HEADER TRANSFERASE/ANTIBOTIC/INHIBITOR 04-JAN-12 3VCQ OBSLTE 08-FEB-12 3VCQ 4DFU TITLE INHIBITION OF AN ANTIBIOTIC RESISTANCE ENZYME: CRYSTAL STRUCTURE OF TITLE 2 AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(2")-ID/APH(2")-IVA IN COMPLEX TITLE 3 WITH KANAMYCIN INHIBITED WITH QUERCETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-301; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: APH(2'')-ID; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, EUKARYOTIC PROTEIN KINASE-LIKE FOLD, AMINOGLYCOSIDE KEYWDS 3 PHOSPHOTRANSFERASE, KINASE, AMINOGLYCOSIDES, INTRACELLULAR, KEYWDS 4 ANTIBIOTIC, TRANSFERASE-ANTIBOTIC-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,A.DONG,E.EVDOKIMOVA,O.EGOROVA,R.DI LEO,H.LI,T.SHAKYA, AUTHOR 2 G.D.WRIGHT,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 OF INFECTIOUS DISEASES (CSGID) REVDAT 2 08-FEB-12 3VCQ 1 OBSLTE REVDAT 1 25-JAN-12 3VCQ 0 SPRSDE 25-JAN-12 3VCQ 3R82 JRNL AUTH T.SHAKYA,P.J.STOGIOS,N.WAGLECHNER,E.EVDOKIMOVA,L.EJIM, JRNL AUTH 2 J.E.BLANCHARD,A.G.MCARTHUR,A.SAVCHENKO,G.D.WRIGHT JRNL TITL A SMALL MOLECULE DISCRIMINATION MAP OF THE ANTIBIOTIC JRNL TITL 2 RESISTANCE KINOME. JRNL REF CHEM.BIOL. V. 18 1591 2011 JRNL REFN ISSN 1074-5521 JRNL PMID 22195561 JRNL DOI 10.1016/J.CHEMBIOL.2011.10.018 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 81610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8380 - 4.2531 0.98 7701 395 0.1780 0.2224 REMARK 3 2 4.2531 - 3.3813 0.99 7794 387 0.1843 0.2118 REMARK 3 3 3.3813 - 2.9554 0.99 7845 391 0.2286 0.2878 REMARK 3 4 2.9554 - 2.6859 1.00 7769 387 0.2553 0.3463 REMARK 3 5 2.6859 - 2.4938 1.00 7900 395 0.2468 0.2998 REMARK 3 6 2.4938 - 2.3470 0.99 7793 394 0.2527 0.3451 REMARK 3 7 2.3470 - 2.2297 0.99 7794 390 0.2615 0.3773 REMARK 3 8 2.2297 - 2.1327 0.98 7730 377 0.2802 0.3420 REMARK 3 9 2.1327 - 2.0507 0.98 7691 385 0.3018 0.3232 REMARK 3 10 2.0507 - 1.9800 0.97 7714 378 0.3246 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 56.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.76410 REMARK 3 B22 (A**2) : -24.12420 REMARK 3 B33 (A**2) : -12.42920 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -3.15290 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5175 REMARK 3 ANGLE : 1.334 6999 REMARK 3 CHIRALITY : 0.077 748 REMARK 3 PLANARITY : 0.008 886 REMARK 3 DIHEDRAL : 15.106 1981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A and resid 3:99 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8069 22.7535 -22.8078 REMARK 3 T TENSOR REMARK 3 T11: 0.2896 T22: 0.3554 REMARK 3 T33: 0.3103 T12: 0.0013 REMARK 3 T13: -0.0247 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.3239 L22: 2.6345 REMARK 3 L33: 1.5397 L12: -0.1034 REMARK 3 L13: 0.5282 L23: 0.2824 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0179 S13: 0.0292 REMARK 3 S21: 0.0579 S22: -0.0839 S23: 0.0329 REMARK 3 S31: -0.1643 S32: 0.0275 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain B and resid 3:99 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8155 -10.3253 -15.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.4895 T22: 0.5057 REMARK 3 T33: 0.4366 T12: -0.0351 REMARK 3 T13: 0.0473 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.6182 L22: 2.4067 REMARK 3 L33: 1.9817 L12: -0.2239 REMARK 3 L13: 0.5063 L23: -0.