HEADER TRANSCRIPTION/DNA 04-JAN-12 3VD6 TITLE BOTH ZN FINGERS OF GATA1 BOUND TO PALINDROMIC DNA RECOGNITION SITE, TITLE 2 P21 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ERYTHROID TRANSCRIPTION FACTOR; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: N AND C FINGERS, RESIDUES 200-318; COMPND 15 SYNONYM: ERYF1, GATA-BINDING FACTOR 1, GATA-1, GF-1, NF-E1 DNA- COMPND 16 BINDING PROTEIN; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: GATA1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS PROTEIN-DNA COMPLEX, ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, KEYWDS 2 NUCLEUS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.A.JACQUES,N.RIPIN,L.E.WILKINSON-WHITE,J.M.GUSS,J.M.MATTHEWS REVDAT 3 08-NOV-23 3VD6 1 REMARK REVDAT 2 24-MAY-23 3VD6 1 SOURCE JRNL REMARK LINK REVDAT 1 16-JAN-13 3VD6 0 JRNL AUTH L.WILKINSON-WHITE,K.L.LESTER,N.RIPIN,D.A.JACQUES, JRNL AUTH 2 J.MITCHELL GUSS,J.M.MATTHEWS JRNL TITL GATA1 DIRECTLY MEDIATES INTERACTIONS WITH CLOSELY SPACED JRNL TITL 2 PSEUDOPALINDROMIC BUT NOT DISTANTLY SPACED DOUBLE GATA SITES JRNL TITL 3 ON DNA. JRNL REF PROTEIN SCI. V. 24 1649 2015 JRNL REFN ESSN 1469-896X JRNL PMID 26234528 JRNL DOI 10.1002/PRO.2760 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 18203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 887 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 756 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.91000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1690 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 907 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2455 ; 1.080 ; 2.540 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2229 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 96 ; 3.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;31.671 ;22.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 132 ;10.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1293 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 248 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 481 ; 0.917 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 195 ; 0.179 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 770 ; 1.655 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 2.029 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1684 ; 2.844 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 RESIDUE RANGE : B 21 B 40 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7333 -0.0143 16.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1049 REMARK 3 T33: 0.0463 T12: 0.0227 REMARK 3 T13: 0.0457 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.9846 L22: 2.9715 REMARK 3 L33: 3.0370 L12: -1.1379 REMARK 3 L13: 0.9964 L23: -0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.0754 S13: -0.2549 REMARK 3 S21: -0.1552 S22: -0.0862 S23: 0.1278 REMARK 3 S31: 0.1146 S32: 0.1688 S33: 0.0455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 201 C 241 REMARK 3 RESIDUE RANGE : C 500 C 500 REMARK 3 RESIDUE RANGE : C 502 C 502 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1923 4.5291 27.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1724 REMARK 3 T33: 0.0403 T12: -0.0237 REMARK 3 T13: -0.0148 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 3.2619 L22: 5.0310 REMARK 3 L33: 4.9215 L12: -1.2697 REMARK 3 L13: 0.9020 L23: -0.8592 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.2644 S13: -0.0059 REMARK 3 S21: 0.3362 S22: -0.0151 S23: -0.2997 REMARK 3 S31: -0.1926 S32: 0.3926 S33: 0.0610 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 256 C 309 REMARK 3 RESIDUE RANGE : C 501 C 501 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6540 8.5691 6.