HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-JAN-12 3VCR TITLE CRYSTAL STRUCTURE OF A PUTATIVE KDPG (2-KETO-3-DEOXY-6- TITLE 2 PHOSPHOGLUCONATE) ALDOLASE FROM OLEISPIRA ANTARCTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE KDPG (2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE) ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 188908; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV-L KEYWDS UNKNOWN FUNCTION, ALDOLASE SUPERFAMILY, CLASS I ALDOLASE, KDPG KEYWDS 2 ALDOLASE DOMAIN, ALPHA/BETA PROTEIN, TIM BETA/ALPHA BARREL, TIM KEYWDS 3 BARREL, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,O.KAGAN,R.DI LEO,V.YIM,A.JOACHIMIAK,A.M.EDWARDS, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 27-NOV-24 3VCR 1 REMARK REVDAT 5 15-NOV-23 3VCR 1 ATOM REVDAT 4 13-SEP-23 3VCR 1 REMARK LINK REVDAT 3 07-AUG-13 3VCR 1 JRNL REVDAT 2 24-JUL-13 3VCR 1 JRNL REVDAT 1 18-JAN-12 3VCR 0 SPRSDE 18-JAN-12 3VCR 3LAB JRNL AUTH M.KUBE,T.N.CHERNIKOVA,Y.AL-RAMAHI,A.BELOQUI,N.LOPEZ-CORTEZ, JRNL AUTH 2 M.E.GUAZZARONI,H.J.HEIPIEPER,S.KLAGES,O.R.KOTSYURBENKO, JRNL AUTH 3 I.LANGER,T.Y.NECHITAYLO,H.LUNSDORF,M.FERNANDEZ,S.JUAREZ, JRNL AUTH 4 S.CIORDIA,A.SINGER,O.KAGAN,O.EGOROVA,P.ALAIN PETIT, JRNL AUTH 5 P.STOGIOS,Y.KIM,A.TCHIGVINTSEV,R.FLICK,R.DENARO,M.GENOVESE, JRNL AUTH 6 J.P.ALBAR,O.N.REVA,M.MARTINEZ-GOMARIZ,H.TRAN,M.FERRER, JRNL AUTH 7 A.SAVCHENKO,A.F.YAKUNIN,M.M.YAKIMOV,O.V.GOLYSHINA, JRNL AUTH 8 R.REINHARDT,P.N.GOLYSHIN JRNL TITL GENOME SEQUENCE AND FUNCTIONAL GENOMIC ANALYSIS OF THE JRNL TITL 2 OIL-DEGRADING BACTERIUM OLEISPIRA ANTARCTICA. JRNL REF NAT COMMUN V. 4 2156 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23877221 JRNL DOI 10.1038/NCOMMS3156 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 40941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : 3.23000 REMARK 3 B12 (A**2) : -1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3305 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4511 ; 1.694 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 6.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;39.557 ;25.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;13.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2415 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2163 ; 0.952 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3487 ; 1.637 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 2.940 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1017 ; 4.613 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6003 35.2077 178.2042 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8970 26.3591 168.0778 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7958 25.1792 131.0165 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7846 16.5303 140.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.910 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WBH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% 2-PROPANOL, 0.1M TRI REMARK 280 -SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.01000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.94508 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.37367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.01000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 21.94508 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.37367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.01000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 21.94508 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.37367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.89017 