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.1540 S12: 0.2374 S13: 0.0283 REMARK 3 S21: -0.0430 S22: -0.1045 S23: 0.1867 REMARK 3 S31: 0.2756 S32: -0.0813 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain A and resid 100:298 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3096 7.8829 -38.2187 REMARK 3 T TENSOR REMARK 3 T11: 0.4198 T22: 0.5309 REMARK 3 T33: 0.4828 T12: 0.0169 REMARK 3 T13: 0.0161 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.8619 L22: 3.6814 REMARK 3 L33: 0.8475 L12: 1.6172 REMARK 3 L13: 0.4570 L23: 1.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: 0.1610 S13: -0.0674 REMARK 3 S21: -0.2131 S22: 0.0817 S23: -0.3616 REMARK 3 S31: 0.0453 S32: 0.1531 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain B and resid 100:299 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6397 2.5231 2.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.4403 REMARK 3 T33: 0.4272 T12: -0.0531 REMARK 3 T13: 0.0078 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5407 L22: 2.8174 REMARK 3 L33: 0.3964 L12: -0.5990 REMARK 3 L13: -0.0365 L23: -0.5969 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: -0.0518 S13: 0.0499 REMARK 3 S21: 0.2013 S22: -0.0150 S23: -0.3227 REMARK 3 S31: -0.0903 S32: 0.0356 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB069880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 37.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59200 REMARK 200 FOR SHELL : 2.704 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M HEPES PH 7.5, 29% REMARK 280 PEG3350, 1 MM KANAMYCIN, 5 MM QUERCITIN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.90700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 98 O27 QUE A 402 2.01 REMARK 500 O HOH B 523 O HOH B 591 2.10 REMARK 500 N ILE A 98 O13 QUE A 402 2.13 REMARK 500 NH1 ARG B 125 OE2 GLU B 129 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 15.80 53.75 REMARK 500 SER A 140 -73.65 -47.34 REMARK 500 ASN A 141 10.62 -59.86 REMARK 500 ASN A 196 -3.49 71.45 REMARK 500 ASP A 217 74.85 58.44 REMARK 500 SER A 224 -150.92 -167.20 REMARK 500 GLU A 239 -156.58 -127.43 REMARK 500 LYS A 253 47.50 72.82 REMARK 500 ASP A 256 70.31 -159.07 REMARK 500 ARG A 296 26.03 -69.98 REMARK 500 ARG B 41 19.69 51.71 REMARK 500 ASN B 141 6.19 -64.71 REMARK 500 ASN B 196 -1.65 78.56 REMARK 500 ASP B 217 75.67 58.43 REMARK 500 SER B 224 -148.30 -158.86 REMARK 500 GLU B 239 -151.33 -122.20 REMARK 500 TYR B 284 75.74 -63.94 REMARK 500 SER B 297 44.77 -80.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R7Z RELATED DB: PDB REMARK 900 RELATED ID: 3R80 RELATED DB: PDB REMARK 900 RELATED ID: 3R81 RELATED DB: PDB REMARK 900 RELATED ID: IDP91189 RELATED DB: TARGETTRACK DBREF 3VCQ A 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 3VCQ B 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 3VCQ MSE A -20 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY A -19 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER A -18 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER A -17 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -16 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -15 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -14 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -13 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -12 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS A -11 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER A -10 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER A -9 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY A -8 UNP O68183 EXPRESSION TAG SEQADV 3VCQ ARG A -7 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLU A -6 UNP O68183 EXPRESSION