HEADER DNA BINDING PROTEIN/PROTEIN BINDING 05-JAN-12 3VDO OBSLTE 22-JAN-14 3VDO 4NQW TITLE STRUCTURE OF EXTRA-CYTOPLASMIC FUNCTION(ECF) SIGMA FACTOR SIGK IN TITLE 2 COMPLEX WITH ITS NEGATIVE REGULATOR RSKA FROM MYCOBACTERIUM TITLE 3 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR SIGK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIGMA-K FACTOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-SIGMA-K FACTOR RSKA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 1-80; COMPND 10 SYNONYM: REGULATOR OF SIGK; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: SIGK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 13 ORGANISM_TAXID: 1773; SOURCE 14 STRAIN: H37RV; SOURCE 15 GENE: RSKA, RV0444C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS ECF SIGMA FACTOR, PROMOTER DNA BINDING, RECOGNITION AND TRANSCRIPTION KEYWDS 2 INITIATION, DNA, DNA BINDING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.K.SHUKLA,B.GOPAL REVDAT 2 22-JAN-14 3VDO 1 OBSLTE REVDAT 1 10-APR-13 3VDO 0 JRNL AUTH J.K.SHUKLA,B.GOPAL JRNL TITL STRUCTURE OF EXTRA-CYTOPLASMIC FUNCTION(ECF) SIGMA FACTOR JRNL TITL 2 SIGK IN COMPLEX WITH ITS NEGATIVE REGULATOR RSKA FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 9365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6970 - 3.4602 0.90 3138 144 0.1953 0.2231 REMARK 3 2 3.4602 - 2.7471 0.97 3065 152 0.2109 0.2612 REMARK 3 3 2.7471 - 2.4001 0.84 2723 143 0.2481 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 32.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39810 REMARK 3 B22 (A**2) : 2.39810 REMARK 3 B33 (A**2) : -4.79620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1775 REMARK 3 ANGLE : 1.193 2401 REMARK 3 CHIRALITY : 0.067 278 REMARK 3 PLANARITY : 0.004 313 REMARK 3 DIHEDRAL : 16.131 658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 10:18) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5726 20.5083 42.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.6019 REMARK 3 T33: 0.6015 T12: 0.2235 REMARK 3 T13: 0.2372 T23: 0.4638 REMARK 3 L TENSOR REMARK 3 L11: 5.6223 L22: 0.4218 REMARK 3 L33: 2.6323 L12: -1.3884 REMARK 3 L13: -0.5081 L23: -0.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.3666 S12: 0.7202 S13: -0.0444 REMARK 3 S21: 0.2008 S22: 0.6379 S23: 0.7002 REMARK 3 S31: -0.4129 S32: -1.4006 S33: -0.5994 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 21:32) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5285 21.2759 36.2629 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.4822 REMARK 3 T33: 0.2516 T12: 0.2311 REMARK 3 T13: 0.1919 T23: 0.2549 REMARK 3 L TENSOR REMARK 3 L11: 3.0890 L22: 0.3390 REMARK 3 L33: 2.1328 L12: 0.0324 REMARK 3 L13: -1.1836 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.1129 S12: 0.5240 S13: 1.3721 REMARK 3 S21: 0.5787 S22: 0.0842 S23: -0.0678 REMARK 3 S31: 0.3598 S32: -0.7125 S33: -0.6664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 33:94) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8470 8.2913 39.3172 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0643 REMARK 3 T33: -0.0413 T12: -0.0184 REMARK 3 T13: 0.0126 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.4201 L22: 