data_3VD6 # _entry.id 3VD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VD6 pdb_00003vd6 10.2210/pdb3vd6/pdb NDB NA1543 ? ? RCSB RCSB069896 ? ? WWPDB D_1000069896 ? ? # _pdbx_database_status.entry_id 3VD6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-01-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jacques, D.A.' 1 'Ripin, N.' 2 'Wilkinson-White, L.E.' 3 'Guss, J.M.' 4 'Matthews, J.M.' 5 # _citation.id primary _citation.title 'GATA1 directly mediates interactions with closely spaced pseudopalindromic but not distantly spaced double GATA sites on DNA.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 24 _citation.page_first 1649 _citation.page_last 1659 _citation.year 2015 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 1469-896X _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26234528 _citation.pdbx_database_id_DOI 10.1002/pro.2760 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilkinson-White, L.' 1 ? primary 'Lester, K.L.' 2 ? primary 'Ripin, N.' 3 ? primary 'Jacques, D.A.' 4 ? primary 'Mitchell Guss, J.' 5 ? primary 'Matthews, J.M.' 6 ? # _cell.length_a 54.331 _cell.length_b 37.401 _cell.length_c 65.484 _cell.angle_alpha 90.000 _cell.angle_beta 98.510 _cell.angle_gamma 90.000 _cell.entry_id 3VD6 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3VD6 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3') ; 6114.963 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3') ; 6151.020 1 ? ? ? ? 3 polymer man 'Erythroid transcription factor' 13507.752 1 ? ? 'N and C Fingers, residues 200-318' ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 6 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Eryf1, GATA-binding factor 1, GATA-1, GF-1, NF-E1 DNA-binding protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DT)(DC)' TTGTCTTATCAGATGGACTC A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DA)(DG)(DT)(DC)(DC)(DA)(DT)(DC)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)(DC)' AAGAGTCCATCTGATAAGAC B ? 3 'polypeptide(L)' no no ;EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG ; ;EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DC n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DT n 1 10 DC n 1 11 DA n 1 12 DG n 1 13 DA n 1 14 DT n 1 15 DG n 1 16 DG n 1 17 DA n 1 18 DC n 1 19 DT n 1 20 DC n 2 1 DA n 2 2 DA n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DC n 2 12 DT n 2 13 DG n 2 14 DA n 2 15 DT n 2 16 DA n 2 17 DA n 2 18 DG n 2 19 DA n 2 20 DC n 3 1 GLU n 3 2 ALA n 3 3 ARG n 3 4 GLU n 3 5 CYS n 3 6 VAL n 3 7 ASN n 3 8 CYS n 3 9 GLY n 3 10 ALA n 3 11 THR n 3 12 ALA n 3 13 THR n 3 14 PRO n 3 15 LEU n 3 16 TRP n 3 17 ARG n 3 18 ARG n 3 19 ASP n 3 20 ARG n 3 21 THR n 3 22 GLY n 3 23 HIS n 3 24 TYR n 3 25 LEU n 3 26 CYS n 3 27 ASN n 3 28 ALA n 3 29 CYS n 3 30 GLY n 3 31 LEU n 3 32 TYR n 3 33 HIS n 3 34 LYS n 3 35 MET n 3 36 ASN n 3 37 GLY n 3 38 GLN n 3 39 ASN n 3 40 ARG n 3 41 PRO n 3 42 LEU n 3 43 ILE n 3 44 ARG n 3 45 PRO n 3 46 LYS n 3 47 LYS n 3 48 ARG n 3 49 MET n 3 50 ILE n 3 51 VAL n 3 52 SER n 3 53 LYS n 3 54 ARG n 3 55 ALA n 3 56 GLY n 3 57 THR n 3 58 GLN n 3 59 CYS n 3 60 THR n 3 61 ASN n 3 62 CYS n 3 63 GLN n 3 64 THR n 3 65 THR n 3 66 THR n 3 67 THR n 3 68 THR n 3 69 LEU n 3 70 TRP n 3 71 ARG n 3 72 ARG n 3 73 ASN n 3 74 ALA n 3 75 SER n 3 76 GLY n 3 77 ASP n 3 78 PRO n 3 79 VAL n 3 80 CYS n 3 81 ASN n 3 82 ALA n 3 83 CYS n 3 84 GLY n 3 85 LEU n 3 86 TYR n 3 87 PHE n 3 88 LYS n 3 89 LEU n 3 90 HIS n 3 91 GLN n 3 92 VAL n 3 93 ASN n 3 94 ARG n 3 95 PRO n 3 96 LEU n 3 97 THR n 3 98 MET n 3 99 ARG n 3 100 LYS n 3 101 ASP n 3 102 GLY n 3 103 ILE n 3 104 GLN n 3 105 THR n 3 106 ARG n 3 107 ASN n 3 108 ARG n 3 109 LYS n 3 110 ALA n 3 111 SER n 3 112 GLY n 3 113 LYS n 3 114 GLY n 3 115 LYS n 3 116 LYS n 3 117 LYS n 3 118 ARG n 3 119 GLY n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Gata1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 'This sequence occurs naturally in humans' 2 1 sample ? ? 'synthetic construct' ? 32630 'This sequence occurs naturally in humans' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3VD6 3VD6 1 TTGTCTTATCAGATGGACTC 1 ? 2 PDB 3VD6 3VD6 2 AAGAGTCCATCTGATAAGAC 21 ? 3 UNP GATA1_MOUSE P17679 3 ;EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG ; 200 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VD6 A 1 ? 20 ? 3VD6 1 ? 20 ? 1 20 2 2 3VD6 B 1 ? 20 ? 3VD6 21 ? 40 ? 21 40 3 3 3VD6 C 1 ? 119 ? P17679 200 ? 318 ? 200 318 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3VD6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 1.890 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 51.82 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M ammonium acetate, 0.1M BISTRIS, 25% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2011-09-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'CONFOCAL MAXFLUX MIRRORS' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3VD6 _reflns.d_resolution_high 1.980 _reflns.d_resolution_low 15.000 _reflns.number_obs 18281 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 19.100 _reflns.pdbx_chi_squared 1.048 _reflns.pdbx_redundancy 3.500 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 18281 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 53.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.980 2.010 ? ? ? ? 0.580 ? ? 1.094 3.400 ? ? ? 893 ? ? ? ? 99.900 ? ? 1 1 2.010 2.050 ? ? ? ? 0.509 ? ? 1.084 3.400 ? ? ? 910 ? ? ? ? 99.500 ? ? 2 1 2.050 2.090 ? ? ? ? 0.477 ? ? 1.071 3.400 ? ? ? 904 ? ? ? ? 98.500 ? ? 3 1 2.090 2.130 ? ? ? ? 0.410 ? ? 1.074 3.400 ? ? ? 888 ? ? ? ? 100.000 ? ? 4 1 2.130 2.180 ? ? ? ? 0.355 ? ? 1.063 3.300 ? ? ? 929 ? ? ? ? 99.800 ? ? 5 1 2.180 2.230 ? ? ? ? 0.305 ? ? 1.090 3.400 ? ? ? 880 ? ? ? ? 99.400 ? ? 6 1 2.230 2.280 ? ? ? ? 0.267 ? ? 1.044 3.400 ? ? ? 920 ? ? ? ? 99.900 ? ? 7 1 2.280 2.350 ? ? ? ? 0.246 ? ? 1.072 3.400 ? ? ? 923 ? ? ? ? 99.800 ? ? 8 1 2.350 2.420 ? ? ? ? 0.174 ? ? 1.079 3.400 ? ? ? 886 ? ? ? ? 99.800 ? ? 9 1 2.420 2.490 ? ? ? ? 0.176 ? ? 1.073 3.400 ? ? ? 934 ? ? ? ? 100.000 ? ? 10 1 2.490 2.580 ? ? ? ? 0.144 ? ? 1.082 3.500 ? ? ? 895 ? ? ? ? 100.000 ? ? 11 1 2.580 2.680 ? ? ? ? 0.119 ? ? 0.972 3.500 ? ? ? 938 ? ? ? ? 100.000 ? ? 12 1 2.680 2.810 ? ? ? ? 0.092 ? ? 1.099 3.600 ? ? ? 917 ? ? ? ? 99.900 ? ? 13 1 2.810 2.950 ? ? ? ? 0.079 ? ? 1.072 3.600 ? ? ? 