HEADER PHOTOSYNTHESIS 05-JAN-12 3VDI TITLE STRUCTURE OF THE FMO PROTEIN FROM PELODICTYON PHAEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCHLOROPHYLL A PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PELODICTYON PHAEUM; SOURCE 3 ORGANISM_COMMON: GREEN SULFUR BACTERIA; SOURCE 4 ORGANISM_TAXID: 34091 KEYWDS ALPHA/BETA PROTEIN, ENERGY TRANSFER, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR D.E.TRONRUD,C.R.LARSON,C.O.SENG,L.LAUMAN,H.J.MATTHIES,J.WEN, AUTHOR 2 R.E.BLANKENSHIP,J.P.ALLEN REVDAT 4 13-SEP-23 3VDI 1 REMARK REVDAT 3 09-MAY-12 3VDI 1 JRNL REVDAT 2 11-APR-12 3VDI 1 JRNL REVDAT 1 25-JAN-12 3VDI 0 SPRSDE 25-JAN-12 3VDI 3OEG JRNL AUTH D.E.TRONRUD,J.P.ALLEN JRNL TITL REINTERPRETATION OF THE ELECTRON DENSITY AT THE SITE OF THE JRNL TITL 2 EIGHTH BACTERIOCHLOROPHYLL IN THE FMO PROTEIN FROM JRNL TITL 3 PELODICTYON PHAEUM. JRNL REF PHOTOSYNTH.RES. V. 112 71 2012 JRNL REFN ISSN 0166-8595 JRNL PMID 22457093 JRNL DOI 10.1007/S11120-012-9735-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.R.LARSON,C.O.SENG,L.LAUMAN,H.J.MATTHIES,J.WEN, REMARK 1 AUTH 2 R.E.BLANKENSHIP,J.P.ALLEN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THE FMO PROTEIN FROM REMARK 1 TITL 2 PELODICTYON PHAEUM AND THE IMPLICATIONS FOR ENERGY TRANSFER. REMARK 1 REF PHOTOSYNTH.RES. V. 107 139 2011 REMARK 1 REFN ISSN 0166-8595 REMARK 1 PMID 21181557 REMARK 1 DOI 10.1007/S11120-010-9604-2 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2704 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1797 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2556 REMARK 3 BIN R VALUE (WORKING SET) : 0.1776 REMARK 3 BIN FREE R VALUE : 0.2132 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.47 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 500 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33880 REMARK 3 B22 (A**2) : 1.33880 REMARK 3 B33 (A**2) : -2.67770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.174 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3405 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4707 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1156 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 122 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 457 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3405 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 410 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3711 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|*} REMARK 3 ORIGIN FOR THE GROUP (A): -24.1847 34.0687 24.3031 REMARK 3 T TENSOR REMARK 3 T11: -0.0188 T22: 0.0158 REMARK 3 T33: -0.0721 T12: -0.0189 REMARK 3 T13: -0.0188 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.2839 L22: 0.2971 REMARK 3 L33: 0.4019 L12: -0.0133 REMARK 3 L13: -0.0440 L23: -0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.0019 S13: 0.0590 REMARK 