TAG SEQADV 3VCQ ASN A -5 UNP O68183 EXPRESSION TAG SEQADV 3VCQ LEU A -4 UNP O68183 EXPRESSION TAG SEQADV 3VCQ TYR A -3 UNP O68183 EXPRESSION TAG SEQADV 3VCQ PHE A -2 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLN A -1 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY A 0 UNP O68183 EXPRESSION TAG SEQADV 3VCQ MSE B -20 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY B -19 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER B -18 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER B -17 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -16 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -15 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -14 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -13 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -12 UNP O68183 EXPRESSION TAG SEQADV 3VCQ HIS B -11 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER B -10 UNP O68183 EXPRESSION TAG SEQADV 3VCQ SER B -9 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY B -8 UNP O68183 EXPRESSION TAG SEQADV 3VCQ ARG B -7 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLU B -6 UNP O68183 EXPRESSION TAG SEQADV 3VCQ ASN B -5 UNP O68183 EXPRESSION TAG SEQADV 3VCQ LEU B -4 UNP O68183 EXPRESSION TAG SEQADV 3VCQ TYR B -3 UNP O68183 EXPRESSION TAG SEQADV 3VCQ PHE B -2 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLN B -1 UNP O68183 EXPRESSION TAG SEQADV 3VCQ GLY B 0 UNP O68183 EXPRESSION TAG SEQRES 1 A 322 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 322 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG THR TYR THR SEQRES 3 A 322 PHE ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO SEQRES 4 A 322 ASP PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY SEQRES 5 A 322 ASN ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE SEQRES 6 A 322 PHE LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU SEQRES 7 A 322 PHE ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS SEQRES 8 A 322 LEU PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MSE SEQRES 9 A 322 PRO SER GLU THR TYR GLN MSE SER PHE ALA GLY PHE THR SEQRES 10 A 322 LYS ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN SEQRES 11 A 322 ASN LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP SEQRES 12 A 322 LEU ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SEQRES 13 A 322 SER GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU SEQRES 14 A 322 LYS ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SEQRES 15 A 322 SER ARG GLU LEU LYS GLY PRO GLN MSE LYS LYS VAL ASP SEQRES 16 A 322 ASP PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE SEQRES 17 A 322 LYS TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER SEQRES 18 A 322 ASP HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS SEQRES 19 A 322 GLY ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO SEQRES 20 A 322 ASP ASN ASP PHE ILE SER LEU MSE GLU ASP ASP GLU GLU SEQRES 21 A 322 TYR GLY MSE GLU PHE VAL SER LYS ILE LEU ASN HIS TYR SEQRES 22 A 322 LYS HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG SEQRES 23 A 322 MSE LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR SEQRES 24 A 322 GLY LYS GLU TYR GLY TYR MSE ASP TRP TYR GLU GLU GLY SEQRES 25 A 322 LEU ASN GLU ILE ARG SER ILE LYS ILE LYS SEQRES 1 B 322 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 322 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG THR TYR THR SEQRES 3 B 322 PHE ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO SEQRES 4 