data_3VCI # _entry.id 3VCI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VCI pdb_00003vci 10.2210/pdb3vci/pdb RCSB RCSB069872 ? ? WWPDB D_1000069872 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ALD . unspecified PDB 3V7V . unspecified PDB 3V82 . unspecified PDB 3V84 . unspecified PDB 3V87 . unspecified PDB 3V88 . unspecified PDB 3V8A . unspecified PDB 3VCE . unspecified PDB 3VCG . unspecified PDB 3VCH . unspecified PDB 3VCJ . unspecified PDB 3VCK . unspecified # _pdbx_database_status.entry_id 3VCI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Belmonte, L.' 1 'Pechkova, E.' 2 'Scudieri, D.' 3 'Nicolini, C.' 4 # _citation.id primary _citation.title 'Langmuir-blodgett nanotemplate and radiation resistance in protein crystals: state of the art.' _citation.journal_abbrev 'Crit Rev Eukaryot Gene Expr' _citation.journal_volume 22 _citation.page_first 219 _citation.page_last 232 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1045-4403 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23140163 _citation.pdbx_database_id_DOI 10.1615/CritRevEukarGeneExpr.v22.i3.50 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Belmonte, L.' 1 ? primary 'Pechkova, E.' 2 ? primary 'Tripathi, S.' 3 ? primary 'Scudieri, D.' 4 ? primary 'Nicolini, C.' 5 ? # _cell.entry_id 3VCI _cell.length_a 58.135 _cell.length_b 58.135 _cell.length_c 151.279 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VCI _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thaumatin I' 22228.043 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _entity_poly.pdbx_seq_one_letter_code_can ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 PHE n 1 4 GLU n 1 5 ILE n 1 6 VAL n 1 7 ASN n 1 8 ARG n 1 9 CYS n 1 10 SER n 1 11 TYR n 1 12 THR n 1 13 VAL n 1 14 TRP n 1 15 ALA n 1 16 ALA n 1 17 ALA n 1 18 SER n 1 19 LYS n 1 20 GLY n 1 21 ASP n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 ASP n 1 26 ALA n 1 27 GLY n 1 28 GLY n 1 29 ARG n 1 30 GLN n 1 31 LEU n 1 32 ASN n 1 33 SER n 1 34 GLY n 1 35 GLU n 1 36 SER n 1 37 TRP n 1 38 THR n 1 39 ILE n 1 40 ASN n 1 41 VAL n 1 42 GLU n 1 43 PRO n 1 44 GLY n 1 45 THR n 1 46 ASN n 1 47 GLY n 1 48 GLY n 1 49 LYS n 1 50 ILE n 1 51 TRP n 1 52 ALA n 1 53 ARG n 1 54 THR n 1 55 ASP n 1 56 CYS n 1 57 TYR n 1 58 PHE n 1 59 ASP n 1 60 ASP n 1 61 SER n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 ILE n 1 66 CYS n 1 67 LYS n 1 68 THR n 1 69 GLY n 1 70 ASP n 1 71 CYS n 1 72 GLY n 1 73 GLY n 1 74 LEU n 1 75 LEU n 1 76 ARG n 1 77 CYS n 1 78 LYS n 1 79 ARG n 1 80 PHE n 1 81 GLY n 1 82 ARG n 1 83 PRO n 1 84 PRO n 1 85 THR n 1 86 THR n 1 87 LEU n 1 88 ALA n 1 89 GLU n 1 90 PHE n 1 91 SER n 1 92 LEU n 1 93 ASN n 1 94 GLN n 1 95 TYR n 1 96 GLY n 1 97 LYS n 1 98 ASP n 1 99 TYR n 1 100 ILE n 1 101 ASP n 1 102 ILE n 1 103 SER n 1 104 ASN n 1 105 ILE n 1 106 LYS n 1 107 GLY n 1 108 PHE n 1 109 ASN n 1 110 VAL n 1 111 PRO n 1 112 MET n 1 113 ASP n 1 114 PHE n 1 115 SER n 1 116 PRO n 1 117 THR n 1 118 THR n 1 119 ARG n 1 120 GLY n 1 121 CYS n 1 122 ARG n 1 123 GLY n 1 124 VAL n 1 125 ARG n 1 126 CYS n 1 127 ALA n 1 128 ALA n 1 129 ASP n 1 130 ILE n 1 131 VAL n 1 132 GLY n 1 133 GLN n 1 134 CYS n 1 135 PRO n 1 136 ALA n 1 137 LYS n 1 138 LEU n 1 139 LYS n 1 140 ALA n 1 141 PRO n 1 142 GLY n 1 143 GLY n 1 144 GLY n 1 145 CYS n 1 146 ASN