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 160.74733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.89017 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 160.74733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.89017 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 160.74733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 76.02000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.01000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 65.83525 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 22 O HOH B 527 2.14 REMARK 500 NZ LYS A 136 SG CYS A 162 2.16 REMARK 500 O ALA B 64 O HOH B 609 2.17 REMARK 500 O HOH A 484 O HOH A 623 2.19 REMARK 500 O LEU A 176 O HOH A 641 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 25.17 -74.65 REMARK 500 LEU A 45 38.06 -84.43 REMARK 500 PRO B 13 33.52 -84.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40663 RELATED DB: TARGETTRACK DBREF 3VCR A 0 216 UNP D2YW47 D2YW47_OLEAN 1 217 DBREF 3VCR B 0 216 UNP D2YW47 D2YW47_OLEAN 1 217 SEQRES 1 A 217 GLY MSE THR GLN LEU ASP THR TRP LEU ALA ASN THR LYS SEQRES 2 A 217 PRO LEU ILE PRO VAL ILE VAL ILE ASP ASP LEU VAL HIS SEQRES 3 A 217 ALA ILE PRO MSE ALA LYS ALA LEU VAL ALA GLY GLY VAL SEQRES 4 A 217 HIS LEU LEU GLU VAL THR LEU ARG THR GLU ALA GLY LEU SEQRES 5 A 217 ALA ALA ILE SER ALA ILE LYS LYS ALA VAL PRO GLU ALA SEQRES 6 A 217 ILE VAL GLY ALA GLY THR VAL CYS THR ALA ASP ASP PHE SEQRES 7 A 217 GLN LYS ALA ILE ASP ALA GLY ALA GLN PHE ILE VAL SER SEQRES 8 A 217 PRO GLY LEU THR PRO GLU LEU ILE GLU LYS ALA LYS GLN SEQRES 9 A 217 VAL LYS LEU ASP GLY GLN TRP GLN GLY VAL PHE LEU PRO SEQRES 10 A 217 GLY VAL ALA THR ALA SER GLU VAL MSE ILE ALA ALA GLN SEQRES 11 A 217 ALA GLY ILE THR GLN LEU LYS CYS PHE PRO ALA SER ALA SEQRES 12 A 217 ILE GLY GLY ALA LYS LEU LEU LYS ALA TRP SER GLY PRO SEQRES 13 A 217 PHE PRO ASP ILE GLN PHE CYS PRO THR GLY GLY ILE SER SEQRES 14 A 217 LYS ASP ASN TYR LYS GLU TYR LEU GLY LEU PRO ASN VAL SEQRES 15 A 217 ILE CYS ALA GLY GLY SER TRP LEU THR GLU SER LYS LEU SEQRES 16 A 217 LEU ILE GLU GLY ASP TRP ASN GLU VAL THR ARG ARG ALA SEQRES 17 A 217 SER GLU ILE VAL LYS LEU SER ASP ILE SEQRES 1 B 217 GLY MSE THR GLN LEU ASP THR TRP LEU ALA ASN THR LYS SEQRES 2 B 217 PRO LEU ILE PRO VAL ILE VAL ILE ASP ASP LEU VAL HIS SEQRES 3 B 217 ALA ILE PRO MSE ALA LYS ALA LEU VAL ALA GLY GLY VAL SEQRES 4 B 217 HIS LEU LEU GLU VAL THR LEU ARG THR GLU ALA GLY LEU SEQRES 5 B 217 ALA ALA ILE SER ALA ILE LYS LYS ALA VAL PRO GLU ALA SEQRES 6 B 217 ILE VAL GLY ALA GLY THR VAL CYS THR ALA ASP ASP PHE SEQRES 7 B 217 GLN LYS ALA ILE ASP ALA GLY ALA GLN PHE ILE VAL SER SEQRES 8 B 217 PRO GLY LEU THR PRO GLU LEU ILE GLU LYS ALA LYS GLN SEQRES 9 B 217 VAL LYS LEU ASP GLY GLN TRP GLN GLY VAL PHE LEU PRO SEQRES 10 B 217 GLY VAL ALA THR ALA SER GLU VAL MSE ILE ALA ALA GLN SEQRES 11 B 217 ALA GLY ILE THR GLN LEU LYS CYS PHE PRO ALA SER ALA SEQRES 12 B 217 ILE GLY GLY ALA LYS LEU LEU LYS ALA TRP SER GLY PRO SEQRES 13 B 217 PHE PRO ASP ILE GLN PHE CYS PRO THR GLY GLY ILE SER SEQRES 14 B 217 LYS ASP ASN TYR LYS GLU TYR LEU GLY LEU PRO ASN VAL SEQRES 15 B 217 ILE CYS ALA GLY GLY SER TRP LEU THR GLU SER LYS LEU SEQRES 16 B 217 LEU ILE GLU GLY ASP TRP ASN GLU VAL THR ARG ARG ALA SEQRES 17 B 217 SER GLU ILE VAL LYS LEU SER ASP ILE MODRES 3VCR MSE A 1 MET SELENOMETHIONINE MODRES 3VCR MSE A 29 MET SELENOMETHIONINE MODRES 3VCR MSE A 125 MET SELENOMETHIONINE MODRES 3VCR MSE B 1 MET SELENOMETHIONINE MODRES 3VCR MSE B 29 MET SELENOMETHIONINE MODRES 3VCR MSE B 125 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 29 8 HET