B 322 ASP PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY SEQRES 5 B 322 ASN ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE SEQRES 6 B 322 PHE LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU SEQRES 7 B 322 PHE ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS SEQRES 8 B 322 LEU PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MSE SEQRES 9 B 322 PRO SER GLU THR TYR GLN MSE SER PHE ALA GLY PHE THR SEQRES 10 B 322 LYS ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN SEQRES 11 B 322 ASN LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP SEQRES 12 B 322 LEU ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SEQRES 13 B 322 SER GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU SEQRES 14 B 322 LYS ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SEQRES 15 B 322 SER ARG GLU LEU LYS GLY PRO GLN MSE LYS LYS VAL ASP SEQRES 16 B 322 ASP PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE SEQRES 17 B 322 LYS TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER SEQRES 18 B 322 ASP HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS SEQRES 19 B 322 GLY ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO SEQRES 20 B 322 ASP ASN ASP PHE ILE SER LEU MSE GLU ASP ASP GLU GLU SEQRES 21 B 322 TYR GLY MSE GLU PHE VAL SER LYS ILE LEU ASN HIS TYR SEQRES 22 B 322 LYS HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG SEQRES 23 B 322 MSE LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR SEQRES 24 B 322 GLY LYS GLU TYR GLY TYR MSE ASP TRP TYR GLU GLU GLY SEQRES 25 B 322 LEU ASN GLU ILE ARG SER ILE LYS ILE LYS MODRES 3VCQ MSE A 83 MET SELENOMETHIONINE MODRES 3VCQ MSE A 90 MET SELENOMETHIONINE MODRES 3VCQ MSE A 170 MET SELENOMETHIONINE MODRES 3VCQ MSE A 234 MET SELENOMETHIONINE MODRES 3VCQ MSE A 242 MET SELENOMETHIONINE MODRES 3VCQ MSE A 266 MET SELENOMETHIONINE MODRES 3VCQ MSE A 285 MET SELENOMETHIONINE MODRES 3VCQ MSE B 83 MET SELENOMETHIONINE MODRES 3VCQ MSE B 90 MET SELENOMETHIONINE MODRES 3VCQ MSE B 170 MET SELENOMETHIONINE MODRES 3VCQ MSE B 234 MET SELENOMETHIONINE MODRES 3VCQ MSE B 242 MET SELENOMETHIONINE MODRES 3VCQ MSE B 266 MET SELENOMETHIONINE MODRES 3VCQ MSE B 285 MET SELENOMETHIONINE HET MSE A 83 8 HET MSE A 90 8 HET MSE A 170 8 HET MSE A 234 8 HET MSE A 242 8 HET MSE A 266 8 HET MSE A 285 8 HET MSE B 83 8 HET MSE B 90 8 HET MSE B 170 8 HET MSE B 234 8 HET MSE B 242 8 HET MSE B 266 8 HET MSE B 285 8 HET KAN A 401 33 HET QUE A 402 22 HET QUE A 403 22 HET KAN B 401 33 HET QUE B 402 22 HETNAM MSE SELENOMETHIONINE HETNAM KAN KANAMYCIN A HETNAM QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE HETSYN QUE QUERCETIN FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 KAN 2(C18 H36 N4 O11) FORMUL 4 QUE 3(C15 H10 O7) FORMUL 8 HOH *172(H2 O) HELIX 1 1 THR A 5 TYR A 17 1 13 HELIX 2 2 HIS A 50 HIS A 68 1 19 HELIX 3 3 THR A 104 ASN A 110 1 7 HELIX 4 4 PRO A 112 HIS A 131 1 20 HELIX 5 5 LYS A 139 VAL A 143 5 5 HELIX 6 6 ASP A 145 SER A 162 1 18 HELIX 7 7 LYS A 166 GLU A 182 1 17 HELIX 8 8 ASN A 183 PHE A 187 5 5 HELIX 9 9 SER A 199 ASP A 201 5 3 HELIX 10 10 ASP A 227 SER A 232 1 6 HELIX 11 11 GLY A 241 LYS A 253 1 13 HELIX 12 12 ASP A 256 TYR A 282 1 27 HELIX 13 13 TYR A 284 ARG A 296 1 13 HELIX 14 14 THR B 5 TYR B 17 1 13 HELIX 15 15 HIS B 50 ILE B 67 1 18 HELIX 16 16 THR B 104 ASN B 110 1 7 HELIX 17 17 PRO B 112 HIS B 131 1 20 HELIX 18 18 LYS B 139 VAL B 143 5 5 HELIX 19 19 ASP B 145 SER B 162 1 18 HELIX 20 20 LYS B 166 ASN B 183 1 18 HELIX 21 21 GLU B 184 PHE B 