3 S21: 0.0070 S22: -0.0292 S23: -0.0810 REMARK 3 S31: -0.0533 S32: 0.0898 S33: 0.0741 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSING SAGITTAL REMARK 200 BEND SECOND MONO CRYSTAL WITH 4: REMARK 200 1 MAGNIFICATION RATIO AND REMARK 200 VERTICALLY FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3EOJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM HEPES, PH 7.5, 16% PEG2000 MME, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.86200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.86200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.86200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 53560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -41.98350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 72.71756 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -83.96700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1137 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 ALA A -3 REMARK 465 LEU A -2 REMARK 465 PHE A -1 REMARK 465 GLY A 0 REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 209 REMARK 465 GLU A 210 REMARK 465 LYS A 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CD CE NZ REMARK 470 LYS A 107 CE NZ REMARK 470 ARG A 121 NE CZ NH1 NH2 REMARK 470 MET A 135 CE REMARK 470 LYS A 152 CD CE NZ REMARK 470 LYS A 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 40 O HOH A 1133 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -7.41 78.17 REMARK 500 VAL A 133 -70.57 -109.60 REMARK 500 LEU A 331 -121.92 55.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 409 REMARK 610 PG4 A 410 REMARK 610 PG4 A 411 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 238 O REMARK 620 2 BCL A 405 NA 102.5 REMARK 620 3 BCL A 405 NB 92.1 89.9 REMARK 620 4 BCL A 405 NC 94.9 162.7 89.6 REMARK 620 5 BCL A 405 ND 111.5 88.5 156.1 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1005 O REMARK 620 2 BCL A 402 NA 93.2 REMARK 620 3 BCL A 402 NB 103.4 89.3 REMARK 620 4 BCL A 402 NC 108.6 157.8 89.5 REMARK 620 5 BCL A 402 ND 99.7 88.3 156.9 84.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EOJ RELATED DB: PDB REMARK 900 FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K REMARK 900 RELATED ID: 3ENI RELATED DB: PDB REMARK 900 FMO PROTEIN FROM CHLOROBIUM TEPIDUM DBREF 3VDI A -4 362 PDB 3VDI 3VDI -4 362 SEQRES 1 A 367 MET ALA LEU PHE GLY THR LYS ASP THR THR THR ALA HIS SEQRES 2 A 367 SER ASP TYR GLU ILE ILE LEU GLU GLY GLY SER SER SER SEQRES 3 A 367 TRP GLY GLN ILE LYS GLY ARG ALA LYS VAL ASN VAL PRO SEQRES 4 A 367 ALA ALA LEU PRO LEU LEU PRO ALA ASP CYS ASN ILE LYS SEQRES 5 A 367 ILE GLU ALA LYS PRO LEU ASP ALA GLN LYS GLY VAL VAL SEQRES 6 A 367 ARG PHE THR SER GLN ILE GLU SER ILE VAL ASP SER THR SEQRES 7 A 367 LYS ASN LYS LEU VAL VAL GLU VAL ASP ILE ALA ASN GLU SEQRES 8 A 367 THR LYS ASP ARG ARG ILE ALA VAL GLY GLU GLY GLU VAL SEQRES 