1218 _refine.solvent_model_param_bsol 26.1720 _refine.solvent_model_param_ksol 0.3620 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.8669 _refine.aniso_B[2][2] 0.8669 _refine.aniso_B[3][3] -1.7339 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8515 _refine.B_iso_max 93.560 _refine.B_iso_min 7.380 _refine.pdbx_overall_phase_error 20.9900 _refine.occupancy_max 1.000 _refine.occupancy_min 0.440 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2561 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 2681 _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 34.1100 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 2638 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3556 1.003 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 386 0.071 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 435 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 990 15.844 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.7004 2.8695 6 100.0000 2607 . 0.2002 0.2303 . 140 . 2747 . 'X-RAY DIFFRACTION' . 2.8695 3.0909 6 100.0000 2622 . 0.2132 0.3260 . 146 . 2768 . 'X-RAY DIFFRACTION' . 3.0909 3.4017 6 100.0000 2626 . 0.2172 0.2614 . 150 . 2776 . 'X-RAY DIFFRACTION' . 3.4017 3.8934 6 100.0000 2655 . 0.1746 0.2238 . 145 . 2800 . 'X-RAY DIFFRACTION' . 3.8934 4.9029 6 100.0000 2708 . 0.1492 0.1866 . 141 . 2849 . 'X-RAY DIFFRACTION' . 4.9029 34.1127 6 100.0000 2867 . 0.1986 0.2449 . 134 . 3001 . 'X-RAY DIFFRACTION' . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 given ? 0.128838 -0.737981 -0.662408 -0.665979 0.430536 -0.609189 0.734761 0.519637 -0.436010 45.26682 63.46315 -19.57064 # _struct.entry_id 3VCF _struct.title 'SSV1 integrase C-terminal catalytic domain (174-335aa)' _struct.pdbx_descriptor 'Probable integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VCF _struct_keywords.pdbx_keywords RECOMBINATION _struct_keywords.text 'catalyzes site-specific integration, RECOMBINATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? ASP A 21 ? THR A 180 ASP A 193 1 ? 14 HELX_P HELX_P2 2 SER A 23 ? GLY A 37 ? SER A 195 GLY A 209 1 ? 15 HELX_P HELX_P3 3 ARG A 39 ? GLU A 49 ? ARG A 211 GLU A 221 1 ? 11 HELX_P HELX_P4 4 PRO A 50 ? ASP A 53 ? PRO A 222 ASP A 225 5 ? 4 HELX_P HELX_P5 5 THR A 88 ? ARG A 98 ? THR A 260 ARG A 270 1 ? 11 HELX_P HELX_P6 6 ILE A 105 ? LEU A 119 ? ILE A 277 LEU A 291 1 ? 15 HELX_P HELX_P7 7 PRO A 122 ? GLN A 130 ? PRO A 294 GLN A 302 1 ? 9 HELX_P HELX_P8 8 SER A 144 ? VAL A 163 ? SER A 316 VAL A 335 1 ? 20 HELX_P HELX_P9 9 THR B 8 ? SER B 23 ? THR B 180 SER B 195 1 ? 16 HELX_P HELX_P10 10 SER B 23 ? GLY B 37 ? SER B 195 GLY B 209 1 ? 