MSE A 125 8 HET MSE B 1 8 HET MSE B 29 8 HET MSE B 125 8 HET PYR A 301 6 HET PYR B 301 6 HETNAM MSE SELENOMETHIONINE HETNAM PYR PYRUVIC ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 PYR 2(C3 H4 O3) FORMUL 5 HOH *468(H2 O) HELIX 1 1 THR A 2 ALA A 9 1 8 HELIX 2 2 ASP A 22 VAL A 24 5 3 HELIX 3 3 HIS A 25 GLY A 36 1 12 HELIX 4 4 ALA A 49 VAL A 61 1 13 HELIX 5 5 THR A 73 GLY A 84 1 12 HELIX 6 6 THR A 94 GLY A 108 1 15 HELIX 7 7 THR A 120 ALA A 130 1 11 HELIX 8 8 GLY A 144 GLY A 154 1 11 HELIX 9 9 ASN A 171 GLY A 177 1 7 HELIX 10 10 SER A 187 THR A 190 5 4 HELIX 11 11 GLU A 191 GLY A 198 1 8 HELIX 12 12 ASP A 199 GLU A 209 1 11 HELIX 13 13 LYS A 212 ILE A 216 5 5 HELIX 14 14 THR B 2 ALA B 9 1 8 HELIX 15 15 ASP B 22 VAL B 24 5 3 HELIX 16 16 HIS B 25 GLY B 36 1 12 HELIX 17 17 ALA B 49 VAL B 61 1 13 HELIX 18 18 THR B 73 GLY B 84 1 12 HELIX 19 19 THR B 94 GLY B 108 1 15 HELIX 20 20 THR B 120 GLY B 131 1 12 HELIX 21 21 GLY B 144 GLY B 154 1 11 HELIX 22 22 ASN B 171 GLY B 177 1 7 HELIX 23 23 SER B 187 THR B 190 5 4 HELIX 24 24 GLU B 191 GLY B 198 1 8 HELIX 25 25 ASP B 199 ILE B 210 1 12 HELIX 26 26 LYS B 212 ILE B 216 5 5 SHEET 1 A 4 ILE A 65 GLY A 69 0 SHEET 2 A 4 LEU A 40 THR A 44 1 N LEU A 41 O GLY A 67 SHEET 3 A 4 LEU A 14 ILE A 18 1 N ILE A 18 O GLU A 42 SHEET 4 A 4 ALA A 184 GLY A 186 1 O ALA A 184 N ILE A 15 SHEET 1 B 4 PHE A 87 SER A 90 0 SHEET 2 B 4 VAL A 113 VAL A 118 1 O LEU A 115 N ILE A 88 SHEET 3 B 4 GLN A 134 CYS A 137 1 O LYS A 136 N PRO A 116 SHEET 4 B 4 GLN A 160 PRO A 163 1 O GLN A 160 N LEU A 135 SHEET 1 C 4 ILE B 65 GLY B 69 0 SHEET 2 C 4 LEU B 40 THR B 44 1 N LEU B 41 O GLY B 67 SHEET 3 C 4 LEU B 14 ILE B 18 1 N ILE B 18 O GLU B 42 SHEET 4 C 4 ALA B 184 GLY B 186 1 O ALA B 184 N ILE B 15 SHEET 1 D 4 PHE B 87 SER B 90 0 SHEET 2 D 4 VAL B 113 VAL B 118 1 O LEU B 115 N ILE B 88 SHEET 3 D 4 GLN B 134 CYS B 137 1 O LYS B 136 N PRO B 116 SHEET 4 D 4 GLN B 160 PRO B 163 1 O CYS B 162 N LEU B 135 LINK C MSE A 1 N THR A 2 1555 1555 1.32 LINK C PRO A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N ALA A 30 1555 1555 1.34 LINK C VAL A 124 N MSE A 125 1555 1555 1.32 LINK C MSE A 125 N ILE A 126 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C PRO B 28 N MSE B 29 1555 1555 1.33 LINK C MSE B 29 N ALA B 30 1555 1555 1.34 LINK C VAL B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N ILE B 126 1555 1555 1.33 CISPEP 1 PHE A 138 PRO A 139 0 -5.47 CISPEP 2 PHE B 138 PRO B 139 0 -3.90 SITE 1 AC1 5 ARG A 46 THR A 70 VAL A 89 SER A 90 SITE 2 AC1 5 PRO A 91 SITE 1 AC2 6 ARG B 46 THR B 70 VAL B 89 SER B 90 SITE 2 AC2 6 PRO B 91 THR B 164 CRYST1 76.020 76.020 241.121 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013154 0.007595 0.000000 0.00000 SCALE2 0.000000 0.015189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004147 0.00000 HETATM 1 N MSE A 1 9.941 14.896 179.477 1.00 36.97 N ANISOU 1 N MSE A 1 4682 4682 4682 0 0 0 N HETATM 2 CA MSE A 1 10.063 16.289 178.953 1.00 37.24 C ANISOU 2 CA MSE A 1 4717 4717 4717 0 0 0 C HETATM 3 C MSE A 1 10.487 17.367 179.940 1.00 34.82 C ANISOU 3 C MSE A 1 4410 4410 4410 0 0 0 C HETATM 4 O MSE A 1 9.904 17.547 181.008 1.00 34.40 O ANISOU 4 O MSE A 1 4357 4357 4357 0 0 0 O HETATM 5 CB MSE A 1 8.752 16.752 178.325 1.00 38.95 C ANISOU 5 CB MSE A 1 4933 4933 4933 0 0 0 C HETATM 6 CG MSE A 1 8.502 16.214 176.949 1.00 45.98 C ANISOU 6 CG MSE A 1 5823 5823 5823 0 0 0 C HETATM 7 SE MSE A 1 6.718 16.844 176.469 1.00 64.23 SE ANISOU 7 SE MSE A 1 8135 8135 8135 0 0 0 SE HETATM 8 CE MSE A 1 7.206 18.427 175.392 1.00 55.24 C ANISOU 8 CE MSE A 1 6996 6996 6996 0 0 0 C