904 ? ? ? ? 100.000 ? ? 14 1 2.950 3.140 ? ? ? ? 0.062 ? ? 0.981 3.600 ? ? ? 931 ? ? ? ? 99.700 ? ? 15 1 3.140 3.380 ? ? ? ? 0.047 ? ? 1.082 3.600 ? ? ? 872 ? ? ? ? 95.200 ? ? 16 1 3.380 3.710 ? ? ? ? 0.040 ? ? 0.967 3.700 ? ? ? 928 ? ? ? ? 99.800 ? ? 17 1 3.710 4.240 ? ? ? ? 0.037 ? ? 1.059 3.700 ? ? ? 918 ? ? ? ? 99.100 ? ? 18 1 4.240 5.300 ? ? ? ? 0.037 ? ? 1.029 3.600 ? ? ? 936 ? ? ? ? 99.500 ? ? 19 1 5.300 15.000 ? ? ? ? 0.035 ? ? 0.920 3.600 ? ? ? 975 ? ? ? ? 99.900 ? ? 20 1 # _refine.entry_id 3VD6 _refine.ls_d_res_high 1.9800 _refine.ls_d_res_low 14.9000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8300 _refine.ls_number_reflns_obs 18203 _refine.ls_number_reflns_all 18203 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2196 _refine.ls_R_factor_R_work 0.2182 _refine.ls_wR_factor_R_work 0.2401 _refine.ls_R_factor_R_free 0.2468 _refine.ls_wR_factor_R_free 0.2715 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 887 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 55.616 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.9100 _refine.aniso_B[2][2] 0.2700 _refine.aniso_B[3][3] 1.6900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -3.2200 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI 0.1751 _refine.overall_SU_R_free 0.1551 _refine.pdbx_overall_ESU_R 0.1750 _refine.pdbx_overall_ESU_R_Free 0.1550 _refine.overall_SU_ML 0.1360 _refine.overall_SU_B 11.0890 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3DFX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7744 _refine.B_iso_max 72.560 _refine.B_iso_min 15.850 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 756 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1670 _refine_hist.d_res_high 1.9800 _refine_hist.d_res_low 14.9000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1690 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 907 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2455 1.080 2.540 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2229 0.935 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 96 3.986 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39 31.671 22.051 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 132 10.097 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 9.388 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 272 0.044 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1293 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 248 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 481 0.917 2.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 195 0.179 2.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 770 1.655 3.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1209 2.029 4.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 1684 2.844 6.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9790 _refine_ls_shell.d_res_low 2.0300 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.7400 _refine_ls_shell.number_reflns_R_work 1200 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3760 _refine_ls_shell.R_factor_R_free 0.4000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1258 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VD6 _struct.title 'Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P21 Crystal Form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VD6 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 26 ? GLY C 37 ? CYS C 225 GLY C 236 1 ? 12 HELX_P HELX_P2 2 CYS C 80 ? GLN C 91 ? CYS C 279 GLN C 290 1 ? 12 HELX_P HELX_P3 3 PRO C 95 ? ARG C 99 ? PRO C 294 ARG C 298 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 5 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 204 C ZN 500 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc2 metalc ? ? C CYS 8 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 207 C ZN 500 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc3 metalc ? ? C ASP 19 OD2 ? ? ? 1_555 G ZN . ZN ? ? C ASP 218 C ZN 502 1_555 ? ? ? ? ? ? ? 1.791 ? ? metalc4 metalc ? ? C HIS 23 ND1 ? ? ? 1_555 G ZN . ZN ? ? C HIS 222 C ZN 502 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc5 metalc ? ? C CYS 26 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 225 C ZN 500 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc6 metalc ? ? C CYS 29 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 228 C ZN 500 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc7 metalc ? ? C CYS 59 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 258 C ZN 501 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc8 metalc ? ? C CYS 62 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 261 C ZN 501 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc9 metalc ? ? C CYS 80 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 279 C ZN 501 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc10 metalc ? ? C CYS 83 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 282 C ZN 501 1_555 ? ? ? ? ? ? ? 2.243 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 20 N3 ? ? A DG 3 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 20 O2 ? ? A DG 3 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 20 N4 ? ? A DG 3 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? A DT 4 B DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? A DT 4 B DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 18 N1 ? ? A DC 5 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 18 O6 ? ? A DC 5 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 18 N2 ? ? A DC 5 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 17 N1 ? ? A DT 6 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 17 N6 ? ? A DT 6 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 16 N1 ? ? A DT 7 B DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 16 N6 ? ? A DT 7 B DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? A DA 8 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? A DA 8 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? A DT 9 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? A DT 9 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 10 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 10 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 10 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 11 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 