n 1 147 ASP n 1 148 ALA n 1 149 CYS n 1 150 THR n 1 151 VAL n 1 152 PHE n 1 153 GLN n 1 154 THR n 1 155 SER n 1 156 GLU n 1 157 TYR n 1 158 CYS n 1 159 CYS n 1 160 THR n 1 161 THR n 1 162 GLY n 1 163 LYS n 1 164 CYS n 1 165 GLY n 1 166 PRO n 1 167 THR n 1 168 GLU n 1 169 TYR n 1 170 SER n 1 171 ARG n 1 172 PHE n 1 173 PHE n 1 174 LYS n 1 175 ARG n 1 176 LEU n 1 177 CYS n 1 178 PRO n 1 179 ASP n 1 180 ALA n 1 181 PHE n 1 182 SER n 1 183 TYR n 1 184 VAL n 1 185 LEU n 1 186 ASP n 1 187 LYS n 1 188 PRO n 1 189 THR n 1 190 THR n 1 191 VAL n 1 192 THR n 1 193 CYS n 1 194 PRO n 1 195 GLY n 1 196 SER n 1 197 SER n 1 198 ASN n 1 199 TYR n 1 200 ARG n 1 201 VAL n 1 202 THR n 1 203 PHE n 1 204 CYS n 1 205 PRO n 1 206 THR n 1 207 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name katemfe _entity_src_nat.pdbx_organism_scientific 'Thaumatococcus daniellii' _entity_src_nat.pdbx_ncbi_taxonomy_id 4621 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8RVT0_THADA _struct_ref.pdbx_db_accession Q8RVT0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VCI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8RVT0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VCI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;6 uL protein solution containing 18 mg/mL thaumatin in 100 mM ADA disodium salt buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2010-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97633 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97633 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3VCI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 54.266 _reflns.d_resolution_high 1.500 _reflns.number_obs 12129 _reflns.number_all 12216 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.500 1.580 97.7 0.014 1.364 0.600 14.700 ? ? ? ? ? ? 1 2 1.580 1.680 98.0 0.014 0.900 0.800 14.000 ? ? ? ? ? ? 1 3 1.680 1.790 98.4 0.014 0.498 1.500 15.100 ? ? ? ? ? ? 1 4 1.790 1.940 98.6 0.014 0.277 2.700 14.900 ? ? ? ? ? ? 1 5 1.940 2.120 99.0 0.014 0.155 4.800 13.800 ? ? ? ? ? ? 1 6 2.120 2.370 99.2 0.014 0.091 8.300 15.100 ? ? ? ? ? ? 1 7 2.370 2.740 99.4 0.014 0.064 11.500 14.400 ? ? ? ? ? ? 1 8 2.740 3.350 99.6 0.014 0.038 17.900 13.100 ? ? ? ? ? ? 1 9 3.350 4.740 99.8 0.014 0.026 24.300 13.600 ? ? ? ? ? ? 1 10 4.740 46.094 99.6 0.014 0.022 25.400 12.500 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3VCI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11545 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 54.266 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.17054 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16794 _refine.ls_R_factor_R_free 0.22227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 577 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 19.771 _refine.aniso_B[1][1] 0.24 _refine.aniso_B[2][2] 0.24 _refine.aniso_B[3][3] -0.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3ALD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.233 _refine.pdbx_overall_ESU_R_Free 0.199 _refine.overall_SU_ML 0.122 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.809 _refine.overall_SU_R_Cruickshank_DPI 0.0656 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1551 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1683 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 54.266 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 1615 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.782 1.961 ? 