187 5 4 HELIX 22 22 SER B 199 ASP B 201 5 3 HELIX 23 23 ASP B 227 SER B 232 1 6 HELIX 24 24 GLY B 241 LYS B 253 1 13 HELIX 25 25 ASP B 256 TYR B 282 1 27 HELIX 26 26 TYR B 284 ILE B 295 1 12 SHEET 1 A 5 ILE A 25 GLU A 30 0 SHEET 2 A 5 CYS A 34 ILE A 39 -1 O ALA A 36 N SER A 28 SHEET 3 A 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 A 5 ALA A 93 THR A 96 -1 O ALA A 93 N LYS A 46 SHEET 5 A 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 B 3 VAL A 101 PRO A 102 0 SHEET 2 B 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 B 3 THR A 211 ILE A 215 -1 O CYS A 213 N LEU A 204 SHEET 1 C 2 CYS A 192 ILE A 194 0 SHEET 2 C 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 SHEET 1 D 5 ILE B 25 GLU B 30 0 SHEET 2 D 5 CYS B 34 ILE B 39 -1 O GLU B 38 N GLU B 26 SHEET 3 D 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 D 5 ALA B 93 THR B 96 -1 O ALA B 93 N LYS B 46 SHEET 5 D 5 VAL B 78 THR B 81 -1 N VAL B 79 O GLY B 94 SHEET 1 E 3 VAL B 101 PRO B 102 0 SHEET 2 E 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 E 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 F 2 CYS B 192 ILE B 194 0 SHEET 2 F 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 LINK C GLY A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N PRO A 84 1555 1555 1.33 LINK C GLN A 89 N MSE A 90 1555 1555 1.32 LINK C MSE A 90 N SER A 91 1555 1555 1.32 LINK C GLN A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N LYS A 171 1555 1555 1.33 LINK C LEU A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N GLU A 235 1555 1555 1.33 LINK C GLY A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N GLU A 243 1555 1555 1.33 LINK C ARG A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N LYS A 267 1555 1555 1.34 LINK C TYR A 284 N MSE A 285 1555 1555 1.33 LINK C MSE A 285 N ASP A 286 1555 1555 1.33 LINK C GLY B 82 N MSE B 83 1555 1555 1.33 LINK C MSE B 83 N PRO B 84 1555 1555 1.34 LINK C GLN B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N SER B 91 1555 1555 1.33 LINK C GLN B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N LYS B 171 1555 1555 1.34 LINK C LEU B 233 N MSE B 234 1555 1555 1.33 LINK C MSE B 234 N GLU B 235 1555 1555 1.33 LINK C GLY B 241 N MSE B 242 1555 1555 1.33 LINK C MSE B 242 N GLU B 243 1555 1555 1.33 LINK C ARG B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N LYS B 267 1555 1555 1.34 LINK C TYR B 284 N MSE B 285 1555 1555 1.33 LINK C MSE B 285 N ASP B 286 1555 1555 1.33 SITE 1 AC1 13 ASP A 197 SER A 199 ASP A 201 ASP A 220 SITE 2 AC1 13 GLU A 235 GLU A 238 GLU A 239 GLU A 268 SITE 3 AC1 13 TRP A 271 TYR A 278 HOH A 537 HOH A 555 SITE 4 AC1 13 HOH A 572 SITE 1 AC2 9 ILE A 44 LYS A 46 THR A 96 LYS A 97 SITE 2 AC2 9 ILE A 98 GLY A 100 PRO A 102 LEU A 204 SITE 3 AC2 9 ASP A 217 SITE 1 AC3 15 ARG A 52 THR A 55 SER A 85 GLU A 86 SITE 2 AC3 15 THR A 87 TYR A 88 GLN A 89 SER B 51 SITE 3 AC3 15 ARG B 52 THR B 55 SER B 85 GLU B 86 SITE 4 AC3 15 THR B 87 TYR B 88 GLN B 89 SITE 1 AC4 10 ASP B 197 SER B 199 ASP B 201 ASP B 220 SITE 2 AC4 10 GLU B 235 GLU B 238 GLU B 239 GLU B 268 SITE 3 AC4 10 TRP B 271 HOH B 597 SITE 1 AC5 14 ILE B 44 LYS B 46 PRO B 76 PHE B 95 SITE 2 AC5 14 THR B 96 LYS B 97 ILE B 98 GLY B 100 SITE 3 AC5 14 PRO B 102 LEU B 204 ASP B 217 HOH B 570 SITE 4 AC5 14 HOH B 571 HOH B 581 CRYST1 43.141 101.814 70.249 90.00 96.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023180 0.000000 0.002788 0.00000 SCALE2 0.000000 0.009822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014338 0.00000