11 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 12 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 12 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 12 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 13 B DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 13 B DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 14 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 14 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 15 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 15 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 15 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 16 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 16 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 16 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 17 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 17 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 18 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 18 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 18 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 19 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 19 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 20 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 20 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 20 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 20 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 20 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 20 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG C 17 ? ARG C 18 ? ARG C 216 ARG C 217 A 2 TYR C 24 ? LEU C 25 ? TYR C 223 LEU C 224 B 1 ARG C 71 ? ARG C 72 ? ARG C 270 ARG C 271 B 2 PRO C 78 ? VAL C 79 ? PRO C 277 VAL C 278 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG C 17 ? N ARG C 216 O LEU C 25 ? O LEU C 224 B 1 2 N ARG C 71 ? N ARG C 270 O VAL C 79 ? O VAL C 278 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 101 ? 3 'BINDING SITE FOR RESIDUE ACT A 101' AC2 Software C ZN 500 ? 4 'BINDING SITE FOR RESIDUE ZN C 500' AC3 Software C ZN 501 ? 4 'BINDING SITE FOR RESIDUE ZN C 501' AC4 Software C ZN 502 ? 2 'BINDING SITE FOR RESIDUE ZN C 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DT A 9 ? DT A 9 . ? 1_555 ? 2 AC1 3 DC A 10 ? DC A 10 . ? 1_555 ? 3 AC1 3 ARG C 3 ? ARG C 202 . ? 1_555 ? 4 AC2 4 CYS C 5 ? CYS C 204 . ? 1_555 ? 5 AC2 4 CYS C 8 ? CYS C 207 . ? 1_555 ? 6 AC2 4 CYS C 26 ? CYS C 225 . ? 1_555 ? 7 AC2 4 CYS C 29 ? CYS C 228 . ? 1_555 ? 8 AC3 4 CYS C 59 ? CYS C 258 . ? 1_555 ? 9 AC3 4 CYS C 62 ? CYS C 261 . ? 1_555 ? 10 AC3 4 CYS C 80 ? CYS C 279 . ? 1_555 ? 11 AC3 4 CYS C 83 ? CYS C 282 . ? 1_555 ? 12 AC4 2 ASP C 19 ? ASP C 218 . ? 1_555 ? 13 AC4 2 HIS C 23 ? HIS C 222 . ? 1_555 ? # _atom_sites.entry_id 3VD6 _atom_sites.fract_transf_matrix[1][1] 0.018406 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002754 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026737 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015441 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DA 17 17 17 DA DA A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DC 20 20 20 DC DC A . n B 2 1 DA 1 21 21 DA DA B . n B 2 2 DA 2 22 22 DA DA B . n B 2 3 DG 3 23 23 DG DG B . n B 2 4 DA 4 24 24 DA DA B . n B 2 5 DG 5 25 25 DG DG B . n B 2 6 DT 6 26 26 DT DT B . n B 2 7 DC 7 27 27 DC DC B . n B 2 8 DC 8 28 28 DC DC B . n B 2 9 DA 9 29 29 DA DA B . n B 2 10 DT 10 30 30 DT DT B . n B 2 11 DC 11 31 31 DC DC B . n B 2 12 DT 12 32 32 DT DT B . n B 2 13 DG 13 33 33 DG DG B . n B 2 14 DA 14 34 34 DA DA B . n B 2 15 DT 15 35 35 DT DT B . n B 2 16 DA 16 36 36 DA DA B . n B 2 17 DA 17 37 37 DA DA B . n B 2 18 DG 18 38 38 DG DG B . n B 2 19 DA 19 39 39 DA DA B . n B 2 20 DC 20 40 40 DC DC B . n C 3 1 GLU 1 200 ? ? ? C . n C 3 2 ALA 2 201 201 ALA ALA C . n C 3 3 ARG 3 202 202 ARG ARG C . n C 3 4 GLU 4 203 203 GLU GLU C . n C 3 5 CYS 5 204 204 CYS CYS C . n C 3 6 VAL 6 205 205 VAL VAL C . n C 3 7 ASN 7 206 206 ASN ASN C . n C 3 8 CYS 8 207 207 CYS CYS C . n C 3 9 GLY 9 208 208 GLY GLY C . n C 3 10 ALA 10 209 209 ALA ALA C . n C 3 11 THR 11 210 210 THR THR C . n C 3 12 ALA 12 211 211 ALA ALA C . n C 3 13 THR 13 212 212 THR THR C . n C 3 14 PRO 14 213 213 PRO PRO C . n C 3 15 LEU 15 214 214 LEU LEU C . n C 3 16 TRP 16 215 215 TRP TRP C . n C 3 17 ARG 17 216 216 ARG ARG C . n C 3 18 ARG 18 217 217 ARG ARG C . n C 3 19 ASP 19 218 218 ASP ASP C . n C 3 20 ARG 20 219 219 ARG ARG C . n C 3 21 THR 21 220 220 THR THR C . n C 3 22 GLY 22 221 221 GLY GLY C . n C 3 23 HIS 23 222 222 HIS HIS C . n C 3 24 TYR 24 223 223 TYR TYR C . n C 3 25 LEU 25 224 224 LEU LEU C . n C 3 26 CYS 26 225 225 CYS CYS C . n C 3 27 ASN 27 226 226 ASN ASN C . n C 3 28 ALA 28 227 227 ALA ALA C . n C 3 29 CYS 29 228 228 CYS CYS C . n C 3 30 GLY 30 229 229 GLY GLY C . n C 3 31 LEU 31 230 230 LEU LEU C . n C 3 32 TYR 32 231 231 TYR TYR C . n C 3 33 HIS 33 232 232 HIS HIS C . n C 3 34 LYS 34 233 233 LYS LYS C . n C 3 35 MET 35 234 234 MET MET C . n C 3 36 ASN 36 235 235 ASN ASN C . n C 3 37 GLY 37 236 236 GLY GLY C . n C 3 38 GLN 38 237 237 GLN GLN C . n C 3 39 ASN 39 238 238 ASN ASN C . n C 3 40 ARG 40 239 239 ARG ARG C . n C 3 41 PRO 41 240 240 PRO PRO C . n C 3 42 LEU 42 241 241 LEU LEU C . n C 3 43 ILE 43 242 ? ? ? C . n C 3 44 ARG 44 243 ? ? ? C . n C 3 45 PRO 45 244 ? ? ? C . n C 3 46 LYS 46 245 ? ? ? C . n C 3 47 LYS 47 246 ? ? ? C . n C 3 48 ARG 48 247 ? ? ? C . n C 3 49 MET 49 248 ? ? ? C . n C 3 50 ILE 50 249 ? ? ? C . n C 3 51 VAL 51 250 ? ? ? C . n C 3 52 SER 52 251 ? ? ? C . n C 3 53 LYS 53 252 ? ? ? C . n C 3 54 ARG 54 253 ? ? ? C . n C 3 55 ALA 55 254 ? ? ? C . n C 3 56 GLY 56 255 ? ? ? C . n C 3 57 THR 57 256 256 THR THR C . n C 3 58 GLN 58 257 257 GLN GLN C . n C 3 59 CYS 59 258 258 CYS CYS C . n C 3 60 THR 60 259 259 THR THR C . n C 3 61 ASN 61 260 260 ASN ASN C . n C 3 62 CYS 62 261 261 CYS CYS C . n C 3 63 GLN 63 262 262 GLN GLN C . n C 3 64 THR 64 263 263 THR THR C . n C 3 65 THR 65 264 264 THR THR C . n C 3 66 THR 66 265 265 THR THR C . n C 3 67 THR 67 266 266 THR THR C . n C 3 68 THR 68 267 267 THR THR C . n C 3 69 LEU 69 268 268 LEU LEU C . n C 3 70 TRP 70 269 269 TRP TRP C . n C 3 71 ARG 71 270 270 ARG ARG C . n C 3 72 ARG 72 271 271 ARG ARG C . n C 3 73 ASN 73 272 272 ASN ASN C . n C 3 74 ALA 74 273 273 ALA