9 A 367 SER VAL GLY ASP PHE SER HIS LYS PHE SER PHE GLU GLY SEQRES 10 A 367 SER VAL VAL ASN MET TYR TYR TYR ARG SER ASP ALA VAL SEQRES 11 A 367 ARG ARG ASN VAL PRO ASN PRO VAL TYR MET GLN GLY ARG SEQRES 12 A 367 GLN PHE HIS ASP ILE MET MET LYS VAL PRO LEU ASP ASN SEQRES 13 A 367 LYS ASP LEU ILE GLU THR TRP GLU GLY PHE GLN GLN SER SEQRES 14 A 367 ILE SER GLY GLY GLY VAL ASN PHE GLY ASP TRP ILE ARG SEQRES 15 A 367 GLU PHE TRP PHE ILE GLY PRO ALA TYR THR ALA ILE ASN SEQRES 16 A 367 GLU GLY GLY GLN ARG ILE SER PRO ILE GLN VAL ASN ASN SEQRES 17 A 367 PHE GLY VAL GLU SER GLY GLU LYS GLY PRO VAL GLY VAL SEQRES 18 A 367 SER ARG TRP LYS PHE SER HIS ALA GLY SER GLY ILE VAL SEQRES 19 A 367 ASP SER ILE SER ARG TRP ALA GLU LEU PHE PRO VAL GLU SEQRES 20 A 367 GLN LEU ASN LYS PRO ALA SER ILE GLU GLY GLY PHE ARG SEQRES 21 A 367 SER ASP SER GLN GLY ILE GLU VAL LYS VAL ASP GLY ASN SEQRES 22 A 367 LEU PRO GLY VAL SER ARG ASP ALA GLY GLY GLY LEU ARG SEQRES 23 A 367 ARG ILE LEU ASN HIS PRO LEU ILE PRO LEU VAL HIS HIS SEQRES 24 A 367 GLY MET VAL GLY LYS PHE ASN ASP PHE THR VAL ASP THR SEQRES 25 A 367 GLN LEU LYS VAL VAL LEU PRO LYS GLY TYR LYS ILE ARG SEQRES 26 A 367 TYR ALA ALA PRO GLN PHE ARG SER GLN ASN LEU GLU GLU SEQRES 27 A 367 TYR ARG TRP SER GLY GLY ALA TYR ALA ARG TRP VAL GLU SEQRES 28 A 367 HIS VAL CYS LYS GLY GLY THR GLY GLN PHE GLU VAL LEU SEQRES 29 A 367 TYR ALA GLN HET BCL A 401 66 HET BCL A 402 66 HET BCL A 403 66 HET BCL A 404 66 HET BCL A 405 66 HET BCL A 406 66 HET BCL A 407 66 HET PG4 A 408 13 HET PG4 A 409 10 HET PG4 A 410 7 HET PG4 A 411 8 HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 BCL 7(C55 H74 MG N4 O6) FORMUL 9 PG4 4(C8 H18 O5) FORMUL 13 HOH *203(H2 O) HELIX 1 1 SER A 122 VAL A 129 1 8 HELIX 2 2 ASN A 151 GLY A 169 1 19 HELIX 3 3 GLY A 169 PHE A 181 1 13 HELIX 4 4 GLY A 183 GLY A 192 1 10 HELIX 5 5 VAL A 229 ARG A 234 1 6 HELIX 6 6 PRO A 240 LEU A 244 5 5 HELIX 7 7 PRO A 287 GLY A 295 1 9 HELIX 8 8 GLY A 338 LYS A 350 1 13 SHEET 1 A 3 GLN A 194 ILE A 196 0 SHEET 2 A 3 VAL A 214 GLY A 225 -1 O ALA A 224 N ARG A 195 SHEET 3 A 3 GLN A 200 GLU A 207 -1 N GLU A 207 O VAL A 214 SHEET 1 B15 GLN A 194 ILE A 196 0 SHEET 2 B15 VAL A 214 GLY A 225 -1 O ALA A 224 N ARG A 195 SHEET 3 B15 GLY A 137 PRO A 148 -1 N GLN A 139 O HIS A 223 SHEET 4 B15 PHE A 104 TYR A 118 -1 N GLU A 111 O MET A 144 SHEET 5 B15 ARG A 90 VAL A 101 -1 N VAL A 99 O HIS A 106 SHEET 6 B15 THR A 73 ASN A 85 -1 N ALA A 84 O ILE A 92 SHEET 7 B15 VAL A 59 VAL A 70 -1 N PHE A 62 O VAL A 81 SHEET 8 B15 ALA A 42 ASP A 54 -1 N LYS A 51 O ARG A 61 SHEET 9 B15 ALA A 248 ASP A 257 -1 O GLY A 252 N ILE A 46 SHEET 10 B15 GLY A 260 LEU A 269 -1 O ASP A 266 N GLU A 251 SHEET 11 B15 GLY A 23 VAL A 31 -1 N GLY A 27 O VAL A 265 SHEET 12 B15 THR A 6 LEU A 15 -1 N HIS A 8 O LYS A 30 SHEET 13 B15 THR A 304 VAL A 312 1 O THR A 304 N ALA A 