0.9574 REMARK 3 L33: 1.7698 L12: -0.0686 REMARK 3 L13: -1.3291 L23: -1.4681 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: 0.2773 S13: -0.0272 REMARK 3 S21: -0.2652 S22: 0.1268 S23: -0.0368 REMARK 3 S31: -0.0382 S32: -0.3284 S33: -0.0962 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 123:159) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1100 2.6743 55.7704 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.2078 REMARK 3 T33: 0.1223 T12: -0.0806 REMARK 3 T13: -0.0111 T23: 0.0924 REMARK 3 L TENSOR REMARK 3 L11: 1.6282 L22: 1.0904 REMARK 3 L33: 1.6938 L12: 0.5322 REMARK 3 L13: 0.8186 L23: -0.5892 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: -0.1290 S13: -0.1774 REMARK 3 S21: -0.0633 S22: -0.2193 S23: -0.4463 REMARK 3 S31: -0.2985 S32: 0.5067 S33: 0.1336 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 160:184) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1154 -4.9500 59.0767 REMARK 3 T TENSOR REMARK 3 T11: -0.5802 T22: 0.1101 REMARK 3 T33: 0.0918 T12: -0.2843 REMARK 3 T13: 0.0383 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 1.1431 L22: 1.7894 REMARK 3 L33: 0.2904 L12: 0.0487 REMARK 3 L13: -0.3024 L23: 0.3319 REMARK 3 S TENSOR REMARK 3 S11: 1.0501 S12: 0.5731 S13: -0.1971 REMARK 3 S21: -0.3510 S22: -0.9782 S23: -0.2661 REMARK 3 S31: -0.4450 S32: -0.3593 S33: 0.0917 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain B and resid 7:22) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9928 -6.2512 52.2380 REMARK 3 T TENSOR REMARK 3 T11: -0.0103 T22: 0.1197 REMARK 3 T33: 0.1707 T12: 0.0696 REMARK 3 T13: -0.0411 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.8074 L22: 0.4225 REMARK 3 L33: 0.3983 L12: 0.2310 REMARK 3 L13: 0.0319 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: -0.2654 S12: 0.2162 S13: -0.6575 REMARK 3 S21: -0.1967 S22: 0.3591 S23: 0.0538 REMARK 3 S31: 0.0308 S32: -0.0402 S33: -0.0901 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain B and resid 23:32) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6571 -9.6820 43.9442 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.1486 REMARK 3 T33: 0.2320 T12: -0.1009 REMARK 3 T13: -0.1867 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 1.2006 L22: 0.8857 REMARK 3 L33: 0.3730 L12: -0.0881 REMARK 3 L13: 0.0805 L23: -0.5183 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.1473 S13: 0.2373 REMARK 3 S21: -0.9660 S22: -0.0260 S23: 0.5598 REMARK 3 S31: 0.4225 S32: 0.1920 S33: -0.2996 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain B and resid 33:64) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4481 3.2850 52.5873 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.0469 REMARK 3 T33: 0.1008 T12: 0.0477 REMARK 3 T13: 0.0242 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.5193 L22: 2.6888 REMARK 3 L33: 1.6557 L12: -1.0690 REMARK 3 L13: -0.1969 L23: -1.4019 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.2796 S13: -0.0524 REMARK 3 S21: 0.2505 S22: 0.0371 S23: 0.6483 REMARK 3 S31: -0.5627 S32: 0.0054 S33: -0.0721 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain B and resid 65:79) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2223 19.3630 