ALA C . n C 3 75 SER 75 274 274 SER SER C . n C 3 76 GLY 76 275 275 GLY GLY C . n C 3 77 ASP 77 276 276 ASP ASP C . n C 3 78 PRO 78 277 277 PRO PRO C . n C 3 79 VAL 79 278 278 VAL VAL C . n C 3 80 CYS 80 279 279 CYS CYS C . n C 3 81 ASN 81 280 280 ASN ASN C . n C 3 82 ALA 82 281 281 ALA ALA C . n C 3 83 CYS 83 282 282 CYS CYS C . n C 3 84 GLY 84 283 283 GLY GLY C . n C 3 85 LEU 85 284 284 LEU LEU C . n C 3 86 TYR 86 285 285 TYR TYR C . n C 3 87 PHE 87 286 286 PHE PHE C . n C 3 88 LYS 88 287 287 LYS LYS C . n C 3 89 LEU 89 288 288 LEU LEU C . n C 3 90 HIS 90 289 289 HIS HIS C . n C 3 91 GLN 91 290 290 GLN GLN C . n C 3 92 VAL 92 291 291 VAL VAL C . n C 3 93 ASN 93 292 292 ASN ASN C . n C 3 94 ARG 94 293 293 ARG ARG C . n C 3 95 PRO 95 294 294 PRO PRO C . n C 3 96 LEU 96 295 295 LEU LEU C . n C 3 97 THR 97 296 296 THR THR C . n C 3 98 MET 98 297 297 MET MET C . n C 3 99 ARG 99 298 298 ARG ARG C . n C 3 100 LYS 100 299 299 LYS LYS C . n C 3 101 ASP 101 300 300 ASP ASP C . n C 3 102 GLY 102 301 301 GLY GLY C . n C 3 103 ILE 103 302 302 ILE ILE C . n C 3 104 GLN 104 303 303 GLN GLN C . n C 3 105 THR 105 304 304 THR THR C . n C 3 106 ARG 106 305 305 ARG ARG C . n C 3 107 ASN 107 306 306 ASN ASN C . n C 3 108 ARG 108 307 307 ARG ARG C . n C 3 109 LYS 109 308 308 LYS LYS C . n C 3 110 ALA 110 309 309 ALA ALA C . n C 3 111 SER 111 310 310 SER SER C . n C 3 112 GLY 112 311 ? ? ? C . n C 3 113 LYS 113 312 ? ? ? C . n C 3 114 GLY 114 313 ? ? ? C . n C 3 115 LYS 115 314 ? ? ? C . n C 3 116 LYS 116 315 ? ? ? C . n C 3 117 LYS 117 316 ? ? ? C . n C 3 118 ARG 118 317 ? ? ? C . n C 3 119 GLY 119 318 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT 1 101 1 ACT ACT A . E 5 ZN 1 500 500 ZN ZN C . F 5 ZN 1 501 501 ZN ZN C . G 5 ZN 1 502 502 ZN ZN C . H 6 HOH 1 201 5 HOH HOH A . H 6 HOH 2 202 9 HOH HOH A . H 6 HOH 3 203 11 HOH HOH A . H 6 HOH 4 204 17 HOH HOH A . H 6 HOH 5 205 18 HOH HOH A . H 6 HOH 6 206 19 HOH HOH A . H 6 HOH 7 207 21 HOH HOH A . H 6 HOH 8 208 29 HOH HOH A . H 6 HOH 9 209 32 HOH HOH A . H 6 HOH 10 210 35 HOH HOH A . H 6 HOH 11 211 39 HOH HOH A . H 6 HOH 12 212 40 HOH HOH A . H 6 HOH 13 213 45 HOH HOH A . H 6 HOH 14 214 48 HOH HOH A . H 6 HOH 15 215 49 HOH HOH A . H 6 HOH 16 216 59 HOH HOH A . H 6 HOH 17 217 75 HOH HOH A . H 6 HOH 18 218 76 HOH HOH A . H 6 HOH 19 219 80 HOH HOH A . H 6 HOH 20 220 89 HOH HOH A . H 6 HOH 21 221 90 HOH HOH A . H 6 HOH 22 222 92 HOH HOH A . I 6 HOH 1 101 3 HOH HOH B . I 6 HOH 2 102 4 HOH HOH B . I 6 HOH 3 103 6 HOH HOH B . I 6 HOH 4 104 27 HOH HOH B . I 6 HOH 5 105 37 HOH HOH B . I 6 HOH 6 106 38 HOH HOH B . I 6 HOH 7 107 47 HOH HOH B . I 6 HOH 8 108 54 HOH HOH B . I 6 HOH 9 109 55 HOH HOH B . I 6 HOH 10 110 60 HOH HOH B . I 6 HOH 11 111 63 HOH HOH B . I 6 HOH 12 112 64 HOH HOH B . I 6 HOH 13 113 69 HOH HOH B . I 6 HOH 14 114 70 HOH HOH B . I 6 HOH 15 115 78 HOH HOH B . I 6 HOH 16 116 84 HOH HOH B . I 6 HOH 17 117 86 HOH HOH B . I 6 HOH 18 118 87 HOH HOH B . I 6 HOH 19 119 88 HOH HOH B . J 6 HOH 1 601 24 HOH HOH C . J 6 HOH 2 602 28 HOH HOH C . J 6 HOH 3 603 1 HOH HOH C . J 6 HOH 4 604 2 HOH HOH C . J 6 HOH 5 605 7 HOH HOH C . J 6 HOH 6 606 8 HOH HOH C . J 6 HOH 7 607 10 HOH HOH C . J 6 HOH 8 608 12 HOH HOH C . J 6 HOH 9 609 13 HOH HOH C . J 6 HOH 10 610 14 HOH HOH C . J 6 HOH 11 611 15 HOH HOH C . J 6 HOH 12 612 16 HOH HOH C . J 6 HOH 13 613 20 HOH HOH C . J 6 HOH 14 614 22 HOH HOH C . J 6 HOH 15 615 23 HOH HOH C . J 6 HOH 16 616 25 HOH HOH C . J 6 HOH 17 617 26 HOH HOH C . J 6 HOH 18 618 30 HOH HOH C . J 6 HOH 19 619 31 HOH HOH C . J 6 HOH 20 620 33 HOH HOH C . J 6 HOH 21 621 34 HOH HOH C . J 6 HOH 22 622 36 HOH HOH C . J 6 HOH 23 623 41 HOH HOH C . J 6 HOH 24 624 42 HOH HOH C . J 6 HOH 25 625 43 HOH HOH C . J 6 HOH 26 626 44 HOH HOH C . J 6 HOH 27 627 46 HOH HOH C . J 6 HOH 28 628 50 HOH HOH C . J 6 HOH 29 629 51 HOH HOH C . J 6 HOH 30 630 52 HOH HOH C . J 6 HOH 31 631 53 HOH HOH C . J 6 HOH 32 632 56 HOH HOH C . J 6 HOH 33 633 57 HOH HOH C . J 6 HOH 34 634 58 HOH HOH C . J 6 HOH 35 635 61 HOH HOH C . J 6 HOH 36 636 62 HOH HOH C . J 6 HOH 37 637 65 HOH HOH C . J 6 HOH 38 638 66 HOH HOH C . J 6 HOH 39 639 67 HOH HOH C . J 6 HOH 40 640 68 HOH HOH C . J 6 HOH 41 641 71 HOH HOH C . J 6 HOH 42 642 72 HOH HOH C . J 6 HOH 43 643 73 HOH HOH C . J 6 HOH 44 644 74 HOH HOH C . J 6 HOH 45 645 77 HOH HOH C . J 6 HOH 46 646 79 HOH HOH C . J 6 HOH 47 647 81 HOH HOH C . J 6 HOH 48 648 82 HOH HOH C . J 6 HOH 49 649 83 HOH HOH C . J 6 HOH 50 650 85 HOH HOH C . J 6 HOH 51 651 91 HOH HOH C . J 6 HOH 52 652 93 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5640 ? 1 MORE -35 ? 1 'SSA (A^2)' 11660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 5 ? C CYS 204 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 8 ? C CYS 207 ? 1_555 109.0 ? 2 SG ? C CYS 5 ? C CYS 204 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 26 ? C CYS 225 ? 1_555 117.8 ? 3 SG ? C CYS 8 ? C CYS 207 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 26 ? C CYS 225 ? 1_555 111.7 ? 4 SG ? C CYS 5 ? C CYS 204 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 29 ? C CYS 228 ? 1_555 107.6 ? 5 SG ? C CYS 8 ? C CYS 207 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 29 ? C CYS 228 ? 1_555 109.6 ? 6 SG ? C CYS 26 ? C CYS 225 ? 1_555 ZN ? E ZN . ? C ZN 500 ? 1_555 SG ? C CYS 29 ? C CYS 228 ? 1_555 100.4 ? 7 OD2 ? C ASP 19 ? C ASP 218 ? 1_555 ZN ? G ZN . ? C ZN 502 ? 1_555 ND1 ? C HIS 23 ? C HIS 222 ? 1_555 119.9 ? 8 SG ? C CYS 59 ? C CYS 258 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 62 ? C CYS 261 ? 1_555 107.9 ? 9 SG ? C CYS 59 ? C CYS 258 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 80 ? C CYS 279 ? 1_555 114.3 ? 10 SG ? C CYS 62 ? C CYS 261 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 80 ? C CYS 279 ? 1_555 115.9 ? 11 SG ? C CYS 59 ? C CYS 258 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 83 ? C CYS 282 ? 1_555 104.7 ? 12 SG ? C CYS 62 ? C CYS 261 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 83 ? C CYS 282 ? 1_555 109.9 ? 13 SG ? C CYS 80 ? C CYS 279 ? 1_555 ZN ? F ZN . ? C ZN 501 ? 1_555 SG ? C CYS 83 ? C CYS 282 ? 1_555 103.