2188 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.435 5.000 ? 206 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.570 23.030 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.948 15.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.788 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 230 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1235 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.173 1.500 ? 1023 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.319 2.000 ? 1641 'X-RAY DIFFRACTION' ? r_scbond_it 3.870 3.000 ? 592 'X-RAY DIFFRACTION' ? r_scangle_it 6.070 4.500 ? 547 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 838 _refine_ls_shell.R_factor_R_work 0.150 _refine_ls_shell.percent_reflns_obs 98.97 _refine_ls_shell.R_factor_R_free 0.197 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3VCI _struct.title 'Thaumatin by Classical Hanging Drop Vapour Diffusion after 9.05 MGy X-Ray dose at ESRF ID29 beamline (Worst Case)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VCI _struct_keywords.pdbx_keywords 'PLANT PROTEIN' _struct_keywords.text 'radiation damage, thin film, Langmuir-Blodgett, LB, PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 129 ? CYS A 134 ? ASP A 129 CYS A 134 1 ? 6 HELX_P HELX_P2 2 PRO A 135 ? LYS A 139 ? PRO A 135 LYS A 139 5 ? 5 HELX_P HELX_P3 3 ASP A 147 ? GLN A 153 ? ASP A 147 GLN A 153 1 ? 7 HELX_P HELX_P4 4 THR A 154 ? CYS A 159 ? THR A 154 CYS A 159 1 ? 6 HELX_P HELX_P5 5 THR A 167 ? CYS A 177 ? THR A 167 CYS A 177 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 9 A CYS 204 1_555 ? ? ? ? ? ? ? 2.139 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 66 SG ? ? A CYS 56 A CYS 66 1_555 ? ? ? ? ? ? ? 2.198 ? ? disulf3 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 71 A CYS 77 1_555 ? ? ? ? ? ? ? 2.116 ? ? disulf4 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 121 A CYS 193 1_555 ? ? ? ? ? ? ? 2.183 ? ? disulf5 disulf ? ? A CYS 126 SG ? ? ? 1_555 A CYS 177 SG ? ? A CYS 126 A CYS 177 1_555 ? ? ? ? ? ? ? 2.165 ? ? disulf6 disulf ? ? A CYS 134 SG ? ? ? 1_555 A CYS 145 SG ? ? A CYS 134 A CYS 145 1_555 ? ? ? ? ? ? ? 2.194 ? ? disulf7 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 149 A CYS 158 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf8 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 164 SG ? ? A CYS 159 A CYS 164 1_555 ? ? ? ? ? ? ? 2.062 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 83 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 84 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 36 ? ASN A 40 ? SER A 36 ASN A 40 A 2 THR A 2 ? ASN A 7 ? THR A 2 ASN A 7 A 3 TYR A 199 ? PHE A 203 ? TYR A 199 PHE A 203 A 4 MET A 112 ? PRO A 116 ? MET A 112 PRO A 116 A 5 VAL A 124 ? CYS A 126 ? VAL A 124 CYS A 126 B 1 ALA A 23 ? LEU A 31 ? ALA A 23 LEU A 31 B 2 VAL A 13 ? SER A 18 ? VAL A 13 SER A 18 B 3 GLY A 48 ? PHE A 58 ? GLY A 48 PHE A 58 B 4 GLY A 64 ? THR A 68 ? GLY A 64 THR A 68 C 1 ALA A 23 ? LEU A 31 ? ALA A 23 LEU A 31 C 2 VAL A 13 ? SER A 18 ? VAL A 13 SER A 18 C 3 GLY A 48 ? PHE A 58 ? GLY A 48 PHE A 58 C 4 LEU A 87 ? GLN A 94 ? LEU A 87 GLN A 94 C 5 LYS A 97 ? SER A 103 ? LYS