15 HELX_P HELX_P11 11 ARG B 39 ? GLU B 49 ? ARG B 211 GLU B 221 1 ? 11 HELX_P HELX_P12 12 PRO B 50 ? ASP B 53 ? PRO B 222 ASP B 225 5 ? 4 HELX_P HELX_P13 13 THR B 88 ? ARG B 98 ? THR B 260 ARG B 270 1 ? 11 HELX_P HELX_P14 14 ALA B 104 ? LEU B 119 ? ALA B 276 LEU B 291 1 ? 16 HELX_P HELX_P15 15 PRO B 122 ? GLN B 130 ? PRO B 294 GLN B 302 1 ? 9 HELX_P HELX_P16 16 LEU B 145 ? LYS B 161 ? LEU B 317 LYS B 333 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 60 SG ? ? A CYS 227 A CYS 232 1_555 ? ? ? ? ? ? ? 2.058 ? disulf2 disulf ? ? B CYS 55 SG ? ? ? 1_555 B CYS 60 SG ? ? B CYS 227 B CYS 232 1_555 ? ? ? ? ? ? ? 2.066 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 143 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 315 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 144 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 316 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -27.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 54 ? GLY A 56 ? ILE A 226 GLY A 228 A 2 VAL A 59 ? SER A 65 ? VAL A 231 SER A 237 A 3 VAL A 73 ? HIS A 78 ? VAL A 245 HIS A 250 B 1 ILE B 54 ? GLY B 56 ? ILE B 226 GLY B 228 B 2 VAL B 59 ? LEU B 64 ? VAL B 231 LEU B 236 B 3 PHE B 74 ? HIS B 78 ? PHE B 246 HIS B 250 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 56 ? N GLY A 228 O VAL A 59 ? O VAL A 231 A 2 3 N CYS A 60 ? N CYS A 232 O HIS A 78 ? O HIS A 250 B 1 2 N ILE B 54 ? N ILE B 226 O TYR B 61 ? O TYR B 233 B 2 3 N LEU B 64 ? N LEU B 236 O PHE B 74 ? O PHE B 246 # _database_PDB_matrix.entry_id 3VCF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VCF _atom_sites.fract_transf_matrix[1][1] 0.011230 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011230 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 173 ? ? ? A . n A 1 2 ALA 2 174 ? ? ? A . n A 1 3 ASP 3 175 ? ? ? A . n A 1 4 ILE 4 176 176 ILE ILE A . n A 1 5 TYR 5 177 177 TYR TYR A . n A 1 6 ILE 6 178 178 ILE ILE A . n A 1 7 PRO 7 179 179 PRO PRO A . n A 1 8 THR 8 180 180 THR THR A . n A 1 9 LEU 9 181 181 LEU LEU A . n A 1 10 GLU 10 182 182 GLU GLU A . n A 1 11 GLU 11 183 183 GLU GLU A . n A 1 12 ILE 12 184 184 ILE ILE A . n A 1 13 LYS 13 185 185 LYS LYS A . n A 1 14 ARG 14 186 186 ARG ARG A . n A 1 15 THR 15 187 187 THR THR A . n A 1 16 LEU 16 188 188 LEU LEU A . n A 1 17 GLN 17 189 189 GLN GLN A . n A 1 18 LEU 18 190 190 LEU LEU A . n A 1 19 ALA 19 191 191 ALA ALA A . n A 1 20 LYS 20 192 192 LYS LYS A . n A 1 21 ASP 21 193 193 ASP ASP A . n A 1 22 TYR 22 194 194 TYR TYR A . n A 1 23 SER 23 195 195 SER SER A . n A 1 24 GLU 24 196 196 GLU GLU A . n A 1 25 ASN 25 197 197 ASN ASN A . n A 1 26 VAL 26 198 198 VAL VAL A . n A 1 27 TYR 27 