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2023-05-24 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entity_src_syn 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site 8 3 'Structure model' chem_comp_atom 9 3 'Structure model' chem_comp_bond 10 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' 15 2 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 16 2 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 24 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 25 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 26 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 2 'Structure model' '_pdbx_struct_conn_angle.value' 30 2 'Structure model' '_struct_conn.pdbx_dist_value' 31 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 16.7333 -0.0143 16.3636 0.1266 0.1049 0.0463 0.0227 0.0457 -0.0228 4.9846 2.9715 3.0370 -1.1379 0.9964 -0.1438 0.0406 -0.0862 0.0455 0.0754 -0.2549 0.1278 -0.1552 0.1146 0.1688 'X-RAY DIFFRACTION' 2 ? refined 23.1923 4.5291 27.5810 0.1546 0.1724 0.0403 -0.0237 -0.0148 -0.0220 3.2619 5.0310 4.9215 -1.2697 0.9020 -0.8592 -0.0459 -0.0151 0.0610 -0.2644 -0.0059 -0.2997 0.3362 -0.1926 0.3926 'X-RAY DIFFRACTION' 3 ? refined 10.6540 8.5691 6.1156 0.2220 0.1210 0.1186 0.0176 -0.0653 0.0445 4.7485 4.0336 6.9810 -0.8101 1.5839 1.4645 -0.1629 -0.1471 0.3100 0.6763 0.4810 0.1271 -0.6442 -0.4617 0.3481 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 20 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 B 21 B 40 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 C 201 C 241 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 C 500 C 500 ? . . . . ? 'X-RAY DIFFRACTION' 5 2 C 502 C 502 ? . . . . ? 'X-RAY DIFFRACTION' 6 3 C 256 C 309 ? . . . . ? 'X-RAY DIFFRACTION' 7 3 C 501 C 501 ? . . . . ? # _pdbx_phasing_MR.entry_id 3VD6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 51.130 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 38.450 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 38.450 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.43 108.30 3.13 0.30 N 2 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.17 108.30 1.87 0.30 N 3 1 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 111.83 108.30 3.53 0.30 N 4 1 "O4'" B DC 28 ? ? "C1'" B DC 28 ? ? N1 B DC 28 ? ? 110.92 108.30 2.62 0.30 N 5 1 "O4'" B DT 30 ? ? "C1'" B DT 30 ? ? N1 B DT 30 ? ? 110.45 108.30 2.15 0.30 N 6 1 "O4'" B DG 38 ? ? "C1'" B DG 38 ? ? N9 B DG 38 ? ? 111.89 108.30 3.59 0.30 N 7 1 "O4'" B DC 40 ? ? "C1'" B DC 40 ? ? N1 B DC 40 ? ? 110.21 108.30 1.91 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLU 200 ? C GLU 1 2 1 Y 1 C ILE 242 ? C ILE 43 3 1 Y 1 C ARG 243 ? C ARG 44 4 1 Y 1 C PRO 244 ? C PRO 45 5 1 Y 1 C LYS 245 ? C LYS 46 6 1 Y 1 C LYS 246 ? C LYS 47 7 1 Y 1 C ARG 247 ? C ARG 48 8 1 Y 1 C MET 248 ? C MET 49 9 1 Y 1 C ILE 249 ? C ILE 50 10 1 Y 1 C VAL 250 ? C VAL 51 11 1 Y 1 C SER 251 ? C SER 52 12 1 Y 1 C LYS 252 ? C LYS 53 13 1 Y 1 C ARG 253 ? C ARG 54 14 1 Y 1 C ALA 254 ? C ALA 55 15 1 Y 1 C GLY 255 ? C GLY 56 16 1 Y 1 C GLY 311 ? C GLY 112 17 1 Y 1 C LYS 312 ? C LYS 113 18 1 Y 1 C GLY 313 ? C GLY 114 19 1 Y 1 C LYS 314 ? C LYS 115 20 1 Y 1 C LYS 315 ? C LYS 116 21 1 Y 1 C LYS 316 ? C LYS 117 22 1 Y 1 C ARG 317 ? C ARG 118 23 1 Y 1 C GLY 318 ? C GLY 119 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 DA OP3 O N N 95 DA P P N N 96 DA OP1 O N N 97 DA OP2 O N N 98 DA "O5'" O N N 99 DA "C5'" C N N 100 DA "C4'" C N R 101 DA "O4'" O N N 102 DA "C3'" C N S 103 DA "O3'" O N N 104 DA "C2'" C N N 105 DA "C1'" C N R 106 DA N9 N Y N 107 DA C8 C Y N 108 DA N7 N Y N 109 DA C5 C Y N 110 DA C6 C Y N 111 DA N6 N N N 112 DA N1 N Y N 113 DA C2 C Y N 114 DA N3 N Y N 115 DA C4 C Y N 116 DA HOP3 H N N 117 DA HOP2 H N N 118 DA "H5'" H N N 119 DA "H5''" H N N 120 DA "H4'" H N N 121 DA "H3'" H N N 122 DA "HO3'" H N N 123 DA "H2'" H N N 124 DA "H2''" H N N 125 DA "H1'" H N N 126 DA H8 H N N 127 DA H61 H N N 128 DA H62 H N N 129 DA H2 H N N 130 DC OP3 O N N 131 DC P P N N 132 DC OP1 O N N 133 DC OP2 O N N 134 DC "O5'" O N N 135 DC "C5'" C N N 136 DC "C4'" C N R 137 DC "O4'" O N N 138 DC "C3'" C N S 139 DC "O3'" O N N 140 DC "C2'" C N N 141 DC "C1'" C N R 142 DC N1 N N N 143 DC C2 C N N 144 DC O2 O N N 145 DC N3 N N N 146 DC C4 C N N 147 DC N4 N N N 148 DC C5 C N N 149 DC C6 C N N 150 DC HOP3 H N N 151 DC HOP2 H N N 152 DC "H5'" H N N 153 DC "H5''" H N N 154 DC "H4'" H N N 155 DC "H3'" H N N 156 DC "HO3'" H N N 157 DC "H2'" H N N 158 DC "H2''" H N N 159 DC "H1'" H N N 160 DC H41 H N N 161 DC H42 H N N 162 DC H5 H N N 163 DC H6 H N N 164 DG OP3 O N N 165 DG P P N N 166 DG OP1 O N N 167 DG OP2 O N N 168 DG "O5'" O N N 169 DG "C5'" C N N 170 DG "C4'" C N R 171 DG "O4'" O N N 172 DG "C3'" C N S 173 DG "O3'" O N N 174 DG "C2'" C N N 175 DG "C1'" C N R 176 DG N9 N Y N 177 DG C8 C Y N 178 DG N7 N Y N 179 DG C5 C Y N 180 DG C6 C N N 181 DG O6 O N N 182 DG N1 N N N 183 DG C2 C N N 184 DG N2 N N N 185 DG N3 N N N 186 DG C4 C Y N 187 DG HOP3 H N N 188 DG HOP2 H N N 189 DG "H5'" H N N 190 DG "H5''" H N N 191 DG "H4'" H N N 192 DG "H3'" H N N 193 DG "HO3'" H N N 194 DG "H2'" H N N 195 DG "H2''" H N N 196 DG "H1'" H N N 197 DG H8 H N N 198 DG H1 H N N 199 DG H21 H N N 200 DG H22 H N N 201 DT OP3 O N N 202 DT P P N N 203 DT OP1 O N N 204 DT OP2 O N N 205 DT "O5'" O N N 206 DT "C5'" C N N 207 DT "C4'" C N R 208 DT "O4'" O N N 209 DT "C3'" C N S 210 DT "O3'" O N N 211 DT "C2'" C N N 212 DT "C1'" C N R 213 DT N1 N N N 214 DT C2 C N N 215 DT O2 O N N 216 DT N3 N N N 217 DT C4 C N N 218 DT O4 O N N 219 DT C5 C N N 220 DT C7 C N N 221 DT C6 C N N 222 DT HOP3 H N N 223 DT HOP2 H N N 224 DT "H5'" H N N 225 DT "H5''" H N N 226 DT "H4'" H N N 227 DT "H3'" H N N 228 DT "HO3'" H N N 229 DT "H2'" H N N 230 DT "H2''" H N N 231 DT "H1'" H N N 232 DT H3 H N N 233 DT H71 H N N 234 DT H72 H N N 235 DT H73 H N N 236 DT H6 H N N 237 GLN N N N N 238 GLN CA C N S 239 GLN C C N N 240 GLN O O N N 241 GLN CB C N N 242 GLN CG C N N 243 GLN CD C N N 244 GLN OE1 O N N 245 GLN NE2 N N N 246 GLN OXT O N N 247 GLN H H N N 248 GLN H2 H N N 249 GLN HA H N N 250 GLN HB2 H N N 251 GLN HB3 H N N 252 GLN HG2 H N N 253 GLN HG3 H N N 254 GLN HE21 H N N 255 GLN HE22 H N N 256 GLN HXT H N N 257 GLU N N N N 258 GLU CA C N S 259 GLU C C N N 260 GLU O O N N 261 GLU CB C N N 262 GLU CG C N N 263 GLU CD C N N 264 GLU OE1 O N N 265 GLU OE2 O N N 266 GLU OXT O N N 267 GLU H H N N 268 GLU H2 H N N 269 GLU HA H N N 270 GLU HB2 H N N 271 GLU HB3 H N N 272 GLU HG2 H N N 273 GLU HG3 H N N 274 GLU