A 97 SER A 103 C 6 VAL A 191 ? PRO A 194 ? VAL A 191 PRO A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 37 ? O TRP A 37 N ILE A 5 ? N ILE A 5 A 2 3 N GLU A 4 ? N GLU A 4 O TYR A 199 ? O TYR A 199 A 3 4 O ARG A 200 ? O ARG A 200 N SER A 115 ? N SER A 115 A 4 5 N MET A 112 ? N MET A 112 O CYS A 126 ? O CYS A 126 B 1 2 O LEU A 31 ? O LEU A 31 N VAL A 13 ? N VAL A 13 B 2 3 N SER A 18 ? N SER A 18 O LYS A 49 ? O LYS A 49 B 3 4 N TYR A 57 ? N TYR A 57 O ILE A 65 ? O ILE A 65 C 1 2 O LEU A 31 ? O LEU A 31 N VAL A 13 ? N VAL A 13 C 2 3 N SER A 18 ? N SER A 18 O LYS A 49 ? O LYS A 49 C 3 4 N ILE A 50 ? N ILE A 50 O ALA A 88 ? O ALA A 88 C 4 5 N GLN A 94 ? N GLN A 94 O LYS A 97 ? O LYS A 97 C 5 6 N ASP A 98 ? N ASP A 98 O CYS A 193 ? O CYS A 193 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 4 'BINDING SITE FOR RESIDUE GOL A 301' AC2 Software A GOL 302 ? 8 'BINDING SITE FOR RESIDUE GOL A 302' AC3 Software A GOL 303 ? 1 'BINDING SITE FOR RESIDUE GOL A 303' AC4 Software A GOL 304 ? 8 'BINDING SITE FOR RESIDUE GOL A 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 89 ? GLU A 89 . ? 1_555 ? 2 AC1 4 ASP A 101 ? ASP A 101 . ? 1_555 ? 3 AC1 4 VAL A 184 ? VAL A 184 . ? 1_555 ? 4 AC1 4 GOL E . ? GOL A 304 . ? 1_555 ? 5 AC2 8 ILE A 105 ? ILE A 105 . ? 1_555 ? 6 AC2 8 ASP A 147 ? ASP A 147 . ? 1_555 ? 7 AC2 8 ALA A 148 ? ALA A 148 . ? 1_555 ? 8 AC2 8 CYS A 149 ? CYS A 149 . ? 1_555 ? 9 AC2 8 TYR A 157 ? TYR A 157 . ? 1_555 ? 10 AC2 8 PHE A 173 ? PHE A 173 . ? 1_555 ? 11 AC2 8 SER A 182 ? SER A 182 . ? 1_555 ? 12 AC2 8 HOH F . ? HOH A 453 . ? 1_555 ? 13 AC3 1 ASP A 55 ? ASP A 55 . ? 1_555 ? 14 AC4 8 GLY A 47 ? GLY A 47 . ? 1_555 ? 15 AC4 8 PHE A 90 ? PHE A 90 . ? 1_555 ? 16 AC4 8 SER A 91 ? SER A 91 . ? 1_555 ? 17 AC4 8 TYR A 99 ? TYR A 99 . ? 1_555 ? 18 AC4 8 ASP A 101 ? ASP A 101 . ? 1_555 ? 19 AC4 8 THR A 190 ? THR A 190 . ? 1_555 ? 20 AC4 8 GOL B . ? GOL A 301 . ? 1_555 ? 21 AC4 8 HOH F . ? HOH A 425 . ? 1_555 ? # _atom_sites.entry_id 3VCI _atom_sites.fract_transf_matrix[1][1] 0.017201 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017201 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006610 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 CYS 126 126 126 CYS CYS A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 CYS 134 134 134 CYS CYS A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 CYS 145 145 145 CYS CYS A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 CYS 149 149 149 CYS CYS A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 CYS 158 158 158 CYS CYS A . n A 1 159 CYS 159 159 159 CYS CYS A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 CYS 164 164 164 CYS CYS A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 CYS 177 177 177 CYS CYS A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 CYS 193 193 193 CYS CYS A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ALA 207 207 207 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 230 GOL GOL A . C 2 GOL 1 302 240 GOL GOL A . D 2 GOL 1 303 250 GOL GOL A . E 2 GOL 1 304 270 GOL GOL A . F 3 HOH 1 401 1 HOH HOH A . F 3 HOH 2 402 2 HOH HOH A . F 3 HOH 3 403 3 HOH HOH A . F 3 HOH 4 404 4 HOH HOH A . F 3 HOH 5 405 5 HOH HOH A . F 3 HOH 6 406 6 HOH HOH A . F 3 HOH 7 407 7 HOH HOH A . F 3 HOH 8 408 8 HOH HOH A . F 3 HOH 9 409 9 HOH HOH A . F 