7 SHEET 14 B15 GLU A 333 TRP A 336 -1 O TYR A 334 N VAL A 311 SHEET 15 B15 SER A 328 ASN A 330 -1 N SER A 328 O ARG A 335 SHEET 1 C 4 SER A 273 GLY A 277 0 SHEET 2 C 4 LEU A 280 ILE A 283 -1 O ARG A 282 N ARG A 274 SHEET 3 C 4 GLU A 357 ALA A 361 -1 O TYR A 360 N ARG A 281 SHEET 4 C 4 LYS A 318 ALA A 323 -1 N TYR A 321 O LEU A 359 LINK O LEU A 238 MG BCL A 405 1555 1555 1.97 LINK MG BCL A 402 O HOH A1005 1555 1555 2.05 CISPEP 1 LEU A 40 PRO A 41 0 -5.03 CISPEP 2 ALA A 323 PRO A 324 0 1.82 SITE 1 AC1 19 VAL A 101 PHE A 104 HIS A 106 PHE A 108 SITE 2 AC1 19 SER A 122 MET A 145 VAL A 147 ASP A 153 SITE 3 AC1 19 LEU A 154 THR A 157 TRP A 158 PHE A 161 SITE 4 AC1 19 PHE A 179 SER A 217 TRP A 219 BCL A 402 SITE 5 AC1 19 BCL A 406 BCL A 407 HOH A1009 SITE 1 AC2 19 SER A 68 VAL A 70 ASN A 75 PHE A 108 SITE 2 AC2 19 PHE A 110 TYR A 120 VAL A 125 VAL A 129 SITE 3 AC2 19 PRO A 132 VAL A 133 TYR A 134 GLN A 136 SITE 4 AC2 19 TRP A 180 ILE A 182 BCL A 401 BCL A 406 SITE 5 AC2 19 BCL A 407 HOH A1005 HOH A1006 SITE 1 AC3 20 ALA A 7 TYR A 11 ALA A 29 PRO A 34 SITE 2 AC3 20 ALA A 35 ALA A 36 PHE A 181 PHE A 254 SITE 3 AC3 20 SER A 256 ILE A 261 VAL A 263 HIS A 294 SITE 4 AC3 20 VAL A 297 GLY A 298 ASN A 301 PHE A 303 SITE 5 AC3 20 BCL A 404 BCL A 405 BCL A 406 BCL A 407 SITE 1 AC4 17 TYR A 11 ILE A 13 ILE A 46 GLY A 253 SITE 2 AC4 17 LEU A 284 HIS A 286 PRO A 287 PRO A 290 SITE 3 AC4 17 HIS A 294 LEU A 309 TYR A 341 TRP A 344 SITE 4 AC4 17 PHE A 356 BCL A 403 BCL A 405 BCL A 407 SITE 5 AC4 17 HOH A1023 SITE 1 AC5 18 ILE A 25 ALA A 50 VAL A 60 PHE A 62 SITE 2 AC5 18 ILE A 66 ARG A 234 GLU A 237 LEU A 238 SITE 3 AC5 18 PHE A 239 PRO A 240 ILE A 250 PRO A 270 SITE 4 AC5 18 PRO A 287 BCL A 403 BCL A 404 BCL A 406 SITE 5 AC5 18 BCL A 407 HOH A1004 SITE 1 AC6 23 ILE A 48 ALA A 50 PHE A 62 VAL A 79 SITE 2 AC6 23 VAL A 81 ILE A 83 ARG A 91 ILE A 92 SITE 3 AC6 23 ALA A 93 GLY A 112 VAL A 114 GLN A 139 SITE 4 AC6 23 HIS A 141 TRP A 180 HIS A 223 SER A 231 SITE 5 AC6 23 ALA A 248 SER A 249 BCL A 401 BCL A 402 SITE 6 AC6 23 BCL A 403 BCL A 405 BCL A 407 SITE 1 AC7 23 ALA A 36 LEU A 37 ILE A 66 LEU A 77 SITE 2 AC7 23 TYR A 134 PHE A 181 PRO A 184 ALA A 185 SITE 3 AC7 23 ALA A 188 GLN A 194 ILE A 289 HIS A 293 SITE 4 AC7 23 HIS A 294 MET A 296 VAL A 297 BCL A 401 SITE 5 AC7 23 BCL A 402 BCL A 403 BCL A 404 BCL A 405 SITE 6 AC7 23 BCL A 406 HOH A1014 HOH A1111 SITE 1 AC8 8 TYR A 119 TYR A 120 GLY A 160 PHE A 161 SITE 2 AC8 8 SER A 164 GLY A 168 ILE A 176 HOH A1001 SITE 1 AC9 3 ARG A 255 ASP A 257 GLY A 260 SITE 1 BC1 5 PHE A 303 ARG A 343 GLU A 346 HOH A1123 SITE 2 BC1 5 HOH A1202 SITE 1 BC2 3 ASP A 71 ALA A 276 ARG A 282 CRYST1 83.967 83.967 115.724 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011909 0.006876 0.000000 0.00000 SCALE2 0.000000 0.013752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008641 0.00000