31.2018 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1577 REMARK 3 T33: 0.1780 T12: -0.0553 REMARK 3 T13: 0.1159 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 1.0441 L22: 0.6590 REMARK 3 L33: 1.2563 L12: 0.7697 REMARK 3 L13: 0.0710 L23: -0.4290 REMARK 3 S TENSOR REMARK 3 S11: 0.4061 S12: -0.3065 S13: 0.3996 REMARK 3 S21: 0.1439 S22: -0.1572 S23: 0.2168 REMARK 3 S31: 0.3007 S32: -0.2932 S33: -0.1214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB069914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5432 REMARK 200 MONOCHROMATOR : TRIUMPH MONOCHROMATOR (BRUKER) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.695 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 8.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CADMIUM SULFATE HYDRATE, 0.1M REMARK 280 HEPES, 1.0M SODIUM ACETATE TRIHYDRATE, 4%(V/V) 2,5 HEXANEDIOL, PH REMARK 280 7.5, OIL-BATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.69500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.71750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.69500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.15250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.71750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 113.15250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 20 REMARK 465 GLN A 96 REMARK 465 ALA A 97 REMARK 465 GLY A 98 REMARK 465 ASN A 99 REMARK 465 GLN A 100 REMARK 465 ARG A 101 REMARK 465 GLU A 102 REMARK 465 VAL A 103 REMARK 465 ARG A 104 REMARK 465 TYR A 105 REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 ASN A 109 REMARK 465 VAL A 110 REMARK 465 ASP A 111 REMARK 465 PRO A 112 REMARK 465 ALA A 113 REMARK 465 SER A 114 REMARK 465 ASP A 115 REMARK 465 VAL A 116 REMARK 465 VAL A 117 REMARK 465 ALA A 118 REMARK 465 ASP A 119 REMARK 465 LEU A 120 REMARK 465 ALA A 121 REMARK 465 ILE A 122 REMARK 465 VAL A 186 REMARK 465 SER A 187 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 HIS B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 PRO B 80 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 95 CB CG CD OE1 OE2 REMARK 480 ASP A 185 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 130.38 60.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 21 ASP A 22 83.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 23 OD2 REMARK 620 2 ASP A 90 OD2 166.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 76 OD2 REMARK 620 2 ASP B 76 OD1 50.8 REMARK 620 3 HOH B 213 O 127.8 101.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 HIS B 69 NE2 90.5 REMARK 620 3 GLU A 52 OE1 51.6 79.0 REMARK 620 4 HOH A 331 O 81.0 131.1 126.2 REMARK 620 5 HOH A 305 O 128.9 87.3 78.1 134.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 GLU A 61 OE2 49.9 REMARK 620 3 HOH A 328 O 89.9 114.6 REMARK 620 4 HOH A 306 O 153.1 105.8 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 94 SG REMARK 620 2 HOH A 313 O 123.