3 HOH 10 410 10 HOH HOH A . F 3 HOH 11 411 11 HOH HOH A . F 3 HOH 12 412 12 HOH HOH A . F 3 HOH 13 413 13 HOH HOH A . F 3 HOH 14 414 14 HOH HOH A . F 3 HOH 15 415 15 HOH HOH A . F 3 HOH 16 416 16 HOH HOH A . F 3 HOH 17 417 17 HOH HOH A . F 3 HOH 18 418 18 HOH HOH A . F 3 HOH 19 419 19 HOH HOH A . F 3 HOH 20 420 20 HOH HOH A . F 3 HOH 21 421 21 HOH HOH A . F 3 HOH 22 422 22 HOH HOH A . F 3 HOH 23 423 23 HOH HOH A . F 3 HOH 24 424 24 HOH HOH A . F 3 HOH 25 425 25 HOH HOH A . F 3 HOH 26 426 26 HOH HOH A . F 3 HOH 27 427 27 HOH HOH A . F 3 HOH 28 428 28 HOH HOH A . F 3 HOH 29 429 29 HOH HOH A . F 3 HOH 30 430 30 HOH HOH A . F 3 HOH 31 431 31 HOH HOH A . F 3 HOH 32 432 32 HOH HOH A . F 3 HOH 33 433 33 HOH HOH A . F 3 HOH 34 434 34 HOH HOH A . F 3 HOH 35 435 35 HOH HOH A . F 3 HOH 36 436 36 HOH HOH A . F 3 HOH 37 437 37 HOH HOH A . F 3 HOH 38 438 38 HOH HOH A . F 3 HOH 39 439 39 HOH HOH A . F 3 HOH 40 440 40 HOH HOH A . F 3 HOH 41 441 41 HOH HOH A . F 3 HOH 42 442 42 HOH HOH A . F 3 HOH 43 443 43 HOH HOH A . F 3 HOH 44 444 44 HOH HOH A . F 3 HOH 45 445 45 HOH HOH A . F 3 HOH 46 446 46 HOH HOH A . F 3 HOH 47 447 47 HOH HOH A . F 3 HOH 48 448 48 HOH HOH A . F 3 HOH 49 449 49 HOH HOH A . F 3 HOH 50 450 50 HOH HOH A . F 3 HOH 51 451 51 HOH HOH A . F 3 HOH 52 452 52 HOH HOH A . F 3 HOH 53 453 53 HOH HOH A . F 3 HOH 54 454 54 HOH HOH A . F 3 HOH 55 455 55 HOH HOH A . F 3 HOH 56 456 56 HOH HOH A . F 3 HOH 57 457 57 HOH HOH A . F 3 HOH 58 458 58 HOH HOH A . F 3 HOH 59 459 59 HOH HOH A . F 3 HOH 60 460 60 HOH HOH A . F 3 HOH 61 461 61 HOH HOH A . F 3 HOH 62 462 62 HOH HOH A . F 3 HOH 63 463 63 HOH HOH A . F 3 HOH 64 464 64 HOH HOH A . F 3 HOH 65 465 65 HOH HOH A . F 3 HOH 66 466 66 HOH HOH A . F 3 HOH 67 467 67 HOH HOH A . F 3 HOH 68 468 68 HOH HOH A . F 3 HOH 69 469 69 HOH HOH A . F 3 HOH 70 470 70 HOH HOH A . F 3 HOH 71 471 71 HOH HOH A . F 3 HOH 72 472 72 HOH HOH A . F 3 HOH 73 473 73 HOH HOH A . F 3 HOH 74 474 74 HOH HOH A . F 3 HOH 75 475 75 HOH HOH A . F 3 HOH 76 476 76 HOH HOH A . F 3 HOH 77 477 77 HOH HOH A . F 3 HOH 78 478 78 HOH HOH A . F 3 HOH 79 479 79 HOH HOH A . F 3 HOH 80 480 80 HOH HOH A . F 3 HOH 81 481 81 HOH HOH A . F 3 HOH 82 482 82 HOH HOH A . F 3 HOH 83 483 83 HOH HOH A . F 3 HOH 84 484 84 HOH HOH A . F 3 HOH 85 485 85 HOH HOH A . F 3 HOH 86 486 86 HOH HOH A . F 3 HOH 87 487 87 HOH HOH A . F 3 HOH 88 488 88 HOH HOH A . F 3 HOH 89 489 89 HOH HOH A . F 3 HOH 90 490 90 HOH HOH A . F 3 HOH 91 491 91 HOH HOH A . F 3 HOH 92 492 92 HOH HOH A . F 3 HOH 93 493 93 HOH HOH A . F 3 HOH 94 494 94 HOH HOH A . F 3 HOH 95 495 95 HOH HOH A . F 3 HOH 96 496 96 HOH HOH A . F 3 HOH 97 497 97 HOH HOH A . F 3 HOH 98 498 98 HOH HOH A . F 3 HOH 99 499 99 HOH HOH A . F 3 HOH 100 500 100 HOH HOH A . F 3 HOH 101 501 101 HOH HOH A . F 3 HOH 102 502 102 HOH HOH A . F 3 HOH 103 503 103 HOH HOH A . F 3 HOH 104 504 104 HOH HOH A . F 3 HOH 105 505 105 HOH HOH A . F 3 HOH 106 506 106 HOH HOH A . F 3 HOH 107 507 107 HOH HOH A . F 3 HOH 108 508 108 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3VCI _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.820 _pdbx_phasing_MR.d_res_low_rotation 46.100 _pdbx_phasing_MR.d_res_high_translation 1.820 _pdbx_phasing_MR.d_res_low_translation 46.100 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 PXSOFT . ? ? ? ? 