HE2 H N N 275 GLU HXT H N N 276 GLY N N N N 277 GLY CA C N N 278 GLY C C N N 279 GLY O O N N 280 GLY OXT O N N 281 GLY H H N N 282 GLY H2 H N N 283 GLY HA2 H N N 284 GLY HA3 H N N 285 GLY HXT H N N 286 HIS N N N N 287 HIS CA C N S 288 HIS C C N N 289 HIS O O N N 290 HIS CB C N N 291 HIS CG C Y N 292 HIS ND1 N Y N 293 HIS CD2 C Y N 294 HIS CE1 C Y N 295 HIS NE2 N Y N 296 HIS OXT O N N 297 HIS H H N N 298 HIS H2 H N N 299 HIS HA H N N 300 HIS HB2 H N N 301 HIS HB3 H N N 302 HIS HD1 H N N 303 HIS HD2 H N N 304 HIS HE1 H N N 305 HIS HE2 H N N 306 HIS HXT H N N 307 HOH O O N N 308 HOH H1 H N N 309 HOH H2 H N N 310 ILE N N N N 311 ILE CA C N S 312 ILE C C N N 313 ILE O O N N 314 ILE CB C N S 315 ILE CG1 C N N 316 ILE CG2 C N N 317 ILE CD1 C N N 318 ILE OXT O N N 319 ILE H H N N 320 ILE H2 H N N 321 ILE HA H N N 322 ILE HB H N N 323 ILE HG12 H N N 324 ILE HG13 H N N 325 ILE HG21 H N N 326 ILE HG22 H N N 327 ILE HG23 H N N 328 ILE HD11 H N N 329 ILE HD12 H N N 330 ILE HD13 H N N 331 ILE HXT H N N 332 LEU N N N N 333 LEU CA C N S 334 LEU C C N N 335 LEU O O N N 336 LEU CB C N N 337 LEU CG C N N 338 LEU CD1 C N N 339 LEU CD2 C N N 340 LEU OXT O N N 341 LEU H H N N 342 LEU H2 H N N 343 LEU HA H N N 344 LEU HB2 H N N 345 LEU HB3 H N N 346 LEU HG H N N 347 LEU HD11 H N N 348 LEU HD12 H N N 349 LEU HD13 H N N 350 LEU HD21 H N N 351 LEU HD22 H N N 352 LEU HD23 H N N 353 LEU HXT H N N 354 LYS N N N N 355 LYS CA C N S 356 LYS C C N N 357 LYS O O N N 358 LYS CB C N N 359 LYS CG C N N 360 LYS CD C N N 361 LYS CE C N N 362 LYS NZ N N N 363 LYS OXT O N N 364 LYS H H N N 365 LYS H2 H N N 366 LYS HA H N N 367 LYS HB2 H N N 368 LYS HB3 H N N 369 LYS HG2 H N N 370 LYS HG3 H N N 371 LYS HD2 H N N 372 LYS HD3 H N N 373 LYS HE2 H N N 374 LYS HE3 H N N 375 LYS HZ1 H N N 376 LYS HZ2 H N N 377 LYS HZ3 H N N 378 LYS HXT H N N 379 MET N N N N 380 MET CA C N S 381 MET C C N N 382 MET O O N N 383 MET CB C N N 384 MET CG C N N 385 MET SD S N N 386 MET CE C N N 387 MET OXT O N N 388 MET H H N N 389 MET H2 H N N 390 MET HA H N N 391 MET HB2 H N N 392 MET HB3 H N N 393 MET HG2 H N N 394 MET HG3 H N N 395 MET HE1 H N N 396 MET HE2 H N N 397 MET HE3 H N N 398 MET HXT H N N 399 PHE N N N N 400 PHE CA C N S 401 PHE C C N N 402 PHE O O N N 403 PHE CB C N N 404 PHE CG C Y N 405 PHE CD1 C Y N 406 PHE CD2 C Y N 407 PHE CE1 C Y N 408 PHE CE2 C Y N 409 PHE CZ C Y N 410 PHE OXT O N N 411 PHE H H N N 412 PHE H2 H N N 413 PHE HA H N N 414 PHE HB2 H N N 415 PHE HB3 H N N 416 PHE HD1 H N N 417 PHE HD2 H N N 418 PHE HE1 H N N 419 PHE HE2 H N N 420 PHE HZ H N N 421 PHE HXT H N N 422 PRO N N N N 423 PRO CA C N S 424 PRO C C N N 425 PRO O O N N 426 PRO CB C N N 427 PRO CG C N N 428 PRO CD C N N 429 PRO OXT O N N 430 PRO H H N N 431 PRO HA H N N 432 PRO HB2 H N N 433 PRO HB3 H N N 434 PRO HG2 H N N 435 PRO HG3 H N N 436 PRO HD2 H N N 437 PRO HD3 H N N 438 PRO HXT H N N 439 SER N N N N 440 SER CA C N S 441 SER C C N N 442 SER O O N N 443 SER CB C N N 444 SER OG O N N 445 SER OXT O N N 446 SER H H N N 447 SER H2 H N N 448 SER HA H N N 449 SER HB2 H N N 450 SER HB3 H N N 451 SER HG H N N 452 SER HXT H N N 453 THR N N N N 454 THR CA C N S 455 THR C C N N 456 THR O O N N 457 THR CB C N R 458 THR OG1 O N N 459 THR CG2 C N N 460 THR OXT O N N 461 THR H H N N 462 THR H2 H N N 463 THR HA H N N 464 THR HB H N N 465 THR HG1 H N N 466 THR HG21 H N N 467 THR HG22 H N N 468 THR HG23 H N N 469 THR HXT H N N 470 TRP N N N N 471 TRP CA C N S 472 TRP C C N N 473 TRP O O N N 474 TRP CB C N N 475 TRP CG C Y N 476 TRP CD1 C Y N 477 TRP CD2 C Y N 478 TRP NE1 N Y N 479 TRP CE2 C Y N 480 TRP CE3 C Y N 481 TRP CZ2 C Y N 482 TRP CZ3 C Y N 483 TRP CH2 C Y N 484 TRP OXT O N N 485 TRP H H N N 486 TRP H2 H N N 487 TRP HA H N N 488 TRP HB2 H N N 489 TRP HB3 H N N 490 TRP HD1 H N N 491 TRP HE1 H N N 492 TRP HE3 H N N 493 TRP HZ2 H N N 494 TRP HZ3 H N N 495 TRP HH2 H N N 496 TRP HXT H N N 497 TYR N N N N 498 TYR CA C N S 499 TYR C C N N 500 TYR O O N N 501 TYR CB C N N 502 TYR CG C Y N 503 TYR CD1 C Y N 504 TYR CD2 C Y N 505 TYR CE1 C Y N 506 TYR CE2 C Y N 507 TYR CZ C Y N 508 TYR OH O N N 509 TYR OXT O N N 510 TYR H H N N 511 TYR H2 H N N 512 TYR HA H N N 513 TYR HB2 H N N 514 TYR HB3 H N N 515 TYR HD1 H N N 516 TYR HD2 H N N 517 TYR HE1 H N N 518 TYR HE2 H N N 519 TYR HH H N N 520 TYR HXT H N N 521 VAL N N N N 522 VAL CA C N S 523 VAL C C N N 524 VAL O O N N 525 VAL CB C N N 526 VAL CG1 C N N 527 VAL CG2 C N N 528 VAL OXT O N N 529 VAL H H N N 530 VAL H2 H N N 531 VAL HA H N N 532 VAL HB H N N 533 VAL HG11 H N N 534 VAL HG12 H N N 535 VAL HG13 H N N 536 VAL HG21 H N N 537 VAL HG22 H N N 538 VAL HG23 H N N 539 VAL HXT H N N 540 ZN ZN ZN N N 541 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 DA OP3 P sing N N 89 DA OP3 HOP3 sing N N 90 DA P OP1 doub N N 91 DA P OP2 sing N N 92 DA P "O5'" sing N N 93 DA OP2 HOP2 sing N N 94 DA "O5'" "C5'" sing N N 95 DA "C5'" "C4'" sing N N 96 DA "C5'" "H5'" sing N N 97 DA "C5'" "H5''" sing N N 98 DA "C4'" "O4'" sing N N 99 DA "C4'" "C3'" sing N N 100 DA "C4'" "H4'" sing N N 101 DA "O4'" "C1'" sing N N 102 DA "C3'" "O3'" sing N N 103 DA "C3'" "C2'" sing N N 104 DA "C3'" "H3'" sing N N 105 DA "O3'" "HO3'" sing N N 106 DA "C2'" "C1'" sing N N 107 DA "C2'" "H2'" sing N N 108 DA "C2'" "H2''" sing N N 109 DA "C1'" N9 sing N N 110 DA "C1'" "H1'" sing N N 111 DA N9 C8 sing Y N 112 DA N9 C4 sing Y N 113 DA C8 N7 doub Y N 114 DA C8 H8 sing N N 115 DA N7 C5 sing Y N 116 DA C5 C6 sing Y N 117 DA C5 C4 doub Y N 118 DA C6 N6 sing N N 119 DA C6 N1 doub Y N 120 DA N6 H61 sing N N 121 DA N6 H62 sing N N 122 DA N1 C2 sing Y N 123 DA C2 N3 doub Y N 124 DA C2 H2 sing N N 125 DA N3 C4 sing Y N 126 DC OP3 P sing N N 127 DC OP3 HOP3 sing N N 128 DC P OP1 doub N N 129 DC P OP2 sing N N 130 DC P "O5'" sing N N 131 DC OP2 HOP2 sing N N 132 DC "O5'" "C5'" sing N N 133 DC "C5'" "C4'" sing N N 134 DC "C5'" "H5'" sing N N 135 DC "C5'" "H5''" sing N N 136 DC "C4'" "O4'" sing N N 137 DC "C4'" "C3'" sing N N 138 DC "C4'" "H4'" sing N N 139 DC "O4'" "C1'" sing N N 140 DC "C3'" "O3'" sing N N 141 DC "C3'" "C2'" sing N N 142 DC "C3'" "H3'" sing N N 143 DC "O3'" "HO3'" sing N N 144 DC "C2'" "C1'" sing N N 145 DC "C2'" "H2'" sing N N 146 DC "C2'" "H2''" sing N N 147 DC "C1'" N1 sing N N 148 DC "C1'" "H1'" sing N N 149 DC N1 C2 sing N N 150 DC N1 C6 sing N N 151 