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 102 DBREF 3VDO A 1 187 UNP O53730 SIGK_MYCTU 1 187 DBREF 3VDO B 1 80 UNP O53729 RSKA_MYCTU 1 80 SEQRES 1 A 187 MET THR GLY PRO PRO ARG LEU SER SER ASP LEU ASP ALA SEQRES 2 A 187 LEU LEU ARG ARG VAL ALA GLY HIS ASP GLN ALA ALA PHE SEQRES 3 A 187 ALA GLU PHE TYR ASP HIS THR LYS SER ARG VAL TYR GLY SEQRES 4 A 187 LEU VAL MET ARG VAL LEU ARG ASP THR GLY TYR SER GLU SEQRES 5 A 187 GLU THR THR GLN GLU ILE TYR LEU GLU VAL TRP ARG ASN SEQRES 6 A 187 ALA SER GLU PHE ASP SER ALA LYS GLY SER ALA LEU ALA SEQRES 7 A 187 TRP LEU LEU THR MET ALA HIS ARG ARG ALA VAL ASP ARG SEQRES 8 A 187 VAL ARG CYS GLU GLN ALA GLY ASN GLN ARG GLU VAL ARG SEQRES 9 A 187 TYR GLY ALA ALA ASN VAL ASP PRO ALA SER ASP VAL VAL SEQRES 10 A 187 ALA ASP LEU ALA ILE ALA GLY ASP GLU ARG ARG ARG VAL SEQRES 11 A 187 THR GLU CYS LEU LYS ALA LEU THR ASP THR GLN ARG GLN SEQRES 12 A 187 CYS ILE GLU LEU ALA TYR TYR GLY GLY LEU THR TYR VAL SEQRES 13 A 187 GLU VAL SER ARG ARG LEU ALA ALA ASN LEU SER THR ILE SEQRES 14 A 187 LYS SER ARG MET ARG ASP ALA LEU ARG SER LEU ARG ASN SEQRES 15 A 187 CYS LEU ASP VAL SER SEQRES 1 B 80 MET THR GLU HIS THR ASP PHE GLU LEU LEU GLU LEU ALA SEQRES 2 B 80 THR PRO TYR ALA LEU ASN ALA VAL SER ASP ASP GLU ARG SEQRES 3 B 80 ALA ASP ILE ASP ARG ARG VAL ALA ALA ALA PRO SER PRO SEQRES 4 B 80 VAL ALA ALA ALA PHE ASN ASP GLU VAL ARG ALA VAL ARG SEQRES 5 B 80 GLU THR MET ALA VAL VAL SER ALA ALA THR THR ALA GLU SEQRES 6 B 80 PRO PRO ALA HIS LEU ARG THR ALA ILE LEU ASP ALA THR SEQRES 7 B 80 LYS PRO HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD B 101 1 HET CD B 102 1 HETNAM CD CADMIUM ION FORMUL 3 CD 8(CD 2+) FORMUL 11 HOH *90(H2 O) HELIX 1 1 ASP A 10 ALA A 19 1 10 HELIX 2 2 ALA A 24 ARG A 46 1 23 HELIX 3 3 ASP A 47 ASN A 65 1 19 HELIX 4 4 SER A 75 GLU A 95 1 21 HELIX 5 5 GLY A 124 LEU A 137 1 14 HELIX 6 6 THR A 138 TYR A 150 1 13 HELIX 7 7 THR A 154 ALA A 163 1 10 HELIX 8 8 ASN A 165 LEU A 184 1 20 HELIX 9 9 GLU B 8 GLU B 11 5 4 HELIX 10 10 LEU B 12 LEU B 18 1 7 HELIX 11 11 SER B 22 ALA B 36 1 15 HELIX 12 12 PRO B 37 SER B 59 1 23 HELIX 13 13 ALA B 60 THR B 63 5 4 HELIX 14 14 PRO B 67 ALA B 77 1 11 SSBOND 1 CYS A 133 CYS A 183 1555 1555 2.53 LINK SG CYS A 94 CD CD A 202 1555 1555 2.25 LINK OD2 ASP B 23 CD CD B 102 1555 1555 2.39 LINK OD2 ASP B 76 CD CD B 101 1555 1555 2.44 LINK OE2 GLU A 52 CD CD A 203 1555 1555 2.47 LINK NE2 HIS B 69 CD CD A 203 1555 1555 2.49 LINK OE1 GLU A 61 CD CD A 204 1555 1555 2.49 LINK OE1 GLU A 52 CD CD A 203 1555 1555 2.57 LINK OD1 ASP B 76 CD CD B 101 1555 1555 2.66 LINK OE2 GLU A 61 CD CD A 204 1555 1555 2.67 LINK OD2 ASP A 90 CD CD B 102 1555 1555 2.68 LINK SG CYS A 94 CD CD A 201 1555 1555 2.90 LINK CD CD A 204 O HOH A 328 1555 1555 2.38 LINK CD CD A 203 O HOH A 331 1555 1555 2.39 LINK CD CD B 101 O HOH B 213 1555 1555 2.46 LINK CD CD A 204 O HOH A 306 1555 1555 2.53 LINK CD CD A 203 O HOH A 305 1555 1555 2.54 LINK CD CD A 201 O HOH A 313 1555 1555 2.70 SITE 1 AC1 5 ASP A 90 CYS A 94 HOH A 307 HOH A 313 SITE 2 AC1 5 ASP B 28 SITE 1 AC2 4 CYS A 94 ASP B 24 ASP B 28 HOH B 211 SITE 1 AC3 4 GLU A 52 HOH A 305 HOH A 331 HIS B 69 SITE 1 AC4 3 GLU A 61 HOH A 306 HOH A 328 SITE 1 AC5 1 GLU A 28 SITE 1 AC6 3 ASP A 70 GLU A 132 HOH A 332 SITE 1 AC7 4 GLU B 8 GLU B 11 ASP B 76 HOH B 213 SITE 1 AC8 5 ASP A 90 CYS A 94 ASP B 23 ASP B 24 SITE 2 AC8 5 HOH B 206 CRYST1 57.390 57.390 150.870 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006628 0.00000