'data collection' ? ? ? 6 XSCALE . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CB _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 159 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 479 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 25 ? ? 55.33 -140.21 2 1 CYS A 164 ? ? -49.08 157.62 3 1 ASP A 186 ? ? -48.92 150.68 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 ILE N N N N 154 ILE CA C N S 155 ILE C C N N 156 ILE O O N N 157 ILE CB C N S 158 ILE CG1 C N N 159 ILE CG2 C N N 160 ILE CD1 C N N 161 ILE OXT O N N 162 ILE H H N N 163 ILE H2 H N N 164 ILE HA H N N 165 ILE HB H N N 166 ILE HG12 H N N 167 ILE HG13 H N N 168 ILE HG21 H N N 169 ILE HG22 H N N 170 ILE HG23 H N N 171 ILE HD11 H N N 172 ILE HD12 H N N 173 ILE HD13 H N N 174 ILE HXT H N N 175 LEU N N N N 176 LEU CA C N S 177 LEU C C N N 178 LEU O O N N 179 LEU CB C N N 180 LEU CG C N N 181 LEU CD1 C N N 182 LEU CD2 C N N 183 LEU OXT O N N 184 LEU H H N N 185 LEU H2 H N N 186 LEU HA H N N 187 LEU HB2 H N N 188 LEU HB3 H N N 189 LEU HG H N N 190 LEU HD11 H N N 191 LEU HD12 H N N 192 LEU HD13 H N N 193 LEU HD21 H N N 194 LEU HD22 H N N 195 LEU HD23 H N N 196 LEU HXT H N N 197 LYS N N N N 198 LYS CA C N S 199 LYS C C N N 200 LYS O O N N 201 LYS CB C N N 202 LYS CG C N N 203 LYS CD C N N 204 LYS CE C N N 205 LYS NZ N N N 206 LYS OXT O N N 207 LYS H H N N 208 LYS H2 H N N 209 LYS HA H N N 210 LYS HB2 H N N 211 LYS HB3 H N N 212 LYS HG2 H N N 213 LYS HG3 H N N 214 LYS HD2 H N N 215 LYS HD3 H N N 216 LYS HE2 H N N 217 LYS HE3 H N N 218 LYS HZ1 H N N 219 LYS HZ2 H N N 220 LYS HZ3 H N N 221 LYS HXT H N N 222 MET N N N N 223 MET CA C N S 224 MET C C N N 225 MET O O N N 226 MET CB C N N 227 MET CG C N N 228 MET SD S N N 229 MET CE C N N 230 MET OXT O N N 231 MET H H N N 232 MET H2 H N N 233 MET HA H N N 234 MET HB2 H N N 235 MET HB3 H N N 236 MET HG2 H N N 237 MET HG3 H N N 238 MET HE1 H N N 239 MET HE2 H N N 240 MET HE3 H N N 241 MET HXT H N N 242 PHE N N N N 243 PHE CA C N S 244 PHE C C N N 245 PHE O O N N 246 PHE CB C N N 247 PHE CG C Y N 248 PHE CD1 C Y N 249 PHE CD2 C Y N 250 PHE CE1 C Y N 251 PHE CE2 C Y N 252 PHE CZ C Y N 253 PHE OXT O N N 254 PHE H H N N 255 PHE H2 H N N 256 PHE HA H N N 257 PHE HB2 H N N 258 PHE HB3 H N N 259 PHE HD1 H N N 260 PHE HD2 H N N 261 PHE HE1 H N N 262 PHE HE2 H N N 263 PHE HZ H N N 264 PHE HXT H N N 265 PRO N N N N 266 PRO CA C N S 267 PRO C C N N 268 PRO O O N N 269 PRO CB C N N 270 PRO CG C N N 271 PRO CD C N N 272 PRO OXT O N N 273 PRO H H N N 274 PRO HA H N N 275 PRO HB2 H N N 276 PRO HB3 H N N 277 PRO HG2 H N N 278 PRO HG3 H N N 279 PRO HD2 H N N 280 PRO HD3 H N N 281 PRO HXT H N N 282 SER N N N N 283 SER CA C N S 284 SER C C N N 285 SER O O N N 286 SER CB C N N 287 SER OG O N N 288 SER OXT O N N 289 SER H H N N 290 SER H2 H N N 291 SER HA H N N 292 SER HB2 H N N 293 SER HB3 H N N 294 SER HG H N N 295 SER HXT H N N 296 THR N N N N 297 THR CA C N S 298 THR C C N N 299 THR O O N N 300 THR CB C N R 301 THR OG1 O N N 302 THR CG2 C N N 303 THR OXT O N N 304 THR H H N N 305 THR H2 H N N 306 THR HA H N N 307 THR HB H N N 308 THR HG1 H N N 309 THR HG21 H N N 310 THR HG22 H N N 311 THR HG23 H N N 312 THR HXT H N N 313 TRP N N N N 314 TRP CA C N S 315 TRP C C N N 316 TRP O O N N 317 TRP CB C N N 318 TRP CG C Y N 319 TRP CD1 C Y N 