199 199 TYR TYR A . n A 1 28 PHE 28 200 200 PHE PHE A . n A 1 29 ILE 29 201 201 ILE ILE A . n A 1 30 TYR 30 202 202 TYR TYR A . n A 1 31 ARG 31 203 203 ARG ARG A . n A 1 32 ILE 32 204 204 ILE ILE A . n A 1 33 ALA 33 205 205 ALA ALA A . n A 1 34 LEU 34 206 206 LEU LEU A . n A 1 35 GLU 35 207 207 GLU GLU A . n A 1 36 SER 36 208 208 SER SER A . n A 1 37 GLY 37 209 209 GLY GLY A . n A 1 38 VAL 38 210 210 VAL VAL A . n A 1 39 ARG 39 211 211 ARG ARG A . n A 1 40 LEU 40 212 212 LEU LEU A . n A 1 41 SER 41 213 213 SER SER A . n A 1 42 GLU 42 214 214 GLU GLU A . n A 1 43 ILE 43 215 215 ILE ILE A . n A 1 44 LEU 44 216 216 LEU LEU A . n A 1 45 LYS 45 217 217 LYS LYS A . n A 1 46 VAL 46 218 218 VAL VAL A . n A 1 47 LEU 47 219 219 LEU LEU A . n A 1 48 LYS 48 220 220 LYS LYS A . n A 1 49 GLU 49 221 221 GLU GLU A . n A 1 50 PRO 50 222 222 PRO PRO A . n A 1 51 GLU 51 223 223 GLU GLU A . n A 1 52 ARG 52 224 224 ARG ARG A . n A 1 53 ASP 53 225 225 ASP ASP A . n A 1 54 ILE 54 226 226 ILE ILE A . n A 1 55 CYS 55 227 227 CYS CYS A . n A 1 56 GLY 56 228 228 GLY GLY A . n A 1 57 ASN 57 229 229 ASN ASN A . n A 1 58 ASP 58 230 230 ASP ASP A . n A 1 59 VAL 59 231 231 VAL VAL A . n A 1 60 CYS 60 232 232 CYS CYS A . n A 1 61 TYR 61 233 233 TYR TYR A . n A 1 62 TYR 62 234 234 TYR TYR A . n A 1 63 PRO 63 235 235 PRO PRO A . n A 1 64 LEU 64 236 236 LEU LEU A . n A 1 65 SER 65 237 237 SER SER A . n A 1 66 TRP 66 238 238 TRP TRP A . n A 1 67 THR 67 239 239 THR THR A . n A 1 68 ARG 68 240 240 ARG ARG A . n A 1 69 GLY 69 241 241 GLY GLY A . n A 1 70 TYR 70 242 242 TYR TYR A . n A 1 71 LYS 71 243 243 LYS LYS A . n A 1 72 GLY 72 244 244 GLY GLY A . n A 1 73 VAL 73 245 245 VAL VAL A . n A 1 74 PHE 74 246 246 PHE PHE A . n A 1 75 TYR 75 247 247 TYR TYR A . n A 1 76 VAL 76 248 248 VAL VAL A . n A 1 77 PHE 77 249 249 PHE PHE A . n A 1 78 HIS 78 250 250 HIS HIS A . n A 1 79 ILE 79 251 251 ILE ILE A . n A 1 80 THR 80 252 252 THR THR A . n A 1 81 PRO 81 253 253 PRO PRO A . n A 1 82 LEU 82 254 254 LEU LEU A . n A 1 83 LYS 83 255 255 LYS LYS A . n A 1 84 ARG 84 256 256 ARG ARG A . n A 1 85 VAL 85 257 257 VAL VAL A . n A 1 86 GLU 86 258 258 GLU GLU A . n A 1 87 VAL 87 259 259 VAL VAL A . n A 1 88 THR 88 260 260 THR THR A . n A 1 89 LYS 89 261 261 LYS LYS A . n A 1 90 TRP 90 262 262 TRP TRP A . n A 1 91 ALA 91 263 263 ALA ALA A . n A 1 92 ILE 92 264 264 ILE ILE A . n A 1 93 ALA 93 265 265 ALA ALA A . n A 1 94 ASP 94 266 266 ASP ASP A . n A 1 95 PHE 95 267 267 PHE PHE A . n A 1 96 GLU 96 268 268 GLU GLU A . n A 1 97 ARG 97 269 269 ARG ARG A . n A 1 98 ARG 98 270 270 ARG ARG A . n A 1 99 HIS 99 271 271 HIS HIS A . n A 1 100 LYS 100 272 272 