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.1210 REMARK 3 T33: 0.1186 T12: 0.0176 REMARK 3 T13: -0.0653 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 4.7485 L22: 4.0336 REMARK 3 L33: 6.9810 L12: -0.8101 REMARK 3 L13: 1.5839 L23: 1.4645 REMARK 3 S TENSOR REMARK 3 S11: -0.1629 S12: 0.6763 S13: 0.4810 REMARK 3 S21: -0.6442 S22: -0.1471 S23: 0.1271 REMARK 3 S31: -0.4617 S32: 0.3481 S33: 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3VD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MAXFLUX MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3DFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BISTRIS, REMARK 280 25% PEG 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.70050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 200 REMARK 465 ILE C 242 REMARK 465 ARG C 243 REMARK 465 PRO C 244 REMARK 465 LYS C 245 REMARK 465 LYS C 246 REMARK 465 ARG C 247 REMARK 465 MET C 248 REMARK 465 ILE C 249 REMARK 465 VAL C 250 REMARK 465 SER C 251 REMARK 465 LYS C 252 REMARK 465 ARG C 253 REMARK 465 ALA C 254 REMARK 465 GLY C 255 REMARK 465 GLY C 311 REMARK 465 LYS C 312 REMARK 465 GLY C 313 REMARK 465 LYS C 314 REMARK 465 LYS C 315 REMARK 465 LYS C 316 REMARK 465 ARG C 317 REMARK 465 GLY C 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC A 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC A 18 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 28 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT B 30 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 38 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC B 40 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 204 SG REMARK 620 2 CYS C 207 SG 109.0 REMARK 620 3 CYS C 225 SG 117.8 111.7 REMARK 620 4 CYS C 228 SG 107.6 109.6 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 218 OD2 REMARK 620 2 HIS C 222 ND1 119.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 258 SG REMARK 620 2 CYS C 261 SG 107.9 REMARK 620 3 CYS C 279 SG 114.3 115.9 REMARK 620 4 CYS C 282 SG 104.7 109.9 103.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 502 DBREF 3VD6 A 1 20 PDB 3VD6 3VD6 1 20 DBREF 3VD6 B 21 40 PDB 3VD6 3VD6 21 40 DBREF 3VD6 C 200 318 UNP P17679 GATA1_MOUSE 200 318 SEQRES 1 A 20 DT DT DG DT DC DT DT DA DT DC DA DG DA SEQRES 2 A 20 DT DG DG DA DC DT DC SEQRES 1 B 20 DA DA DG DA DG DT DC DC DA DT DC DT DG SEQRES 2 B 20 DA DT DA DA DG DA DC SEQRES 1 C 119 GLU ALA ARG GLU CYS VAL ASN CYS GLY ALA THR ALA THR SEQRES 2 C 119 PRO LEU TRP ARG ARG ASP ARG THR GLY HIS TYR LEU CYS SEQRES 3 C 119 ASN ALA CYS GLY LEU TYR HIS LYS MET ASN GLY GLN ASN SEQRES 4 C 119 ARG PRO LEU ILE ARG PRO LYS LYS ARG MET ILE VAL SER SEQRES 5 C 119 LYS ARG ALA GLY THR GLN CYS THR ASN CYS GLN THR THR SEQRES 6 C 119 THR THR THR LEU TRP ARG ARG ASN ALA SER GLY ASP PRO SEQRES 7 C 119 VAL CYS ASN ALA CYS GLY LEU TYR PHE LYS LEU HIS GLN SEQRES 8 C 119 VAL ASN ARG PRO LEU THR MET ARG LYS ASP GLY ILE GLN SEQRES 9 C 119 THR ARG ASN ARG LYS ALA SER GLY LYS GLY LYS LYS LYS SEQRES 10 C 119 ARG GLY HET ACT A 101 4 HET ZN C 500 1 HET ZN C 501 1 HET ZN C 502 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *93(H2 O) HELIX 1 1 CYS C 225 GLY C 236 1 12 HELIX 2 2 CYS C 279 GLN C 290 1 12 HELIX 3 3 PRO C 294 ARG C 298 5 5 SHEET 1 A 2 ARG C 216 ARG C 217 0 SHEET 2 A 2 TYR C 223 LEU C 224 -1 O LEU C 224 N ARG C 216 SHEET 1 B 2 ARG C 270 ARG C 271 0 SHEET 2 B 2 PRO C 277 VAL C 278 -1 O VAL C 278 N ARG C 270 LINK SG CYS C 204 ZN ZN C 500 1555 1555 2.23 LINK SG CYS C 207 ZN ZN C 500 1555 1555 2.30 LINK OD2 ASP C 218 ZN ZN C 502 1555 1555 1.79 LINK ND1 HIS C 222 ZN ZN C 502 1555 1555 2.29 LINK SG CYS C 225 ZN ZN C 500 1555 1555 2.27 LINK SG CYS C 228 ZN ZN C 500 1555 1555 2.33 LINK SG CYS C 258 ZN ZN C 501 1555 1555 2.40 LINK SG CYS C 261 ZN ZN C 501 1555 1555 2.19 LINK SG CYS C 279 ZN ZN C 501 1555 1555 2.27 LINK SG CYS C 282 ZN ZN C 501 1555 1555 2.24 SITE 1 AC1 3 DT A 9 DC A 10 ARG C 202 SITE 1 AC2 4 CYS C 204 CYS C 207 CYS C 225 CYS C 228 SITE 1 AC3 4 CYS C 258 CYS C 261 CYS C 279 CYS C 282 SITE 1 AC4 2 ASP C 218 HIS C 222 CRYST1 54.331 37.401 65.484 90.00 98.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018406 0.000000 0.002754 0.00000 SCALE2 0.000000 0.026737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015441 0.00000