320 TRP CD2 C Y N 321 TRP NE1 N Y N 322 TRP CE2 C Y N 323 TRP CE3 C Y N 324 TRP CZ2 C Y N 325 TRP CZ3 C Y N 326 TRP CH2 C Y N 327 TRP OXT O N N 328 TRP H H N N 329 TRP H2 H N N 330 TRP HA H N N 331 TRP HB2 H N N 332 TRP HB3 H N N 333 TRP HD1 H N N 334 TRP HE1 H N N 335 TRP HE3 H N N 336 TRP HZ2 H N N 337 TRP HZ3 H N N 338 TRP HH2 H N N 339 TRP HXT H N N 340 TYR N N N N 341 TYR CA C N S 342 TYR C C N N 343 TYR O O N N 344 TYR CB C N N 345 TYR CG C Y N 346 TYR CD1 C Y N 347 TYR CD2 C Y N 348 TYR CE1 C Y N 349 TYR CE2 C Y N 350 TYR CZ C Y N 351 TYR OH O N N 352 TYR OXT O N N 353 TYR H H N N 354 TYR H2 H N N 355 TYR HA H N N 356 TYR HB2 H N N 357 TYR HB3 H N N 358 TYR HD1 H N N 359 TYR HD2 H N N 360 TYR HE1 H N N 361 TYR HE2 H N N 362 TYR HH H N N 363 TYR HXT H N N 364 VAL N N N N 365 VAL CA C N S 366 VAL C C N N 367 VAL O O N N 368 VAL CB C N N 369 VAL CG1 C N N 370 VAL CG2 C N N 371 VAL OXT O N N 372 VAL H H N N 373 VAL H2 H N N 374 VAL HA H N N 375 VAL HB H N N 376 VAL HG11 H N N 377 VAL HG12 H N N 378 VAL HG13 H N N 379 VAL HG21 H N N 380 VAL HG22 H N N 381 VAL HG23 H N N 382 VAL HXT H N N 383 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HOH O H1 sing N N 142 HOH O H2 sing N N 143 ILE N CA sing N N 144 ILE N H sing N N 145 ILE N H2 sing N N 146 ILE CA C sing N N 147 ILE CA CB sing N N 148 ILE CA HA sing N N 149 ILE C O doub N N 150 ILE C OXT sing N N 151 ILE CB CG1 sing N N 152 ILE CB CG2 sing N N 153 ILE CB HB sing N N 154 ILE CG1 CD1 sing N N 155 ILE CG1 HG12 sing N N 156 ILE CG1 HG13 sing N N 157 ILE CG2 HG21 sing N N 158 ILE CG2 HG22 sing N N 159 ILE CG2 HG23 sing N N 160 ILE CD1 HD11 sing N N 161 ILE CD1 HD12 sing N N 162 ILE CD1 HD13 sing N N 163 ILE OXT HXT sing N N 164 LEU N CA sing N N 165 LEU N H sing N N 166 LEU N H2 sing N N 167 LEU CA C sing N N 168 LEU CA CB sing N N 169 LEU CA HA sing N N 170 LEU C O doub N N 171 LEU C OXT sing N N 172 LEU CB CG sing N N 173 LEU CB HB2 sing N N 174 LEU CB HB3 sing N N 175 LEU CG CD1 sing N N 176 LEU CG CD2 sing N N 177 LEU CG HG sing N N 178 LEU CD1 HD11 sing N N 179 LEU CD1 HD12 sing N N 180 LEU CD1 HD13 sing N N 181 LEU CD2 HD21 sing N N 182 LEU CD2 HD22 sing N N 183 LEU CD2 HD23 sing N N 184 LEU OXT HXT sing N N 185 LYS N CA sing N N 186 LYS N H sing N N 187 LYS N H2 sing N N 188 LYS CA C sing N N 189 LYS CA CB sing N N 190 LYS CA HA sing N N 191 LYS C O doub N N 192 LYS C OXT sing N N 193 LYS CB CG sing N N 194 LYS CB HB2 sing N N 195 LYS CB HB3 sing N N 196 LYS CG CD sing N N 197 LYS CG HG2 sing N N 198 LYS CG HG3 sing N N 199 LYS CD CE sing N N 200 LYS CD HD2 sing N N 201 LYS CD HD3 sing N N 202 LYS CE NZ sing N N 203 LYS CE HE2 sing N N 204 LYS CE HE3 sing N N 205 LYS NZ HZ1 sing N N 206 LYS NZ HZ2 sing N N 207 LYS NZ HZ3 sing N N 208 LYS OXT HXT sing N N 209 MET N CA sing N N 210 MET N H sing N N 211 MET N H2 sing N N 212 MET CA C sing N N 213 MET CA CB sing N N 214 MET CA HA sing N N 215 MET C O doub N N 216 MET C OXT sing N N 217 MET CB CG sing N N 218 MET CB HB2 sing N N 219 MET CB HB3 sing N N 220 MET CG SD sing N N 221 MET CG HG2 sing N N 222 MET CG HG3 sing N N 223 MET SD CE sing N N 224 MET CE HE1 sing N N 225 MET CE HE2 sing N N 226 MET CE HE3 sing N N 227 MET OXT HXT sing N N 228 PHE N CA sing N N 229 PHE N H sing N N 230 PHE N H2 sing N N 231 PHE CA C sing N N 232 