DC C2 O2 doub N N 152 DC C2 N3 sing N N 153 DC N3 C4 doub N N 154 DC C4 N4 sing N N 155 DC C4 C5 sing N N 156 DC N4 H41 sing N N 157 DC N4 H42 sing N N 158 DC C5 C6 doub N N 159 DC C5 H5 sing N N 160 DC C6 H6 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 GLN N CA sing N N 238 GLN N H sing N N 239 GLN N H2 sing N N 240 GLN CA C sing N N 241 GLN CA CB sing N N 242 GLN CA HA sing N N 243 GLN C O doub N N 244 GLN C OXT sing N N 245 GLN CB CG sing N N 246 GLN CB HB2 sing N N 247 GLN CB HB3 sing N N 248 GLN CG CD sing N N 249 GLN CG HG2 sing N N 250 GLN CG HG3 sing N N 251 GLN CD OE1 doub N N 252 GLN CD NE2 sing N N 253 GLN NE2 HE21 sing N N 254 GLN NE2 HE22 sing N N 255 GLN OXT HXT sing N N 256 GLU N CA sing N N 257 GLU N H sing N N 258 GLU N H2 sing N N 259 GLU CA C sing N N 260 GLU CA CB sing N N 261 GLU CA HA sing N N 262 GLU C O doub N N 263 GLU C OXT sing N N 264 GLU CB CG sing N N 265 GLU CB HB2 sing N N 266 GLU CB HB3 sing N N 267 GLU CG CD sing N N 268 GLU CG HG2 sing N N 269 GLU CG HG3 sing N N 270 GLU CD OE1 doub N N 271 GLU CD OE2 sing N N 272 GLU OE2 HE2 sing N N 273 GLU OXT HXT sing N N 274 GLY N CA sing N N 275 GLY N H sing N N 276 GLY N H2 sing N N 277 GLY CA C sing N N 278 GLY CA HA2 sing N N 279 GLY CA HA3 sing N N 280 GLY C O doub N N 281 GLY C OXT sing N N 282 GLY OXT HXT sing N N 283 HIS N CA sing N N 284 HIS N H sing N N 285 HIS N H2 sing N N 286 HIS CA C sing N N 287 HIS CA CB sing N N 288 HIS CA HA sing N N 289 HIS C O doub N N 290 HIS C OXT sing N N 291 HIS CB CG sing N N 292 HIS CB HB2 sing N N 293 HIS CB HB3 sing N N 294 HIS CG ND1 sing Y N 295 HIS CG CD2 doub Y N 296 HIS ND1 CE1 doub Y N 297 HIS ND1 HD1 sing N N 298 HIS CD2 NE2 sing Y N 299 HIS CD2 HD2 sing N N 300 HIS CE1 NE2 sing Y N 301 HIS CE1 HE1 sing N N 302 HIS NE2 HE2 sing N N 303 HIS OXT HXT sing N N 304 HOH O H1 sing N N 305 HOH O H2 sing N N 306 ILE N CA sing N N 307 ILE N H sing N N 308 ILE N H2 sing N N 309 ILE CA C sing N N 310 ILE CA CB sing N N 311 ILE CA HA sing N N 312 ILE C O doub N N 313 ILE C OXT sing N N 314 ILE CB CG1 sing N N 315 ILE CB CG2 sing N N 316 ILE CB HB sing N N 317 ILE CG1 CD1 sing N N 318 ILE CG1 HG12 sing N N 319 ILE CG1 HG13 sing N N 320 ILE CG2 HG21 sing N N 321 ILE CG2 HG22 sing N N 322 ILE CG2 HG23 sing N N 323 ILE CD1 HD11 sing N N 324 ILE CD1 HD12 sing N N 325 ILE CD1 HD13 sing N N 326 ILE OXT HXT sing N N 327 LEU N CA sing N N 328 LEU N H sing N N 329 LEU N H2 sing N N 330 LEU CA C sing N N 331 LEU CA CB sing N N 332 LEU CA HA sing N N 333 LEU C O doub N N 334 LEU C OXT sing N N 335 LEU CB CG sing N N 336 LEU CB HB2 sing N N 337 LEU CB HB3 sing N N 338 LEU CG CD1 sing N N 339 LEU CG CD2 sing N N 340 LEU CG HG sing N N 341 LEU CD1 HD11 sing N N 342 LEU CD1 HD12 sing N N 343 LEU CD1 HD13 sing N N 344 LEU CD2 HD21 sing N N 345 LEU CD2 HD22 sing N N 346 LEU CD2 HD23 sing N N 347 LEU OXT HXT sing N N 348 LYS N CA sing N N 349 LYS N H sing N N 350 LYS N H2 sing N N 351 LYS CA C sing N N 352 LYS CA CB sing N N 353 LYS CA HA sing N N 354 LYS C O doub N N 355 LYS C OXT sing N N 356 LYS CB CG sing N N 357 LYS CB HB2 sing N N 358 LYS CB HB3 sing N N 359 LYS CG CD sing N N 360 LYS CG HG2 sing N N 361 LYS CG HG3 sing N N 362 LYS CD CE sing N N 363 LYS CD HD2 sing N N 364 LYS CD HD3 sing N N 365 LYS CE NZ sing N N 366 LYS CE HE2 sing N N 367 LYS CE HE3 sing N N 368 LYS NZ HZ1 sing N N 369 LYS NZ HZ2 sing N N 370 LYS NZ HZ3 sing N N 371 LYS OXT HXT sing N N 372 MET N CA sing N N 373 MET N H sing N N 374 MET N H2 sing N N 375 MET CA C sing N N 376 MET CA CB sing N N 377 MET CA HA sing N N 378 MET C O doub N N 379 MET C OXT sing N N 380 MET CB CG sing N N 381 MET CB HB2 sing N N 382 MET CB HB3 sing N N 383 MET CG SD sing N N 384 MET CG HG2 sing N N 385 MET CG HG3 sing N N 386 MET SD CE sing N N 387 MET CE HE1 sing N N 388 MET CE HE2 sing N N 389 MET CE HE3 sing N N 390 MET OXT HXT sing N N 391 PHE N CA sing N N 392 PHE N H sing N N 393 PHE N H2 sing N N 394 PHE CA C sing N N 395 PHE CA CB sing N N 396 PHE CA HA sing N N 397 PHE C O doub N N 398 PHE C OXT sing N N 399 PHE CB CG sing N N 400 PHE CB HB2 sing N N 401 PHE CB HB3 sing N N 402 PHE CG CD1 doub Y N 403 PHE CG CD2 sing Y N 404 PHE CD1 CE1 sing Y N 405 PHE CD1 HD1 sing N N 406 PHE CD2 CE2 doub Y N 407 PHE CD2 HD2 sing N N 408 PHE CE1 CZ doub Y N 409 PHE CE1 HE1 sing N N 410 PHE CE2 CZ sing Y N 411 PHE CE2 HE2 sing N N 412 PHE CZ HZ sing N N 413 PHE OXT HXT sing N N 414 PRO N CA sing N N 415 PRO N CD sing N N 416 PRO N H sing N N 417 PRO CA C sing N N 418 PRO CA CB sing N N 419 PRO CA HA sing N N 420 PRO C O doub N N 421 PRO C OXT sing N N 422 PRO CB CG sing N N 423 PRO CB HB2 sing N N 424 PRO CB HB3 sing N N 425 PRO CG CD sing N N 426 PRO CG HG2 sing N N 427 PRO CG HG3 sing N N 428 PRO CD HD2 sing N N 429 PRO CD HD3 sing N N 430 PRO OXT HXT sing N N 431 SER N CA sing N N 432 SER N H sing N N 433 SER N H2 sing N N 434 SER CA C sing N N 435 SER CA CB sing N N 436 SER CA HA sing N N 437 SER C O doub N N 438 SER C OXT sing N N 439 SER CB OG sing N N 440 SER CB HB2 sing N N 441 SER CB HB3 sing N N 442 SER OG HG sing N N 443 SER OXT HXT sing N N 444 THR N CA sing N N 445 THR N H sing N N 446 THR N H2 sing N N 447 THR CA C sing N N 448 THR CA CB sing N N 449 THR CA HA sing N N 450 THR C O doub N N 451 THR C OXT sing N N 452 THR CB OG1 sing N N 453 THR CB CG2 sing N N 454 THR CB HB sing N N 455 THR OG1 HG1 sing N N 456 THR CG2 HG21 sing N N 457 THR CG2 HG22 sing N N 458 THR CG2 HG23 sing N N 459 THR OXT HXT sing N N 460 TRP N CA sing N N 461 TRP N H sing N N 462 TRP N H2 sing N N 463 TRP CA C sing N N 464 TRP CA CB sing N N 465 TRP CA HA sing N N 466 TRP C O doub N N 467 TRP C OXT sing N N 468 TRP CB CG sing N N 469 TRP CB HB2 sing N N 470 TRP CB HB3 sing N N 471 TRP CG CD1 doub Y N 472 TRP CG CD2 sing Y N 473 TRP CD1 NE1 sing Y N 474 TRP CD1 HD1 sing N N 475 TRP CD2 CE2 doub Y N 476 TRP CD2 CE3 sing Y N 477 TRP NE1 CE2 sing Y N 478 TRP NE1 HE1 sing N N 479 TRP CE2 CZ2 sing Y N 480 TRP CE3 CZ3 doub Y N 481 TRP CE3 HE3 sing N N 482 TRP CZ2 CH2 doub Y N 483 TRP CZ2 HZ2 sing N N 484 TRP CZ3 CH2 sing Y N 485 TRP CZ3 HZ3 sing N N 486 TRP CH2 HH2 sing N N 487 TRP OXT HXT sing N N 488 TYR N CA sing N N 489 TYR N H sing N N 490 TYR N H2 sing N N 491 TYR CA C sing N N 492 TYR CA CB sing N N 493 TYR CA HA sing N N 494 TYR C O doub N