LYS LYS A . n A 1 101 ASP 101 273 273 ASP ASP A . n A 1 102 ALA 102 274 274 ALA ALA A . n A 1 103 ILE 103 275 275 ILE ILE A . n A 1 104 ALA 104 276 276 ALA ALA A . n A 1 105 ILE 105 277 277 ILE ILE A . n A 1 106 LYS 106 278 278 LYS LYS A . n A 1 107 TYR 107 279 279 TYR TYR A . n A 1 108 PHE 108 280 280 PHE PHE A . n A 1 109 ARG 109 281 281 ARG ARG A . n A 1 110 LYS 110 282 282 LYS LYS A . n A 1 111 PHE 111 283 283 PHE PHE A . n A 1 112 VAL 112 284 284 VAL VAL A . n A 1 113 ALA 113 285 285 ALA ALA A . n A 1 114 SER 114 286 286 SER SER A . n A 1 115 LYS 115 287 287 LYS LYS A . n A 1 116 MET 116 288 288 MET MET A . n A 1 117 ALA 117 289 289 ALA ALA A . n A 1 118 GLU 118 290 290 GLU GLU A . n A 1 119 LEU 119 291 291 LEU LEU A . n A 1 120 SER 120 292 292 SER SER A . n A 1 121 VAL 121 293 293 VAL VAL A . n A 1 122 PRO 122 294 294 PRO PRO A . n A 1 123 LEU 123 295 295 LEU LEU A . n A 1 124 ASP 124 296 296 ASP ASP A . n A 1 125 ILE 125 297 297 ILE ILE A . n A 1 126 ILE 126 298 298 ILE ILE A . n A 1 127 ASP 127 299 299 ASP ASP A . n A 1 128 PHE 128 300 300 PHE PHE A . n A 1 129 ILE 129 301 301 ILE ILE A . n A 1 130 GLN 130 302 302 GLN GLN A . n A 1 131 GLY 131 303 303 GLY GLY A . n A 1 132 ARG 132 304 304 ARG ARG A . n A 1 133 LYS 133 305 305 LYS LYS A . n A 1 134 PRO 134 306 306 PRO PRO A . n A 1 135 THR 135 307 307 THR THR A . n A 1 136 ARG 136 308 308 ARG ARG A . n A 1 137 VAL 137 309 309 VAL VAL A . n A 1 138 LEU 138 310 310 LEU LEU A . n A 1 139 THR 139 311 311 THR THR A . n A 1 140 GLN 140 312 312 GLN GLN A . n A 1 141 HIS 141 313 313 HIS HIS A . n A 1 142 TYR 142 314 314 TYR TYR A . n A 1 143 VAL 143 315 315 VAL VAL A . n A 1 144 SER 144 316 316 SER SER A . n A 1 145 LEU 145 317 317 LEU LEU A . n A 1 146 PHE 146 318 318 PHE PHE A . n A 1 147 GLY 147 319 319 GLY GLY A . n A 1 148 ILE 148 320 320 ILE ILE A . n A 1 149 ALA 149 321 321 ALA ALA A . n A 1 150 LYS 150 322 322 LYS LYS A . n A 1 151 GLU 151 323 323 GLU GLU A . n A 1 152 GLN 152 324 324 GLN GLN A . n A 1 153 TYR 153 325 325 TYR TYR A . n A 1 154 LYS 154 326 326 LYS LYS A . n A 1 155 LYS 155 327 327 LYS LYS A . n A 1 156 TYR 156 328 328 TYR TYR A . n A 1 157 ALA 157 329 329 ALA ALA A . n A 1 158 GLU 158 330 330 GLU GLU A . n A 1 159 TRP 159 331 331 TRP TRP A . n A 1 160 LEU 160 332 332 LEU LEU A . n A 1 161 LYS 161 333 333 LYS LYS A . n A 1 162 GLY 162 334 334 GLY GLY A . n A 1 163 VAL 163 335 335 VAL VAL A . n B 1 1 MET 1 173 ? ? ? B . n B 1 2 ALA 2 174 ? ? ? B . n B 1 3 ASP 3 175 ? ? ? B . n B 1 4 ILE 4 176 ? ? ? B . n B 1 5 TYR 5 177 177 TYR TYR B . n B 1 6 ILE 6 178 178 ILE ILE B . n B 1 7 PRO 7 179 179 PRO PRO B . n B 1 8 THR 8 180 