PHE CA CB sing N N 233 PHE CA HA sing N N 234 PHE C O doub N N 235 PHE C OXT sing N N 236 PHE CB CG sing N N 237 PHE CB HB2 sing N N 238 PHE CB HB3 sing N N 239 PHE CG CD1 doub Y N 240 PHE CG CD2 sing Y N 241 PHE CD1 CE1 sing Y N 242 PHE CD1 HD1 sing N N 243 PHE CD2 CE2 doub Y N 244 PHE CD2 HD2 sing N N 245 PHE CE1 CZ doub Y N 246 PHE CE1 HE1 sing N N 247 PHE CE2 CZ sing Y N 248 PHE CE2 HE2 sing N N 249 PHE CZ HZ sing N N 250 PHE OXT HXT sing N N 251 PRO N CA sing N N 252 PRO N CD sing N N 253 PRO N H sing N N 254 PRO CA C sing N N 255 PRO CA CB sing N N 256 PRO CA HA sing N N 257 PRO C O doub N N 258 PRO C OXT sing N N 259 PRO CB CG sing N N 260 PRO CB HB2 sing N N 261 PRO CB HB3 sing N N 262 PRO CG CD sing N N 263 PRO CG HG2 sing N N 264 PRO CG HG3 sing N N 265 PRO CD HD2 sing N N 266 PRO CD HD3 sing N N 267 PRO OXT HXT sing N N 268 SER N CA sing N N 269 SER N H sing N N 270 SER N H2 sing N N 271 SER CA C sing N N 272 SER CA CB sing N N 273 SER CA HA sing N N 274 SER C O doub N N 275 SER C OXT sing N N 276 SER CB OG sing N N 277 SER CB HB2 sing N N 278 SER CB HB3 sing N N 279 SER OG HG sing N N 280 SER OXT HXT sing N N 281 THR N CA sing N N 282 THR N H sing N N 283 THR N H2 sing N N 284 THR CA C sing N N 285 THR CA CB sing N N 286 THR CA HA sing N N 287 THR C O doub N N 288 THR C OXT sing N N 289 THR CB OG1 sing N N 290 THR CB CG2 sing N N 291 THR CB HB sing N N 292 THR OG1 HG1 sing N N 293 THR CG2 HG21 sing N N 294 THR CG2 HG22 sing N N 295 THR CG2 HG23 sing N N 296 THR OXT HXT sing N N 297 TRP N CA sing N N 298 TRP N H sing N N 299 TRP N H2 sing N N 300 TRP CA C sing N N 301 TRP CA CB sing N N 302 TRP CA HA sing N N 303 TRP C O doub N N 304 TRP C OXT sing N N 305 TRP CB CG sing N N 306 TRP CB HB2 sing N N 307 TRP CB HB3 sing N N 308 TRP CG CD1 doub Y N 309 TRP CG CD2 sing Y N 310 TRP CD1 NE1 sing Y N 311 TRP CD1 HD1 sing N N 312 TRP CD2 CE2 doub Y N 313 TRP CD2 CE3 sing Y N 314 TRP NE1 CE2 sing Y N 315 TRP NE1 HE1 sing N N 316 TRP CE2 CZ2 sing Y N 317 TRP CE3 CZ3 doub Y N 318 TRP CE3 HE3 sing N N 319 TRP CZ2 CH2 doub Y N 320 TRP CZ2 HZ2 sing N N 321 TRP CZ3 CH2 sing Y N 322 TRP CZ3 HZ3 sing N N 323 TRP CH2 HH2 sing N N 324 TRP OXT HXT sing N N 325 TYR N CA sing N N 326 TYR N H sing N N 327 TYR N H2 sing N N 328 TYR CA C sing N N 329 TYR CA CB sing N N 330 TYR CA HA sing N N 331 TYR C O doub N N 332 TYR C OXT sing N N 333 TYR CB CG sing N N 334 TYR CB HB2 sing N N 335 TYR CB HB3 sing N N 336 TYR CG CD1 doub Y N 337 TYR CG CD2 sing Y N 338 TYR CD1 CE1 sing Y N 339 TYR CD1 HD1 sing N N 340 TYR CD2 CE2 doub Y N 341 TYR CD2 HD2 sing N N 342 TYR CE1 CZ doub Y N 343 TYR CE1 HE1 sing N N 344 TYR CE2 CZ sing Y N 345 TYR CE2 HE2 sing N N 346 TYR CZ OH sing N N 347 TYR OH HH sing N N 348 TYR OXT HXT sing N N 349 VAL N CA sing N N 350 VAL N H sing N N 351 VAL N H2 sing N N 352 VAL CA C sing N N 353 VAL CA CB sing N N 354 VAL CA HA sing N N 355 VAL C O doub N N 356 VAL C OXT sing N N 357 VAL CB CG1 sing N N 358 VAL CB CG2 sing N N 359 VAL CB HB sing N N 360 VAL CG1 HG11 sing N N 361 VAL CG1 HG12 sing N N 362 VAL CG1 HG13 sing N N 363 VAL CG2 HG21 sing N N 364 VAL CG2 HG22 sing N N 365 VAL CG2 HG23 sing N N 366 VAL OXT HXT sing N N 367 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ALD _pdbx_initial_refinement_model.details 'PDB ENTRY 3ALD' #