N 495 TYR C OXT sing N N 496 TYR CB CG sing N N 497 TYR CB HB2 sing N N 498 TYR CB HB3 sing N N 499 TYR CG CD1 doub Y N 500 TYR CG CD2 sing Y N 501 TYR CD1 CE1 sing Y N 502 TYR CD1 HD1 sing N N 503 TYR CD2 CE2 doub Y N 504 TYR CD2 HD2 sing N N 505 TYR CE1 CZ doub Y N 506 TYR CE1 HE1 sing N N 507 TYR CE2 CZ sing Y N 508 TYR CE2 HE2 sing N N 509 TYR CZ OH sing N N 510 TYR OH HH sing N N 511 TYR OXT HXT sing N N 512 VAL N CA sing N N 513 VAL N H sing N N 514 VAL N H2 sing N N 515 VAL CA C sing N N 516 VAL CA CB sing N N 517 VAL CA HA sing N N 518 VAL C O doub N N 519 VAL C OXT sing N N 520 VAL CB CG1 sing N N 521 VAL CB CG2 sing N N 522 VAL CB HB sing N N 523 VAL CG1 HG11 sing N N 524 VAL CG1 HG12 sing N N 525 VAL CG1 HG13 sing N N 526 VAL CG2 HG21 sing N N 527 VAL CG2 HG22 sing N N 528 VAL CG2 HG23 sing N N 529 VAL OXT HXT sing N N 530 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VD6 'double helix' 3VD6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 B DC 20 1_555 -0.071 -0.022 -0.389 -15.856 -10.385 -7.112 1 A_DG3:DC40_B A 3 ? B 40 ? 19 1 1 A DT 4 1_555 B DA 19 1_555 -0.078 0.025 0.242 0.338 -22.290 5.906 2 A_DT4:DA39_B A 4 ? B 39 ? 20 1 1 A DC 5 1_555 B DG 18 1_555 0.175 -0.100 0.297 -9.934 -7.035 -0.336 3 A_DC5:DG38_B A 5 ? B 38 ? 19 1 1 A DT 6 1_555 B DA 17 1_555 -0.176 -0.105 0.426 -8.976 -13.289 3.856 4 A_DT6:DA37_B A 6 ? B 37 ? 20 1 1 A DT 7 1_555 B DA 16 1_555 0.010 -0.206 -0.246 0.935 4.501 6.549 5 A_DT7:DA36_B A 7 ? B 36 ? 20 1 1 A DA 8 1_555 B DT 15 1_555 -0.001 -0.174 0.081 4.622 -11.131 1.684 6 A_DA8:DT35_B A 8 ? B 35 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 -0.017 -0.008 0.064 15.391 -9.683 6.508 7 A_DT9:DA34_B A 9 ? B 34 ? 20 1 1 A DC 10 1_555 B DG 13 1_555 0.343 -0.156 0.040 2.062 -22.569 1.380 8 A_DC10:DG33_B A 10 ? B 33 ? 19 1 1 A DA 11 1_555 B DT 12 1_555 -0.058 -0.169 0.175 -5.504 -3.148 2.008 9 A_DA11:DT32_B A 11 ? B 32 ? 20 1 1 A DG 12 1_555 B DC 11 1_555 -0.370 -0.228 0.195 -1.903 -21.281 1.909 10 A_DG12:DC31_B A 12 ? B 31 ? 19 1 1 A DA 13 1_555 B DT 10 1_555 0.121 -0.017 0.085 -19.356 -8.409 1.542 11 A_DA13:DT30_B A 13 ? B 30 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.013 -0.011 0.527 -12.290 -11.149 -2.319 12 A_DT14:DA29_B A 14 ? B 29 ? 20 1 1 A DG 15 1_555 B DC 8 1_555 -0.091 -0.070 -0.017 -1.224 3.376 -0.664 13 A_DG15:DC28_B A 15 ? B 28 ? 19 1 1 A DG 16 1_555 B DC 7 1_555 -0.452 -0.182 0.116 7.393 -9.440 -0.523 14 A_DG16:DC27_B A 16 ? B 27 ? 19 1 1 A DA 17 1_555 B DT 6 1_555 0.188 -0.159 0.259 10.805 -14.607 1.000 15 A_DA17:DT26_B A 17 ? B 26 ? 20 1 1 A DC 18 1_555 B DG 5 1_555 0.312 -0.042 0.063 3.352 -16.766 4.603 16 A_DC18:DG25_B A 18 ? B 25 ? 19 1 1 A DT 19 1_555 B DA 4 1_555 -0.253 0.103 0.242 -6.010 -15.635 1.031 17 A_DT19:DA24_B A 19 ? B 24 ? 20 1 1 A DC 20 1_555 B DG 3 1_555 0.164 -0.067 0.427 0.675 -12.986 4.018 18 A_DC20:DG23_B A 20 ? B 23 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 B DC 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.241 0.020 2.897 -4.418 2.727 30.885 -0.422 -0.297 2.894 5.076 8.224 31.308 1 AA_DG3DT4:DA39DC40_BB A 3 ? B 40 ? A 4 ? B 39 ? 1 A DT 4 1_555 B DA 19 1_555 A DC 5 1_555 B DG 18 1_555 0.446 0.870 3.642 -0.373 -1.967 42.578 1.416 -0.655 3.596 -2.707 0.514 42.623 2 AA_DT4DC5:DG38DA39_BB A 4 ? B 39 ? A 5 ? B 38 ? 1 A DC 5 1_555 B DG 18 1_555 A DT 6 1_555 B DA 17 1_555 -0.662 0.514 3.401 -2.331 -2.290 30.375 1.448 0.775 3.394 -4.355 4.432 30.546 3 AA_DC5DT6:DA37DG38_BB A 5 ? B 38 ? A 6 ? B 37 ? 1 A DT 6 1_555 B DA 17 1_555 A DT 7 1_555 B DA 16 1_555 1.607 0.912 3.219 4.823 -2.393 38.688 1.655 -1.819 3.328 -3.591 -7.238 39.046 4 AA_DT6DT7:DA36DA37_BB A 6 ? B 37 ? A 7 ? B 36 ? 1 A DT 7 1_555 B DA 16 1_555 A DA 8 1_555 B DT 15 1_555 -1.627 0.652 3.331 -4.037 -3.352 38.537 1.401 1.936 3.411 -5.049 6.082 38.879 5 AA_DT7DA8:DT35DA36_BB A 7 ? B 36 ? A 8 ? B 35 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 0.640 -0.404 2.993 -0.109 -2.788 28.972 -0.243 -1.295 3.016 -5.555 0.218 29.103 6 AA_DA8DT9:DA34DT35_BB A 8 ? B 35 ? A 9 ? B 34 ? 1 A DT 9 1_555 B DA 14 1_555 A DC 10 1_555 B DG 13 1_555 0.281 -0.112 3.462 0.500 -5.357 42.292 0.418 -0.333 3.453 -7.389 -0.690 42.617 7 AA_DT9DC10:DG33DA34_BB A 9 ? B 34 ? A 10 ? B 33 ? 1 A DC 10 1_555 B DG 13 1_555 A DA 11 1_555 B DT 12 1_555 0.015 -0.962 3.341 1.206 6.892 34.405 -2.621 0.154 3.096 11.504 -2.013 35.088 8 AA_DC10DA11:DT32DG33_BB A 10 ? B 33 ? A 11 ? B 32 ? 1 A DA 11 1_555 B DT 12 1_555 A DG 12 1_555 B DC 11 1_555 -0.010 -0.753 3.238 -0.789 1.918 35.912 -1.488 -0.095 3.195 3.107 1.278 35.970 9 AA_DA11DG12:DC31DT32_BB A 11 ? B 32 ? A 12 ? B 31 ? 1 A DG 12 1_555 B DC 11 1_555 A DA 13 1_555 B DT 10 1_555 -0.359 -0.218 3.560 -0.617 -1.540 43.568 -0.133 0.418 3.570 -2.074 0.831 43.598 10 AA_DG12DA13:DT30DC31_BB A 12 ? B 31 ? A 13 ? B 30 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.770 -0.701 3.130 -3.842 -2.085 28.383 -0.953 0.706 3.245 -4.221 7.778 28.711 11 AA_DA13DT14:DA29DT30_BB A 13 ? B 30 ? A 14 ? B 29 ? 1 A DT 14 1_555 B DA 9 1_555 A DG 15 1_555 B DC 8 1_555 1.076 0.717 3.095 4.813 -1.915 36.061 1.404 -1.078 3.167 -3.073 -7.725 36.419 12 AA_DT14DG15:DC28DA29_BB A 14 ? B 29 ? A 15 ? B 28 ? 1 A DG 15 1_555 B DC 8 1_555 A DG 16 1_555 B DC 7 1_555 -1.326 0.750 3.204 -4.858 4.100 32.596 0.610 1.488 3.427 7.220 8.554 33.194 13 AA_DG15DG16:DC27DC28_BB A 15 ? B 28 ? A 16 ? B 27 ? 1 A DG 16 1_555 B DC 7 1_555 A DA 17 1_555 B DT 6 1_555 -0.225 -0.110 3.207 -0.818 2.055 36.119 -0.461 0.250 3.200 3.310 1.318 36.184 14 AA_DG16DA17:DT26DC27_BB A 16 ? B 27 ? A 17 ? B 26 ? 1 A DA 17 1_555 B DT 6 1_555 A DC 18 1_555 B DG 5 1_555 0.816 -0.758 3.420 1.812 0.866 34.491 -1.416 -1.081 3.437 1.459 -3.052 34.548 15 AA_DA17DC18:DG25DT26_BB A 17 ? B 26 ? A 18 ? B 25 ? 1 A DC 18 1_555 B DG 5 1_555 A DT 19 1_555 B DA 4 1_555 -0.074 -0.587 3.448 2.435 4.681 32.687 -1.853 0.558 3.320 8.250 -4.292 33.099 16 AA_DC18DT19:DA24DG25_BB A 18 ? B 25 ? A 19 ? B 24 ? 1 A DT 19 1_555 B DA 4 1_555 A DC 20 1_555 B DG 3 1_555 0.461 -0.206 3.117 -1.196 -1.521 37.864 -0.131 -0.855 3.107 -2.342 1.841 37.911 17 AA_DT19DC20:DG23DA24_BB A 19 ? B 24 ? A 20 ? B 23 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ACETATE ION' ACT 5 'ZINC ION' ZN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DFX _pdbx_initial_refinement_model.details 'PDB ENTRY 3DFX' #