180 THR THR B . n B 1 9 LEU 9 181 181 LEU LEU B . n B 1 10 GLU 10 182 182 GLU GLU B . n B 1 11 GLU 11 183 183 GLU GLU B . n B 1 12 ILE 12 184 184 ILE ILE B . n B 1 13 LYS 13 185 185 LYS LYS B . n B 1 14 ARG 14 186 186 ARG ARG B . n B 1 15 THR 15 187 187 THR THR B . n B 1 16 LEU 16 188 188 LEU LEU B . n B 1 17 GLN 17 189 189 GLN GLN B . n B 1 18 LEU 18 190 190 LEU LEU B . n B 1 19 ALA 19 191 191 ALA ALA B . n B 1 20 LYS 20 192 192 LYS LYS B . n B 1 21 ASP 21 193 193 ASP ASP B . n B 1 22 TYR 22 194 194 TYR TYR B . n B 1 23 SER 23 195 195 SER SER B . n B 1 24 GLU 24 196 196 GLU GLU B . n B 1 25 ASN 25 197 197 ASN ASN B . n B 1 26 VAL 26 198 198 VAL VAL B . n B 1 27 TYR 27 199 199 TYR TYR B . n B 1 28 PHE 28 200 200 PHE PHE B . n B 1 29 ILE 29 201 201 ILE ILE B . n B 1 30 TYR 30 202 202 TYR TYR B . n B 1 31 ARG 31 203 203 ARG ARG B . n B 1 32 ILE 32 204 204 ILE ILE B . n B 1 33 ALA 33 205 205 ALA ALA B . n B 1 34 LEU 34 206 206 LEU LEU B . n B 1 35 GLU 35 207 207 GLU GLU B . n B 1 36 SER 36 208 208 SER SER B . n B 1 37 GLY 37 209 209 GLY GLY B . n B 1 38 VAL 38 210 210 VAL VAL B . n B 1 39 ARG 39 211 211 ARG ARG B . n B 1 40 LEU 40 212 212 LEU LEU B . n B 1 41 SER 41 213 213 SER SER B . n B 1 42 GLU 42 214 214 GLU GLU B . n B 1 43 ILE 43 215 215 ILE ILE B . n B 1 44 LEU 44 216 216 LEU LEU B . n B 1 45 LYS 45 217 217 LYS LYS B . n B 1 46 VAL 46 218 218 VAL VAL B . n B 1 47 LEU 47 219 219 LEU LEU B . n B 1 48 LYS 48 220 220 LYS LYS B . n B 1 49 GLU 49 221 221 GLU GLU B . n B 1 50 PRO 50 222 222 PRO PRO B . n B 1 51 GLU 51 223 223 GLU GLU B . n B 1 52 ARG 52 224 224 ARG ARG B . n B 1 53 ASP 53 225 225 ASP ASP B . n B 1 54 ILE 54 226 226 ILE ILE B . n B 1 55 CYS 55 227 227 CYS CYS B . n B 1 56 GLY 56 228 228 GLY GLY B . n B 1 57 ASN 57 229 229 ASN ASN B . n B 1 58 ASP 58 230 230 ASP ASP B . n B 1 59 VAL 59 231 231 VAL VAL B . n B 1 60 CYS 60 232 232 CYS CYS B . n B 1 61 TYR 61 233 233 TYR TYR B . n B 1 62 TYR 62 234 234 TYR TYR B . n B 1 63 PRO 63 235 235 PRO PRO B . n B 1 64 LEU 64 236 236 LEU LEU B . n B 1 65 SER 65 237 237 SER SER B . n B 1 66 TRP 66 238 238 TRP TRP B . n B 1 67 THR 67 239 ? ? ? B . n B 1 68 ARG 68 240 ? ? ? B . n B 1 69 GLY 69 241 ? ? ? B . n B 1 70 TYR 70 242 ? ? ? B . n B 1 71 LYS 71 243 ? ? ? B . n B 1 72 GLY 72 244 244 GLY GLY B . n B 1 73 VAL 73 245 245 VAL VAL B . n B 1 74 PHE 74 246 246 PHE PHE B . n B 1 75 TYR 75 247 247 TYR TYR B . n B 1 76 VAL 76 248 248 VAL VAL B . n B 1 77 PHE 77 249 249 PHE PHE B . n B 1 78 HIS 78 250 250 HIS HIS B . n B 1 79 ILE 79 251 251 ILE ILE B . n B 1 80 THR 80 252 252 THR THR B . n B 1 81 PRO 81 253 253 PRO PRO B . n B 1 82 LEU 82 254 254 LEU LEU B . n B 1 83 LYS 83 255 255 LYS LYS B . n B 1 84 ARG 84 256 256 ARG ARG B . n B 1 85 VAL 85 257 257 VAL VAL B . n B 1 86 GLU 86 258 258 GLU GLU B . n B 1 87 VAL 87 259 259 VAL VAL B . n B 1 88 THR 88 260 260 THR THR B . n B 1 89 LYS 89 261 261 LYS LYS B . n B 1 90 TRP 90 262 262 TRP TRP B . n B 1 91 ALA 91 263 263 ALA ALA B . n B 1 92 ILE 92 264 264 ILE ILE B . n B 1 93 ALA 93 265 265 ALA ALA B . n B 1 94 ASP 94 266 266 ASP ASP B . n B 1 95 PHE 95 267 267 PHE PHE B . n B 1 96 GLU 96 268 268 GLU GLU B . n B 1 97 ARG 97 269 269 ARG ARG B . n B 1 98 ARG 98 270 270 ARG ARG B . n B 1 99 HIS 99 271 271 HIS HIS B . n B 1 100 LYS 100 272 272 LYS LYS B . n B 1 101 ASP 101 273 273 ASP ASP B . n B 1 102 ALA 102 274 274 ALA ALA B . n B 1 103 ILE 103 275 275 ILE ILE B . n B 1 104 ALA 104 276 276 ALA ALA B . n B 1 105 ILE 105 277 277 ILE ILE B . n B 1 106 LYS 106 278 278 LYS LYS B . n B 1 107 TYR 107 279 279 TYR TYR B . n B 1 108 PHE 108 280 280 PHE PHE B . n B 1 109 ARG 109 281 281 ARG ARG B . n B 1 110 LYS 110 282 282 LYS LYS B . n B 1 111 PHE 111 283 283 PHE PHE B . n B 1 112 VAL 112 284 284 VAL VAL B . n B 1 113 ALA 113 285 285 ALA ALA B . n B 1 114 SER 114 286 286 SER SER B . n B 1 115 LYS 115 287 287 LYS LYS B . n B 1 116 MET 116 288 288 MET MET B . n B 1 117 ALA 117 289 289 ALA ALA B . n B 1 118 GLU 118 290 290 GLU GLU B . n B 1 119 LEU 119 291 291 LEU LEU B . n B 1 120 SER 120 292 292 SER SER B . n B 1 121 VAL 121 293 293 VAL VAL B . n B 1 122 PRO 122 294 294 PRO PRO B . n B 1 123 LEU 123 295 295 LEU LEU B . n B 1 124 ASP 124 296 296 ASP ASP B . n B 1 125 ILE 125 297 297 ILE ILE B . n B 1 126 ILE 126 298 298 ILE ILE B . n B 1 127 ASP 127 299 299 ASP ASP B . n B 1 128 PHE 128 300 300 PHE PHE B . n B 1 129 ILE 129 301 301 ILE ILE B . n B 1 130 GLN 130 302 302 GLN GLN B . n B 1 131 GLY 131 303 303 GLY GLY B . n B 1 132 ARG 132 304 304 ARG ARG B . n B 1 133 LYS 133 305 305 LYS LYS B . n B 1 134 PRO 134 306 ? ? ? B . n B 1 135 THR 135 307 ? ? ? B . n B 1 136 ARG 136 308 ? ? ? B . n B 1 137 VAL 137 309 ? ? ? B . n B 1 138 LEU 138 310 ? ? ? B . n B 1 139 THR 139 311 ? ? ? B . n B 1 140 GLN 140 312 ? ? ? B . n B 1 141 HIS 141 313 ? ? ? B . n B 1 142 TYR 142 314 314 TYR TYR B . n B 1 143 VAL 143 315 315 VAL VAL B . n B 1 144 SER 144 316 316 SER SER B . n B 1 145 LEU 145 317 317 LEU LEU B . n B 1 146 PHE 146 318 318 PHE PHE B . n B 1 147 GLY 147 319 319 GLY GLY B . n B 1 148 ILE 148 320 320 ILE ILE B . n B 1 149 ALA 149 321 321 ALA ALA B . n B 1 150 LYS 150 322 322 LYS LYS B . n B 1 151 GLU 151 323 323 GLU GLU B . n B 1 152 GLN 152 324 324 GLN GLN B . n B 1 153 TYR 153 325 325 TYR TYR B . n B 1 154 LYS 154 326 326 LYS LYS B . n B 1 155 LYS 155 327 327 LYS LYS B . n B 1 156 TYR 156 328 328 TYR TYR B . n B 1 157 ALA 157 329 329 ALA ALA B . n B 1 158 GLU 158 330 330 GLU GLU B . n B 1 159 TRP 159 331 331 TRP TRP B . n B 1 160 LEU 160 332 332 LEU LEU B . n B 1 161 LYS 161 333 333 LYS LYS B . n B 1 162 GLY 162 334 334 GLY GLY B . n B 1 163 VAL 163 335 335 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 401 1 HOH HOH A . C 2 HOH 2 402 3 HOH HOH A . C 2 HOH 3 403 5 HOH HOH A . C 2 HOH 4 404 7 HOH HOH A . C 2 HOH 5 405 8 HOH HOH A . C 2 HOH 6 406 11 HOH HOH A . C 2 HOH 7 407 12 HOH HOH A . C 2 HOH 8 408 13 HOH HOH A . C 2 HOH 9 409 14 HOH HOH A . C 2 HOH 10 410 17 HOH HOH A . C 2 HOH 11 411 20 HOH HOH A . C 2 HOH 12 412 21 HOH HOH A . C 2 HOH 13 413 25 HOH HOH A . C 2 HOH 14 414 28 HOH HOH A . C 2 HOH 15 415 30 HOH HOH A . C 2 HOH 16 416 31 HOH HOH A . C 2 HOH 17 417 32 HOH HOH A . C 2 HOH 18 418 33 HOH HOH A . C 2 HOH 19 419 34 HOH HOH A . C 2 HOH 20 420 35 HOH HOH A . C 2 HOH 21 421 36 HOH HOH A . C 2 HOH 22 422 37 HOH HOH A . C 2 HOH 23 423 40 HOH HOH A . C 2 HOH 24 424 41 HOH HOH A . C 2 HOH 25 425 42 HOH HOH A . C 2 HOH 26 426 43 HOH HOH A . C 2 HOH 27 427 45 HOH HOH A . C 2 HOH 28 428 47 HOH HOH A . C 2 HOH 29 429 48 HOH HOH A . C 2 HOH 30 430 49 HOH HOH A . C 2 HOH 31 431 50 HOH HOH A . C 2 HOH 32 432 52 HOH HOH A . C 2 HOH 33 433 55 HOH HOH A . C 2 HOH 34 434 56 HOH HOH A . C 2 HOH 35 435 57 HOH HOH A . C 2 HOH 36 436 58 HOH HOH A . C 2 HOH 37 437 59 HOH HOH A . C 2 HOH 38 438 61 HOH HOH A . C 2 HOH 39 439 64 HOH HOH A . C 2 HOH 40 440 65 HOH HOH A . C 2 HOH 41 441 66 HOH HOH A . C 2 HOH 42 442 69 HOH HOH A . C 2 HOH 43 443 70 HOH HOH A . C 2 HOH 44 444 75 HOH HOH A . C 2 HOH 45 445 78 HOH HOH A . C 2 HOH 46 446 79 HOH HOH A . C 2 HOH 47 447 87 HOH HOH A . C 2 HOH 48 448 88 HOH HOH A . C 2 HOH 49 449 92 HOH HOH A . C 2 HOH 50 450 93 HOH HOH A . C 2 HOH 51 451 96 HOH HOH A . C 2 HOH 52 452 99 HOH HOH A . C 2 HOH 53 453 102 HOH HOH A . C 2 HOH 54 454 103 HOH HOH A . C 2 HOH 55 455 106 HOH HOH A . C 2 HOH 56 456 107 HOH HOH A . C 2 HOH 57 457 108 HOH HOH A . C 2 HOH 58 458 110 HOH HOH A . C 2 HOH 59 459 114 HOH HOH A . C 2 HOH 60 460 115 HOH HOH A . C 2 HOH 61 461 117 HOH HOH A . C 2 HOH 62 462 118 HOH HOH A . C 2 HOH 63 463 119 HOH HOH A . C 2 HOH 64 464 120 HOH HOH A . D 2 HOH 1 401 2 HOH HOH B . D 2 HOH 2 402 4 HOH HOH B . D 2 HOH 3 403 6 HOH HOH B . D 2 HOH 4 404 9 HOH HOH B . D 2 HOH 5 405 10 HOH HOH B . D 2 HOH 6 406 15 HOH HOH B . D 2 HOH 7 407 16 HOH HOH B . D 2 HOH 8 408 18 HOH HOH B . D 2 HOH 9 409 19 HOH HOH B . D 2 HOH 10 410 22 HOH HOH B . D 2 HOH 11 411 23 HOH HOH B . D 2 HOH 12 412 24 HOH HOH B . D 2 HOH 13 413 26 HOH HOH B . D 2 HOH 14 414 27 HOH HOH B . D 2 HOH 15 415 29 HOH HOH B . D 2 HOH 16 416 38 HOH HOH B . D 2 HOH 17 417 39 HOH HOH B . D 2 HOH 18 418 44 HOH HOH B . D 2 HOH 19 419 46 HOH HOH B . D 2 HOH 20 420 51 HOH HOH B . D 2 HOH 21 421 53 HOH HOH B . D 2 HOH 22 422 54 HOH HOH B . D 2 HOH 23 423 60 HOH HOH B . D 2 HOH 24 424 62 HOH HOH B . D 2 HOH 25 425 63 HOH HOH B . D 2 HOH 26 426 67 HOH HOH B . D 2 HOH 27 427 68 HOH HOH B . D 2 HOH 28 428 71 HOH HOH B . D 2 HOH 29 429 72 HOH HOH B . D 2 HOH 30 430 73 HOH HOH B . D 2 HOH 31 431 74 HOH HOH B . D 2 HOH 32 432 76 HOH HOH B . D 2 HOH 33 433 77 HOH HOH B . D 2 HOH 34 434 80 HOH HOH B . D 2 HOH 35 435 81 HOH HOH B . D 2 HOH 36 436 82 HOH HOH B . D 2 HOH 37 437 83 HOH HOH B . D 2 HOH 38 438 84 HOH HOH B . D 2 HOH 39 439 85 HOH HOH B . D 2 HOH 40 440 86 HOH HOH B . D 2 HOH 41 441 89 HOH HOH B . D 2 HOH 42 442 90 HOH HOH B . D 2 HOH 43 443 91 HOH HOH B . D 2 HOH 44 444 94 HOH HOH B . D 2 HOH 45 445 95 HOH HOH B . D 2 HOH 46 446 97 HOH HOH B . D 2 HOH 47 447 98 HOH HOH B . D 2 HOH 48 448 100 HOH HOH B . D 2 HOH 49 449 101 HOH HOH B . D 2 HOH 50 450 104 HOH HOH B . D 2 HOH 51 451 105 HOH HOH B . D 2 HOH 52 452 109 HOH HOH B . D 2 HOH 53 453 111 HOH HOH B . D 2 HOH 54 454 112 HOH HOH B . D 2 HOH 55 455 113 HOH HOH B . D 2 HOH 56 456 116 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 437 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' 7 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 PHENIX refinement 1.7.3_928 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B GLY 228 ? ? O B HOH 401 ? ? 2.10 2 1 O A GLY 228 ? ? O A HOH 424 ? ? 2.12 3 1 OD1 A ASP 273 ? ? O A HOH 406 ? ? 2.18 4 1 NZ A LYS 185 ? ? O A HOH 455 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 195 ? ? -176.01 125.44 2 1 ASN A 229 ? ? 75.05 -66.13 3 1 TYR B 194 ? ? -91.01 -61.36 4 1 ASN B 229 ? ? 77.77 -59.39 5 1 ALA B 274 ? ? -66.19 -179.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 173 ? A MET 1 2 1 Y 1 A ALA 174 ? A ALA 2 3 1 Y 1 A ASP 175 ? A ASP 3 4 1 Y 1 B MET 173 ? B MET 1 5 1 Y 1 B ALA 174 ? B ALA 2 6 1 Y 1 B ASP 175 ? B ASP 3 7 1 Y 1 B ILE 176 ? B ILE 4 8 1 Y 1 B THR 239 ? B THR 67 9 1 Y 1 B ARG 240 ? B ARG 68 10 1 Y 1 B GLY 241 ? B GLY 69 11 1 Y 1 B TYR 242 ? B TYR 70 12 1 Y 1 B LYS 243 ? B LYS 71 13 1 Y 1 B PRO 306 ? B PRO 134 14 1 Y 1 B THR 307 ? B THR 135 15 1 Y 1 B ARG 308 ? B ARG 136 16 1 Y 1 B VAL 309 ? B VAL 137 17 1 Y 1 B LEU 310 ? B LEU 138 18 1 Y 1 B THR 311 ? B THR 139 19 1 Y 1 B GLN 312 ? B GLN 140 20 1 Y 1 B HIS 313 ? B HIS 141 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #