data_3VDY # _entry.id 3VDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VDY pdb_00003vdy 10.2210/pdb3vdy/pdb NDB NA1593 ? ? RCSB RCSB069924 ? ? WWPDB D_1000069924 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-14 2 'Structure model' 1 1 2012-07-25 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VDY _pdbx_database_status.recvd_initial_deposition_date 2012-01-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yadav, T.' 1 'Carrasco, B.' 2 'Myers, A.R.' 3 'George, N.P.' 4 'Keck, J.L.' 5 'Alonso, J.C.' 6 # _citation.id primary _citation.title 'Genetic recombination in Bacillus subtilis: a division of labor between two single-strand DNA-binding proteins.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 5546 _citation.page_last 5559 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22373918 _citation.pdbx_database_id_DOI 10.1093/nar/gks173 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yadav, T.' 1 ? primary 'Carrasco, B.' 2 ? primary 'Myers, A.R.' 3 ? primary 'George, N.P.' 4 ? primary 'Keck, J.L.' 5 ? primary 'Alonso, J.C.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Single-stranded DNA-binding protein ssbB' 12949.570 2 ? ? ? ? 2 polymer syn "5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'" 10601.791 5 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name SSB # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HHHMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRI QTRSYENEEGVNVYVTEVLADTVRFMDPKPREKAAD ; ;HHHMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRI QTRSYENEEGVNVYVTEVLADTVRFMDPKPREKAAD ; A,B ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) ; TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT C,D,E,F,G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 MET n 1 5 PHE n 1 6 ASN n 1 7 GLN n 1 8 VAL n 1 9 MET n 1 10 LEU n 1 11 VAL n 1 12 GLY n 1 13 ARG n 1 14 LEU n 1 15 THR n 1 16 LYS n 1 17 ASP n 1 18 PRO n 1 19 ASP n 1 20 LEU n 1 21 ARG n 1 22 TYR n 1 23 THR n 1 24 SER n 1 25 ALA n 1 26 GLY n 1 27 ALA n 1 28 ALA n 1 29 VAL n 1 30 ALA n 1 31 HIS n 1 32 VAL n 1 33 THR n 1 34 LEU n 1 35 ALA n 1 36 VAL n 1 37 ASN n 1 38 ARG n 1 39 SER n 1 40 PHE n 1 41 LYS n 1 42 ASN n 1 43 ALA n 1 44 SER n 1 45 GLY n 1 46 GLU n 1 47 ILE n 1 48 GLU n 1 49 ALA n 1 50 ASP n 1 51 TYR n 1 52 VAL n 1 53 ASN n 1 54 CYS n 1 55 THR n 1 56 LEU n 1 57 TRP n 1 58 ARG n 1 59 LYS n 1 60 THR n 1 61 ALA n 1 62 GLU n 1 63 ASN n 1 64 THR n 1 65 ALA n 1 66 LEU n 1 67 TYR n 1 68 CYS n 1 69 GLN n 1 70 LYS n 1 71 GLY n 1 72 SER n 1 73 LEU n 1 74 VAL n 1 75 GLY n 1 76 VAL n 1 77 SER n 1 78 GLY n 1 79 ARG n 1 80 ILE n 1 81 GLN n 1 82 THR n 1 83 ARG n 1 84 SER n 1 85 TYR n 1 86 GLU n 1 87 ASN n 1 88 GLU n 1 89 GLU n 1 90 GLY n 1 91 VAL n 1 92 ASN n 1 93 VAL n 1 94 TYR n 1 95 VAL n 1 96 THR n 1 97 GLU n 1 98 VAL n 1 99 LEU n 1 100 ALA n 1 101 ASP n 1 102 THR n 1 103 VAL n 1 104 ARG n 1 105 PHE n 1 106 MET n 1 107 ASP n 1 108 PRO n 1 109 LYS n 1 110 PRO n 1 111 ARG n 1 112 GLU n 1 113 LYS n 1 114 ALA n 1 115 ALA n 1 116 ASP n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DT n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DT n 2 19 DT n 2 20 DT n 2 21 DT n 2 22 DT n 2 23 DT n 2 24 DT n 2 25 DT n 2 26 DT n 2 27 DT n 2 28 DT n 2 29 DT n 2 30 DT n 2 31 DT n 2 32 DT n 2 33 DT n 2 34 DT n 2 35 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ssbB, ywpH, BSU36310' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Synthetic DNA' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -2 ? ? ? A . n A 1 2 HIS 2 -1 ? ? ? A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 PHE 5 2 2 PHE PHE A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 GLN 7 4 4 GLN GLN A . n A 1 8 VAL 8 5 5 VAL VAL A . n A 1 9 MET 9 6 6 MET MET A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 THR 15 12 12 THR THR A . n A 1 16 LYS 16 13 13 LYS LYS A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 PRO 18 15 15 PRO PRO A . n A 1 19 ASP 19 16 16 ASP ASP A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 ARG 21 18 18 ARG ARG A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 THR 23 20 20 THR THR A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 GLY 26 23 23 GLY GLY A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 HIS 31 28 28 HIS HIS A . n A 1 32 VAL 32 29 29 VAL VAL A . n A 1 33 THR 33 30 30 THR THR A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 ASN 37 34 34 ASN ASN A . n A 1 38 ARG 38 35 35 ARG ARG A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 PHE 40 37 37 PHE PHE A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 ASN 42 39 39 ASN ASN A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 ILE 47 44 44 ILE ILE A . n A 1 48 GLU 48 45 45 GLU GLU A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 TYR 51 48 48 TYR TYR A . n A 1 52 VAL 52 49 49 VAL VAL A . n A 1 53 ASN 53 50 50 ASN ASN A . n A 1 54 CYS 54 51 51 CYS CYS A . n A 1 55 THR 55 52 52 THR THR A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 TRP 57 54 54 TRP TRP A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 TYR 67 64 64 TYR TYR A . n A 1 68 CYS 68 65 65 CYS CYS A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 LYS 70 67 67 LYS LYS A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 ARG 79 76 76 ARG ARG A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 GLN 81 78 78 GLN GLN A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 ARG 83 80 80 ARG ARG A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 TYR 85 82 82 TYR TYR A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 ASN 87 84 ? ? ? A . n A 1 88 GLU 88 85 ? ? ? A . n A 1 89 GLU 89 86 ? ? ? A . n A 1 90 GLY 90 87 ? ? ? A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 ASN 92 89 89 ASN ASN A . n A 1 93 VAL 93 90 90 VAL VAL A . n A 1 94 TYR 94 91 91 TYR TYR A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 THR 96 93 93 THR THR A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 ASP 101 98 98 ASP ASP A . n A 1 102 THR 102 99 99 THR THR A . n A 1 103 VAL 103 100 100 VAL VAL A . n A 1 104 ARG 104 101 101 ARG ARG A . n A 1 105 PHE 105 102 102 PHE PHE A . n A 1 106 MET 106 103 103 MET MET A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 PRO 108 105 ? ? ? A . n A 1 109 LYS 109 106 ? ? ? A . n A 1 110 PRO 110 107 ? ? ? A . n A 1 111 ARG 111 108 ? ? ? A . n A 1 112 GLU 112 109 ? ? ? A . n A 1 113 LYS 113 110 ? ? ? A . n A 1 114 ALA 114 111 ? ? ? A . n A 1 115 ALA 115 112 ? ? ? A . n A 1 116 ASP 116 113 ? ? ? A . n B 1 1 HIS 1 -2 ? ? ? B . n B 1 2 HIS 2 -1 ? ? ? B . n B 1 3 HIS 3 0 ? ? ? B . n B 1 4 MET 4 1 1 MET MET B . n B 1 5 PHE 5 2 2 PHE PHE B . n B 1 6 ASN 6 3 3 ASN ASN B . n B 1 7 GLN 7 4 4 GLN GLN B . n B 1 8 VAL 8 5 5 VAL VAL B . n B 1 9 MET 9 6 6 MET MET B . n B 1 10 LEU 10 7 7 LEU LEU B . n B 1 11 VAL 11 8 8 VAL VAL B . n B 1 12 GLY 12 9 9 GLY GLY B . n B 1 13 ARG 13 10 10 ARG ARG B . n B 1 14 LEU 14 11 11 LEU LEU B . n B 1 15 THR 15 12 12 THR THR B . n B 1 16 LYS 16 13 13 LYS LYS B . n B 1 17 ASP 17 14 14 ASP ASP B . n B 1 18 PRO 18 15 15 PRO PRO B . n B 1 19 ASP 19 16 16 ASP ASP B . n B 1 20 LEU 20 17 17 LEU LEU B . n B 1 21 ARG 21 18 18 ARG ARG B . n B 1 22 TYR 22 19 19 TYR TYR B . n B 1 23 THR 23 20 20 THR THR B . n B 1 24 SER 24 21 21 SER SER B . n B 1 25 ALA 25 22 22 ALA ALA B . n B 1 26 GLY 26 23 23 GLY GLY B . n B 1 27 ALA 27 24 24 ALA ALA B . n B 1 28 ALA 28 25 25 ALA ALA B . n B 1 29 VAL 29 26 26 VAL VAL B . n B 1 30 ALA 30 27 27 ALA ALA B . n B 1 31 HIS 31 28 28 HIS HIS B . n B 1 32 VAL 32 29 29 VAL VAL B . n B 1 33 THR 33 30 30 THR THR B . n B 1 34 LEU 34 31 31 LEU LEU B . n B 1 35 ALA 35 32 32 ALA ALA B . n B 1 36 VAL 36 33 33 VAL VAL B . n B 1 37 ASN 37 34 34 ASN ASN B . n B 1 38 ARG 38 35 35 ARG ARG B . n B 1 39 SER 39 36 36 SER SER B . n B 1 40 PHE 40 37 37 PHE PHE B . n B 1 41 LYS 41 38 38 LYS LYS B . n B 1 42 ASN 42 39 39 ASN ASN B . n B 1 43 ALA 43 40 40 ALA ALA B . n B 1 44 SER 44 41 41 SER SER B . n B 1 45 GLY 45 42 42 GLY GLY B . n B 1 46 GLU 46 43 43 GLU GLU B . n B 1 47 ILE 47 44 44 ILE ILE B . n B 1 48 GLU 48 45 45 GLU GLU B . n B 1 49 ALA 49 46 46 ALA ALA B . n B 1 50 ASP 50 47 47 ASP ASP B . n B 1 51 TYR 51 48 48 TYR TYR B . n B 1 52 VAL 52 49 49 VAL VAL B . n B 1 53 ASN 53 50 50 ASN ASN B . n B 1 54 CYS 54 51 51 CYS CYS B . n B 1 55 THR 55 52 52 THR THR B . n B 1 56 LEU 56 53 53 LEU LEU B . n B 1 57 TRP 57 54 54 TRP TRP B . n B 1 58 ARG 58 55 55 ARG ARG B . n B 1 59 LYS 59 56 56 LYS LYS B . n B 1 60 THR 60 57 57 THR THR B . n B 1 61 ALA 61 58 58 ALA ALA B . n B 1 62 GLU 62 59 59 GLU GLU B . n B 1 63 ASN 63 60 60 ASN ASN B . n B 1 64 THR 64 61 61 THR THR B . n B 1 65 ALA 65 62 62 ALA ALA B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 TYR 67 64 64 TYR TYR B . n B 1 68 CYS 68 65 65 CYS CYS B . n B 1 69 GLN 69 66 66 GLN GLN B . n B 1 70 LYS 70 67 67 LYS LYS B . n B 1 71 GLY 71 68 68 GLY GLY B . n B 1 72 SER 72 69 69 SER SER B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 VAL 74 71 71 VAL VAL B . n B 1 75 GLY 75 72 72 GLY GLY B . n B 1 76 VAL 76 73 73 VAL VAL B . n B 1 77 SER 77 74 74 SER SER B . n B 1 78 GLY 78 75 75 GLY GLY B . n B 1 79 ARG 79 76 76 ARG ARG B . n B 1 80 ILE 80 77 77 ILE ILE B . n B 1 81 GLN 81 78 78 GLN GLN B . n B 1 82 THR 82 79 79 THR THR B . n B 1 83 ARG 83 80 80 ARG ARG B . n B 1 84 SER 84 81 ? ? ? B . n B 1 85 TYR 85 82 ? ? ? B . n B 1 86 GLU 86 83 ? ? ? B . n B 1 87 ASN 87 84 ? ? ? B . n B 1 88 GLU 88 85 ? ? ? B . n B 1 89 GLU 89 86 ? ? ? B . n B 1 90 GLY 90 87 ? ? ? B . n B 1 91 VAL 91 88 ? ? ? B . n B 1 92 ASN 92 89 89 ASN ASN B . n B 1 93 VAL 93 90 90 VAL VAL B . n B 1 94 TYR 94 91 91 TYR TYR B . n B 1 95 VAL 95 92 92 VAL VAL B . n B 1 96 THR 96 93 93 THR THR B . n B 1 97 GLU 97 94 94 GLU GLU B . n B 1 98 VAL 98 95 95 VAL VAL B . n B 1 99 LEU 99 96 96 LEU LEU B . n B 1 100 ALA 100 97 97 ALA ALA B . n B 1 101 ASP 101 98 98 ASP ASP B . n B 1 102 THR 102 99 99 THR THR B . n B 1 103 VAL 103 100 100 VAL VAL B . n B 1 104 ARG 104 101 101 ARG ARG B . n B 1 105 PHE 105 102 102 PHE PHE B . n B 1 106 MET 106 103 103 MET MET B . n B 1 107 ASP 107 104 104 ASP ASP B . n B 1 108 PRO 108 105 105 PRO PRO B . n B 1 109 LYS 109 106 ? ? ? B . n B 1 110 PRO 110 107 ? ? ? B . n B 1 111 ARG 111 108 ? ? ? B . n B 1 112 GLU 112 109 ? ? ? B . n B 1 113 LYS 113 110 ? ? ? B . n B 1 114 ALA 114 111 ? ? ? B . n B 1 115 ALA 115 112 ? ? ? B . n B 1 116 ASP 116 113 ? ? ? B . n C 2 1 DT 1 5 8 DT DT C . n C 2 2 DT 2 6 7 DT DT C . n C 2 3 DT 3 7 6 DT DT C . n C 2 4 DT 4 8 5 DT DT C . n C 2 5 DT 5 9 ? ? ? C . n C 2 6 DT 6 10 ? ? ? C . n C 2 7 DT 7 11 ? ? ? C . n C 2 8 DT 8 12 ? ? ? C . n C 2 9 DT 9 13 ? ? ? C . n C 2 10 DT 10 14 ? ? ? C . n C 2 11 DT 11 15 ? ? ? C . n C 2 12 DT 12 16 ? ? ? C . n C 2 13 DT 13 17 ? ? ? C . n C 2 14 DT 14 18 ? ? ? C . n C 2 15 DT 15 19 ? ? ? C . n C 2 16 DT 16 20 ? ? ? C . n C 2 17 DT 17 21 ? ? ? C . n C 2 18 DT 18 22 ? ? ? C . n C 2 19 DT 19 23 ? ? ? C . n C 2 20 DT 20 24 ? ? ? C . n C 2 21 DT 21 25 ? ? ? C . n C 2 22 DT 22 26 ? ? ? C . n C 2 23 DT 23 27 ? ? ? C . n C 2 24 DT 24 28 ? ? ? C . n C 2 25 DT 25 29 ? ? ? C . n C 2 26 DT 26 30 ? ? ? C . n C 2 27 DT 27 31 ? ? ? C . n C 2 28 DT 28 32 ? ? ? C . n C 2 29 DT 29 33 ? ? ? C . n C 2 30 DT 30 34 ? ? ? C . n C 2 31 DT 31 35 ? ? ? C . n C 2 32 DT 32 36 ? ? ? C . n C 2 33 DT 33 37 ? ? ? C . n C 2 34 DT 34 38 ? ? ? C . n C 2 35 DT 35 39 ? ? ? C . n D 2 1 DT 1 1 1 DT DT D . n D 2 2 DT 2 2 2 DT DT D . n D 2 3 DT 3 3 3 DT DT D . n D 2 4 DT 4 4 ? ? ? D . n D 2 5 DT 5 5 ? ? ? D . n D 2 6 DT 6 6 ? ? ? D . n D 2 7 DT 7 7 ? ? ? D . n D 2 8 DT 8 8 ? ? ? D . n D 2 9 DT 9 9 ? ? ? D . n D 2 10 DT 10 10 ? ? ? D . n D 2 11 DT 11 11 ? ? ? D . n D 2 12 DT 12 12 ? ? ? D . n D 2 13 DT 13 13 ? ? ? D . n D 2 14 DT 14 14 ? ? ? D . n D 2 15 DT 15 15 ? ? ? D . n D 2 16 DT 16 16 ? ? ? D . n D 2 17 DT 17 17 ? ? ? D . n D 2 18 DT 18 18 ? ? ? D . n D 2 19 DT 19 19 ? ? ? D . n D 2 20 DT 20 20 ? ? ? D . n D 2 21 DT 21 21 ? ? ? D . n D 2 22 DT 22 22 ? ? ? D . n D 2 23 DT 23 23 ? ? ? D . n D 2 24 DT 24 24 ? ? ? D . n D 2 25 DT 25 25 ? ? ? D . n D 2 26 DT 26 26 ? ? ? D . n D 2 27 DT 27 27 ? ? ? D . n D 2 28 DT 28 28 ? ? ? D . n D 2 29 DT 29 29 ? ? ? D . n D 2 30 DT 30 30 ? ? ? D . n D 2 31 DT 31 31 ? ? ? D . n D 2 32 DT 32 32 ? ? ? D . n D 2 33 DT 33 33 ? ? ? D . n D 2 34 DT 34 34 ? ? ? D . n D 2 35 DT 35 35 ? ? ? D . n E 2 1 DT 1 12 12 DT DT E . n E 2 2 DT 2 13 13 DT DT E . n E 2 3 DT 3 14 14 DT DT E . n E 2 4 DT 4 15 15 DT DT E . n E 2 5 DT 5 16 ? ? ? E . n E 2 6 DT 6 17 ? ? ? E . n E 2 7 DT 7 18 ? ? ? E . n E 2 8 DT 8 19 ? ? ? E . n E 2 9 DT 9 20 ? ? ? E . n E 2 10 DT 10 21 ? ? ? E . n E 2 11 DT 11 22 ? ? ? E . n E 2 12 DT 12 23 ? ? ? E . n E 2 13 DT 13 24 ? ? ? E . n E 2 14 DT 14 25 ? ? ? E . n E 2 15 DT 15 26 ? ? ? E . n E 2 16 DT 16 27 ? ? ? E . n E 2 17 DT 17 28 ? ? ? E . n E 2 18 DT 18 29 ? ? ? E . n E 2 19 DT 19 30 ? ? ? E . n E 2 20 DT 20 31 ? ? ? E . n E 2 21 DT 21 32 ? ? ? E . n E 2 22 DT 22 33 ? ? ? E . n E 2 23 DT 23 34 ? ? ? E . n E 2 24 DT 24 35 ? ? ? E . n E 2 25 DT 25 36 ? ? ? E . n E 2 26 DT 26 37 ? ? ? E . n E 2 27 DT 27 38 ? ? ? E . n E 2 28 DT 28 39 ? ? ? E . n E 2 29 DT 29 40 ? ? ? E . n E 2 30 DT 30 41 ? ? ? E . n E 2 31 DT 31 42 ? ? ? E . n E 2 32 DT 32 43 ? ? ? E . n E 2 33 DT 33 44 ? ? ? E . n E 2 34 DT 34 45 ? ? ? E . n E 2 35 DT 35 46 ? ? ? E . n F 2 1 DT 1 1 1 DT DT F . n F 2 2 DT 2 2 2 DT DT F . n F 2 3 DT 3 3 3 DT DT F . n F 2 4 DT 4 4 4 DT DT F . n F 2 5 DT 5 5 5 DT DT F . n F 2 6 DT 6 6 6 DT DT F . n F 2 7 DT 7 7 7 DT DT F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DT 9 9 9 DT DT F . n F 2 10 DT 10 10 10 DT DT F . n F 2 11 DT 11 11 ? ? ? F . n F 2 12 DT 12 12 ? ? ? F . n F 2 13 DT 13 13 ? ? ? F . n F 2 14 DT 14 14 ? ? ? F . n F 2 15 DT 15 15 ? ? ? F . n F 2 16 DT 16 16 ? ? ? F . n F 2 17 DT 17 17 ? ? ? F . n F 2 18 DT 18 18 ? ? ? F . n F 2 19 DT 19 19 ? ? ? F . n F 2 20 DT 20 20 ? ? ? F . n F 2 21 DT 21 21 ? ? ? F . n F 2 22 DT 22 22 ? ? ? F . n F 2 23 DT 23 23 ? ? ? F . n F 2 24 DT 24 24 ? ? ? F . n F 2 25 DT 25 25 ? ? ? F . n F 2 26 DT 26 26 ? ? ? F . n F 2 27 DT 27 27 ? ? ? F . n F 2 28 DT 28 28 ? ? ? F . n F 2 29 DT 29 29 ? ? ? F . n F 2 30 DT 30 30 ? ? ? F . n F 2 31 DT 31 31 ? ? ? F . n F 2 32 DT 32 32 ? ? ? F . n F 2 33 DT 33 33 ? ? ? F . n F 2 34 DT 34 34 ? ? ? F . n F 2 35 DT 35 35 ? ? ? F . n G 2 1 DT 1 14 14 DT DT G . n G 2 2 DT 2 15 15 DT DT G . n G 2 3 DT 3 16 16 DT DT G . n G 2 4 DT 4 17 ? ? ? G . n G 2 5 DT 5 18 ? ? ? G . n G 2 6 DT 6 19 ? ? ? G . n G 2 7 DT 7 20 ? ? ? G . n G 2 8 DT 8 21 ? ? ? G . n G 2 9 DT 9 22 ? ? ? G . n G 2 10 DT 10 23 ? ? ? G . n G 2 11 DT 11 24 ? ? ? G . n G 2 12 DT 12 25 ? ? ? G . n G 2 13 DT 13 26 ? ? ? G . n G 2 14 DT 14 27 ? ? ? G . n G 2 15 DT 15 28 ? ? ? G . n G 2 16 DT 16 29 ? ? ? G . n G 2 17 DT 17 30 ? ? ? G . n G 2 18 DT 18 31 ? ? ? G . n G 2 19 DT 19 32 ? ? ? G . n G 2 20 DT 20 33 ? ? ? G . n G 2 21 DT 21 34 ? ? ? G . n G 2 22 DT 22 35 ? ? ? G . n G 2 23 DT 23 36 ? ? ? G . n G 2 24 DT 24 37 ? ? ? G . n G 2 25 DT 25 38 ? ? ? G . n G 2 26 DT 26 39 ? ? ? G . n G 2 27 DT 27 40 ? ? ? G . n G 2 28 DT 28 41 ? ? ? G . n G 2 29 DT 29 42 ? ? ? G . n G 2 30 DT 30 43 ? ? ? G . n G 2 31 DT 31 44 ? ? ? G . n G 2 32 DT 32 45 ? ? ? G . n G 2 33 DT 33 46 ? ? ? G . n G 2 34 DT 34 47 ? ? ? G . n G 2 35 DT 35 48 ? ? ? G . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.6.0119 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 3VDY _cell.length_a 101.753 _cell.length_b 101.753 _cell.length_c 118.571 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VDY _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VDY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '50 mM NaAcetate, pH 5.6, 10 mM MgCl(2), 1.8 M Ammonium sulfate, 10% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.53 1.0 2 1.008 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.53, 1.008' # _reflns.entry_id 3VDY _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 15468 _reflns.number_all 15881 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 71.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VDY _refine.ls_number_reflns_obs 14643 _refine.ls_number_reflns_all 15881 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 96.95 _refine.ls_R_factor_obs 0.23151 _refine.ls_R_factor_all 0.23151 _refine.ls_R_factor_R_work 0.22993 _refine.ls_R_factor_R_free 0.26177 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 777 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 88.064 _refine.aniso_B[1][1] -1.70 _refine.aniso_B[2][2] -1.70 _refine.aniso_B[3][3] 3.40 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.367 _refine.pdbx_overall_ESU_R_Free 0.280 _refine.overall_SU_ML 0.176 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.397 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1537 _refine_hist.pdbx_number_atoms_nucleic_acid 480 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2017 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.017 ? 2081 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.442 1.792 ? 2905 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.585 5.000 ? 194 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36.805 23.239 ? 71 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 21.557 15.000 ? 262 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.682 15.000 ? 14 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.102 0.200 ? 321 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 1398 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.801 _refine_ls_shell.d_res_low 2.872 _refine_ls_shell.number_reflns_R_work 728 _refine_ls_shell.R_factor_R_work 0.371 _refine_ls_shell.percent_reflns_obs 72.84 _refine_ls_shell.R_factor_R_free 0.515 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3VDY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VDY _struct.title 'B. subtilis SsbB/ssDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VDY _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'OB fold, single-strand DNA binding, ssDNA, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SSB2_BACSU C0SPB6 1 ;MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD ; 1 ? 2 PDB 3VDY 3VDY 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VDY A 4 ? 116 ? C0SPB6 1 ? 113 ? 1 113 2 1 3VDY B 4 ? 116 ? C0SPB6 1 ? 113 ? 1 113 3 2 3VDY C 1 ? 35 ? 3VDY 5 ? 39 ? 5 39 4 2 3VDY D 1 ? 35 ? 3VDY 1 ? 35 ? 1 35 5 2 3VDY E 1 ? 35 ? 3VDY 12 ? 46 ? 12 46 6 2 3VDY F 1 ? 35 ? 3VDY 1 ? 35 ? 1 35 7 2 3VDY G 1 ? 35 ? 3VDY 14 ? 48 ? 14 48 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VDY HIS A 1 ? UNP C0SPB6 ? ? 'expression tag' -2 1 1 3VDY HIS A 2 ? UNP C0SPB6 ? ? 'expression tag' -1 2 1 3VDY HIS A 3 ? UNP C0SPB6 ? ? 'expression tag' 0 3 2 3VDY HIS B 1 ? UNP C0SPB6 ? ? 'expression tag' -2 4 2 3VDY HIS B 2 ? UNP C0SPB6 ? ? 'expression tag' -1 5 2 3VDY HIS B 3 ? UNP C0SPB6 ? ? 'expression tag' 0 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.5710000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 58 ? CYS A 68 ? ARG A 55 CYS A 65 1 ? 11 HELX_P HELX_P2 2 ARG B 58 ? CYS B 68 ? ARG B 55 CYS B 65 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 19 ? TYR A 22 ? ASP A 16 TYR A 19 A 2 ALA A 28 ? ASN A 37 ? ALA A 25 ASN A 34 A 3 ALA A 49 ? TRP A 57 ? ALA A 46 TRP A 54 A 4 VAL A 93 ? PHE A 105 ? VAL A 90 PHE A 102 A 5 LEU A 73 ? TYR A 85 ? LEU A 70 TYR A 82 A 6 VAL A 8 ? LEU A 14 ? VAL A 5 LEU A 11 A 7 ALA A 28 ? ASN A 37 ? ALA A 25 ASN A 34 B 1 ASP B 19 ? TYR B 22 ? ASP B 16 TYR B 19 B 2 ALA B 28 ? ASN B 37 ? ALA B 25 ASN B 34 B 3 ALA B 49 ? TRP B 57 ? ALA B 46 TRP B 54 B 4 VAL B 95 ? PHE B 105 ? VAL B 92 PHE B 102 B 5 LEU B 73 ? ARG B 83 ? LEU B 70 ARG B 80 B 6 VAL B 8 ? LEU B 14 ? VAL B 5 LEU B 11 B 7 ALA B 28 ? ASN B 37 ? ALA B 25 ASN B 34 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 21 ? N ARG A 18 O VAL A 29 ? O VAL A 26 A 2 3 N LEU A 34 ? N LEU A 31 O VAL A 52 ? O VAL A 49 A 3 4 N ASN A 53 ? N ASN A 50 O VAL A 98 ? O VAL A 95 A 4 5 O LEU A 99 ? O LEU A 96 N ARG A 79 ? N ARG A 76 A 5 6 O VAL A 76 ? O VAL A 73 N LEU A 10 ? N LEU A 7 A 6 7 N ARG A 13 ? N ARG A 10 O ALA A 35 ? O ALA A 32 B 1 2 N ARG B 21 ? N ARG B 18 O VAL B 29 ? O VAL B 26 B 2 3 N VAL B 32 ? N VAL B 29 O CYS B 54 ? O CYS B 51 B 3 4 N THR B 55 ? N THR B 52 O VAL B 98 ? O VAL B 95 B 4 5 O GLU B 97 ? O GLU B 94 N GLN B 81 ? N GLN B 78 B 5 6 O VAL B 74 ? O VAL B 71 N GLY B 12 ? N GLY B 9 B 6 7 N ARG B 13 ? N ARG B 10 O ALA B 35 ? O ALA B 32 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 55 ? ? 48.96 -138.39 2 1 ARG B 55 ? ? 47.63 -130.70 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 38.8299 21.7127 64.3298 0.0347 0.1029 0.0703 0.0480 -0.0252 -0.0047 2.2941 2.5083 4.1405 0.2537 0.6611 0.2757 0.0554 -0.1598 -0.1563 0.0537 -0.1002 -0.2450 0.2706 0.4005 0.0448 'X-RAY DIFFRACTION' 2 ? refined 11.6462 28.4062 69.2863 0.0592 0.1211 0.0535 0.0655 0.0102 0.0190 3.8193 2.4601 3.0563 0.9658 -1.1450 -0.3870 -0.0766 -0.1013 0.1288 0.2105 -0.0007 0.0906 -0.2485 -0.3848 0.0773 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 104 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 F 1 ? ? F 10 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 E 12 ? ? E 15 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 B 1 ? ? B 105 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 C 5 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 G 14 ? ? G 16 ? ? ? ? 'X-RAY DIFFRACTION' 7 2 D 1 ? ? D 3 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -2 ? A HIS 1 2 1 Y 1 A HIS -1 ? A HIS 2 3 1 Y 1 A ASN 84 ? A ASN 87 4 1 Y 1 A GLU 85 ? A GLU 88 5 1 Y 1 A GLU 86 ? A GLU 89 6 1 Y 1 A GLY 87 ? A GLY 90 7 1 Y 1 A PRO 105 ? A PRO 108 8 1 Y 1 A LYS 106 ? A LYS 109 9 1 Y 1 A PRO 107 ? A PRO 110 10 1 Y 1 A ARG 108 ? A ARG 111 11 1 Y 1 A GLU 109 ? A GLU 112 12 1 Y 1 A LYS 110 ? A LYS 113 13 1 Y 1 A ALA 111 ? A ALA 114 14 1 Y 1 A ALA 112 ? A ALA 115 15 1 Y 1 A ASP 113 ? A ASP 116 16 1 Y 1 B HIS -2 ? B HIS 1 17 1 Y 1 B HIS -1 ? B HIS 2 18 1 Y 1 B HIS 0 ? B HIS 3 19 1 Y 1 B SER 81 ? B SER 84 20 1 Y 1 B TYR 82 ? B TYR 85 21 1 Y 1 B GLU 83 ? B GLU 86 22 1 Y 1 B ASN 84 ? B ASN 87 23 1 Y 1 B GLU 85 ? B GLU 88 24 1 Y 1 B GLU 86 ? B GLU 89 25 1 Y 1 B GLY 87 ? B GLY 90 26 1 Y 1 B VAL 88 ? B VAL 91 27 1 Y 1 B LYS 106 ? B LYS 109 28 1 Y 1 B PRO 107 ? B PRO 110 29 1 Y 1 B ARG 108 ? B ARG 111 30 1 Y 1 B GLU 109 ? B GLU 112 31 1 Y 1 B LYS 110 ? B LYS 113 32 1 Y 1 B ALA 111 ? B ALA 114 33 1 Y 1 B ALA 112 ? B ALA 115 34 1 Y 1 B ASP 113 ? B ASP 116 35 1 Y 1 C DT 9 ? C DT 5 36 1 Y 1 C DT 10 ? C DT 6 37 1 Y 1 C DT 11 ? C DT 7 38 1 Y 1 C DT 12 ? C DT 8 39 1 Y 1 C DT 13 ? C DT 9 40 1 Y 1 C DT 14 ? C DT 10 41 1 Y 1 C DT 15 ? C DT 11 42 1 Y 1 C DT 16 ? C DT 12 43 1 Y 1 C DT 17 ? C DT 13 44 1 Y 1 C DT 18 ? C DT 14 45 1 Y 1 C DT 19 ? C DT 15 46 1 Y 1 C DT 20 ? C DT 16 47 1 Y 1 C DT 21 ? C DT 17 48 1 Y 1 C DT 22 ? C DT 18 49 1 Y 1 C DT 23 ? C DT 19 50 1 Y 1 C DT 24 ? C DT 20 51 1 Y 1 C DT 25 ? C DT 21 52 1 Y 1 C DT 26 ? C DT 22 53 1 Y 1 C DT 27 ? C DT 23 54 1 Y 1 C DT 28 ? C DT 24 55 1 Y 1 C DT 29 ? C DT 25 56 1 Y 1 C DT 30 ? C DT 26 57 1 Y 1 C DT 31 ? C DT 27 58 1 Y 1 C DT 32 ? C DT 28 59 1 Y 1 C DT 33 ? C DT 29 60 1 Y 1 C DT 34 ? C DT 30 61 1 Y 1 C DT 35 ? C DT 31 62 1 Y 1 C DT 36 ? C DT 32 63 1 Y 1 C DT 37 ? C DT 33 64 1 Y 1 C DT 38 ? C DT 34 65 1 Y 1 C DT 39 ? C DT 35 66 1 Y 1 D DT 4 ? D DT 4 67 1 Y 1 D DT 5 ? D DT 5 68 1 Y 1 D DT 6 ? D DT 6 69 1 Y 1 D DT 7 ? D DT 7 70 1 Y 1 D DT 8 ? D DT 8 71 1 Y 1 D DT 9 ? D DT 9 72 1 Y 1 D DT 10 ? D DT 10 73 1 Y 1 D DT 11 ? D DT 11 74 1 Y 1 D DT 12 ? D DT 12 75 1 Y 1 D DT 13 ? D DT 13 76 1 Y 1 D DT 14 ? D DT 14 77 1 Y 1 D DT 15 ? D DT 15 78 1 Y 1 D DT 16 ? D DT 16 79 1 Y 1 D DT 17 ? D DT 17 80 1 Y 1 D DT 18 ? D DT 18 81 1 Y 1 D DT 19 ? D DT 19 82 1 Y 1 D DT 20 ? D DT 20 83 1 Y 1 D DT 21 ? D DT 21 84 1 Y 1 D DT 22 ? D DT 22 85 1 Y 1 D DT 23 ? D DT 23 86 1 Y 1 D DT 24 ? D DT 24 87 1 Y 1 D DT 25 ? D DT 25 88 1 Y 1 D DT 26 ? D DT 26 89 1 Y 1 D DT 27 ? D DT 27 90 1 Y 1 D DT 28 ? D DT 28 91 1 Y 1 D DT 29 ? D DT 29 92 1 Y 1 D DT 30 ? D DT 30 93 1 Y 1 D DT 31 ? D DT 31 94 1 Y 1 D DT 32 ? D DT 32 95 1 Y 1 D DT 33 ? D DT 33 96 1 Y 1 D DT 34 ? D DT 34 97 1 Y 1 D DT 35 ? D DT 35 98 1 Y 1 E DT 16 ? E DT 5 99 1 Y 1 E DT 17 ? E DT 6 100 1 Y 1 E DT 18 ? E DT 7 101 1 Y 1 E DT 19 ? E DT 8 102 1 Y 1 E DT 20 ? E DT 9 103 1 Y 1 E DT 21 ? E DT 10 104 1 Y 1 E DT 22 ? E DT 11 105 1 Y 1 E DT 23 ? E DT 12 106 1 Y 1 E DT 24 ? E DT 13 107 1 Y 1 E DT 25 ? E DT 14 108 1 Y 1 E DT 26 ? E DT 15 109 1 Y 1 E DT 27 ? E DT 16 110 1 Y 1 E DT 28 ? E DT 17 111 1 Y 1 E DT 29 ? E DT 18 112 1 Y 1 E DT 30 ? E DT 19 113 1 Y 1 E DT 31 ? E DT 20 114 1 Y 1 E DT 32 ? E DT 21 115 1 Y 1 E DT 33 ? E DT 22 116 1 Y 1 E DT 34 ? E DT 23 117 1 Y 1 E DT 35 ? E DT 24 118 1 Y 1 E DT 36 ? E DT 25 119 1 Y 1 E DT 37 ? E DT 26 120 1 Y 1 E DT 38 ? E DT 27 121 1 Y 1 E DT 39 ? E DT 28 122 1 Y 1 E DT 40 ? E DT 29 123 1 Y 1 E DT 41 ? E DT 30 124 1 Y 1 E DT 42 ? E DT 31 125 1 Y 1 E DT 43 ? E DT 32 126 1 Y 1 E DT 44 ? E DT 33 127 1 Y 1 E DT 45 ? E DT 34 128 1 Y 1 E DT 46 ? E DT 35 129 1 Y 1 F DT 11 ? F DT 11 130 1 Y 1 F DT 12 ? F DT 12 131 1 Y 1 F DT 13 ? F DT 13 132 1 Y 1 F DT 14 ? F DT 14 133 1 Y 1 F DT 15 ? F DT 15 134 1 Y 1 F DT 16 ? F DT 16 135 1 Y 1 F DT 17 ? F DT 17 136 1 Y 1 F DT 18 ? F DT 18 137 1 Y 1 F DT 19 ? F DT 19 138 1 Y 1 F DT 20 ? F DT 20 139 1 Y 1 F DT 21 ? F DT 21 140 1 Y 1 F DT 22 ? F DT 22 141 1 Y 1 F DT 23 ? F DT 23 142 1 Y 1 F DT 24 ? F DT 24 143 1 Y 1 F DT 25 ? F DT 25 144 1 Y 1 F DT 26 ? F DT 26 145 1 Y 1 F DT 27 ? F DT 27 146 1 Y 1 F DT 28 ? F DT 28 147 1 Y 1 F DT 29 ? F DT 29 148 1 Y 1 F DT 30 ? F DT 30 149 1 Y 1 F DT 31 ? F DT 31 150 1 Y 1 F DT 32 ? F DT 32 151 1 Y 1 F DT 33 ? F DT 33 152 1 Y 1 F DT 34 ? F DT 34 153 1 Y 1 F DT 35 ? F DT 35 154 1 Y 1 G DT 17 ? G DT 4 155 1 Y 1 G DT 18 ? G DT 5 156 1 Y 1 G DT 19 ? G DT 6 157 1 Y 1 G DT 20 ? G DT 7 158 1 Y 1 G DT 21 ? G DT 8 159 1 Y 1 G DT 22 ? G DT 9 160 1 Y 1 G DT 23 ? G DT 10 161 1 Y 1 G DT 24 ? G DT 11 162 1 Y 1 G DT 25 ? G DT 12 163 1 Y 1 G DT 26 ? G DT 13 164 1 Y 1 G DT 27 ? G DT 14 165 1 Y 1 G DT 28 ? G DT 15 166 1 Y 1 G DT 29 ? G DT 16 167 1 Y 1 G DT 30 ? G DT 17 168 1 Y 1 G DT 31 ? G DT 18 169 1 Y 1 G DT 32 ? G DT 19 170 1 Y 1 G DT 33 ? G DT 20 171 1 Y 1 G DT 34 ? G DT 21 172 1 Y 1 G DT 35 ? G DT 22 173 1 Y 1 G DT 36 ? G DT 23 174 1 Y 1 G DT 37 ? G DT 24 175 1 Y 1 G DT 38 ? G DT 25 176 1 Y 1 G DT 39 ? G DT 26 177 1 Y 1 G DT 40 ? G DT 27 178 1 Y 1 G DT 41 ? G DT 28 179 1 Y 1 G DT 42 ? G DT 29 180 1 Y 1 G DT 43 ? G DT 30 181 1 Y 1 G DT 44 ? G DT 31 182 1 Y 1 G DT 45 ? G DT 32 183 1 Y 1 G DT 46 ? G DT 33 184 1 Y 1 G DT 47 ? G DT 34 185 1 Y 1 G DT 48 ? G DT 35 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DT OP3 O N N 88 DT P P N N 89 DT OP1 O N N 90 DT OP2 O N N 91 DT "O5'" O N N 92 DT "C5'" C N N 93 DT "C4'" C N R 94 DT "O4'" O N N 95 DT "C3'" C N S 96 DT "O3'" O N N 97 DT "C2'" C N N 98 DT "C1'" C N R 99 DT N1 N N N 100 DT C2 C N N 101 DT O2 O N N 102 DT N3 N N N 103 DT C4 C N N 104 DT O4 O N N 105 DT C5 C N N 106 DT C7 C N N 107 DT C6 C N N 108 DT HOP3 H N N 109 DT HOP2 H N N 110 DT "H5'" H N N 111 DT "H5''" H N N 112 DT "H4'" H N N 113 DT "H3'" H N N 114 DT "HO3'" H N N 115 DT "H2'" H N N 116 DT "H2''" H N N 117 DT "H1'" H N N 118 DT H3 H N N 119 DT H71 H N N 120 DT H72 H N N 121 DT H73 H N N 122 DT H6 H N N 123 GLN N N N N 124 GLN CA C N S 125 GLN C C N N 126 GLN O O N N 127 GLN CB C N N 128 GLN CG C N N 129 GLN CD C N N 130 GLN OE1 O N N 131 GLN NE2 N N N 132 GLN OXT O N N 133 GLN H H N N 134 GLN H2 H N N 135 GLN HA H N N 136 GLN HB2 H N N 137 GLN HB3 H N N 138 GLN HG2 H N N 139 GLN HG3 H N N 140 GLN HE21 H N N 141 GLN HE22 H N N 142 GLN HXT H N N 143 GLU N N N N 144 GLU CA C N S 145 GLU C C N N 146 GLU O O N N 147 GLU CB C N N 148 GLU CG C N N 149 GLU CD C N N 150 GLU OE1 O N N 151 GLU OE2 O N N 152 GLU OXT O N N 153 GLU H H N N 154 GLU H2 H N N 155 GLU HA H N N 156 GLU HB2 H N N 157 GLU HB3 H N N 158 GLU HG2 H N N 159 GLU HG3 H N N 160 GLU HE2 H N N 161 GLU HXT H N N 162 GLY N N N N 163 GLY CA C N N 164 GLY C C N N 165 GLY O O N N 166 GLY OXT O N N 167 GLY H H N N 168 GLY H2 H N N 169 GLY HA2 H N N 170 GLY HA3 H N N 171 GLY HXT H N N 172 HIS N N N N 173 HIS CA C N S 174 HIS C C N N 175 HIS O O N N 176 HIS CB C N N 177 HIS CG C Y N 178 HIS ND1 N Y N 179 HIS CD2 C Y N 180 HIS CE1 C Y N 181 HIS NE2 N Y N 182 HIS OXT O N N 183 HIS H H N N 184 HIS H2 H N N 185 HIS HA H N N 186 HIS HB2 H N N 187 HIS HB3 H N N 188 HIS HD1 H N N 189 HIS HD2 H N N 190 HIS HE1 H N N 191 HIS HE2 H N N 192 HIS HXT H N N 193 ILE N N N N 194 ILE CA C N S 195 ILE C C N N 196 ILE O O N N 197 ILE CB C N S 198 ILE CG1 C N N 199 ILE CG2 C N N 200 ILE CD1 C N N 201 ILE OXT O N N 202 ILE H H N N 203 ILE H2 H N N 204 ILE HA H N N 205 ILE HB H N N 206 ILE HG12 H N N 207 ILE HG13 H N N 208 ILE HG21 H N N 209 ILE HG22 H N N 210 ILE HG23 H N N 211 ILE HD11 H N N 212 ILE HD12 H N N 213 ILE HD13 H N N 214 ILE HXT H N N 215 LEU N N N N 216 LEU CA C N S 217 LEU C C N N 218 LEU O O N N 219 LEU CB C N N 220 LEU CG C N N 221 LEU CD1 C N N 222 LEU CD2 C N N 223 LEU OXT O N N 224 LEU H H N N 225 LEU H2 H N N 226 LEU HA H N N 227 LEU HB2 H N N 228 LEU HB3 H N N 229 LEU HG H N N 230 LEU HD11 H N N 231 LEU HD12 H N N 232 LEU HD13 H N N 233 LEU HD21 H N N 234 LEU HD22 H N N 235 LEU HD23 H N N 236 LEU HXT H N N 237 LYS N N N N 238 LYS CA C N S 239 LYS C C N N 240 LYS O O N N 241 LYS CB C N N 242 LYS CG C N N 243 LYS CD C N N 244 LYS CE C N N 245 LYS NZ N N N 246 LYS OXT O N N 247 LYS H H N N 248 LYS H2 H N N 249 LYS HA H N N 250 LYS HB2 H N N 251 LYS HB3 H N N 252 LYS HG2 H N N 253 LYS HG3 H N N 254 LYS HD2 H N N 255 LYS HD3 H N N 256 LYS HE2 H N N 257 LYS HE3 H N N 258 LYS HZ1 H N N 259 LYS HZ2 H N N 260 LYS HZ3 H N N 261 LYS HXT H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TRP N N N N 354 TRP CA C N S 355 TRP C C N N 356 TRP O O N N 357 TRP CB C N N 358 TRP CG C Y N 359 TRP CD1 C Y N 360 TRP CD2 C Y N 361 TRP NE1 N Y N 362 TRP CE2 C Y N 363 TRP CE3 C Y N 364 TRP CZ2 C Y N 365 TRP CZ3 C Y N 366 TRP CH2 C Y N 367 TRP OXT O N N 368 TRP H H N N 369 TRP H2 H N N 370 TRP HA H N N 371 TRP HB2 H N N 372 TRP HB3 H N N 373 TRP HD1 H N N 374 TRP HE1 H N N 375 TRP HE3 H N N 376 TRP HZ2 H N N 377 TRP HZ3 H N N 378 TRP HH2 H N N 379 TRP HXT H N N 380 TYR N N N N 381 TYR CA C N S 382 TYR C C N N 383 TYR O O N N 384 TYR CB C N N 385 TYR CG C Y N 386 TYR CD1 C Y N 387 TYR CD2 C Y N 388 TYR CE1 C Y N 389 TYR CE2 C Y N 390 TYR CZ C Y N 391 TYR OH O N N 392 TYR OXT O N N 393 TYR H H N N 394 TYR H2 H N N 395 TYR HA H N N 396 TYR HB2 H N N 397 TYR HB3 H N N 398 TYR HD1 H N N 399 TYR HD2 H N N 400 TYR HE1 H N N 401 TYR HE2 H N N 402 TYR HH H N N 403 TYR HXT H N N 404 VAL N N N N 405 VAL CA C N S 406 VAL C C N N 407 VAL O O N N 408 VAL CB C N N 409 VAL CG1 C N N 410 VAL CG2 C N N 411 VAL OXT O N N 412 VAL H H N N 413 VAL H2 H N N 414 VAL HA H N N 415 VAL HB H N N 416 VAL HG11 H N N 417 VAL HG12 H N N 418 VAL HG13 H N N 419 VAL HG21 H N N 420 VAL HG22 H N N 421 VAL HG23 H N N 422 VAL HXT H N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DT OP3 P sing N N 83 DT OP3 HOP3 sing N N 84 DT P OP1 doub N N 85 DT P OP2 sing N N 86 DT P "O5'" sing N N 87 DT OP2 HOP2 sing N N 88 DT "O5'" "C5'" sing N N 89 DT "C5'" "C4'" sing N N 90 DT "C5'" "H5'" sing N N 91 DT "C5'" "H5''" sing N N 92 DT "C4'" "O4'" sing N N 93 DT "C4'" "C3'" sing N N 94 DT "C4'" "H4'" sing N N 95 DT "O4'" "C1'" sing N N 96 DT "C3'" "O3'" sing N N 97 DT "C3'" "C2'" sing N N 98 DT "C3'" "H3'" sing N N 99 DT "O3'" "HO3'" sing N N 100 DT "C2'" "C1'" sing N N 101 DT "C2'" "H2'" sing N N 102 DT "C2'" "H2''" sing N N 103 DT "C1'" N1 sing N N 104 DT "C1'" "H1'" sing N N 105 DT N1 C2 sing N N 106 DT N1 C6 sing N N 107 DT C2 O2 doub N N 108 DT C2 N3 sing N N 109 DT N3 C4 sing N N 110 DT N3 H3 sing N N 111 DT C4 O4 doub N N 112 DT C4 C5 sing N N 113 DT C5 C7 sing N N 114 DT C5 C6 doub N N 115 DT C7 H71 sing N N 116 DT C7 H72 sing N N 117 DT C7 H73 sing N N 118 DT C6 H6 sing N N 119 GLN N CA sing N N 120 GLN N H sing N N 121 GLN N H2 sing N N 122 GLN CA C sing N N 123 GLN CA CB sing N N 124 GLN CA HA sing N N 125 GLN C O doub N N 126 GLN C OXT sing N N 127 GLN CB CG sing N N 128 GLN CB HB2 sing N N 129 GLN CB HB3 sing N N 130 GLN CG CD sing N N 131 GLN CG HG2 sing N N 132 GLN CG HG3 sing N N 133 GLN CD OE1 doub N N 134 GLN CD NE2 sing N N 135 GLN NE2 HE21 sing N N 136 GLN NE2 HE22 sing N N 137 GLN OXT HXT sing N N 138 GLU N CA sing N N 139 GLU N H sing N N 140 GLU N H2 sing N N 141 GLU CA C sing N N 142 GLU CA CB sing N N 143 GLU CA HA sing N N 144 GLU C O doub N N 145 GLU C OXT sing N N 146 GLU CB CG sing N N 147 GLU CB HB2 sing N N 148 GLU CB HB3 sing N N 149 GLU CG CD sing N N 150 GLU CG HG2 sing N N 151 GLU CG HG3 sing N N 152 GLU CD OE1 doub N N 153 GLU CD OE2 sing N N 154 GLU OE2 HE2 sing N N 155 GLU OXT HXT sing N N 156 GLY N CA sing N N 157 GLY N H sing N N 158 GLY N H2 sing N N 159 GLY CA C sing N N 160 GLY CA HA2 sing N N 161 GLY CA HA3 sing N N 162 GLY C O doub N N 163 GLY C OXT sing N N 164 GLY OXT HXT sing N N 165 HIS N CA sing N N 166 HIS N H sing N N 167 HIS N H2 sing N N 168 HIS CA C sing N N 169 HIS CA CB sing N N 170 HIS CA HA sing N N 171 HIS C O doub N N 172 HIS C OXT sing N N 173 HIS CB CG sing N N 174 HIS CB HB2 sing N N 175 HIS CB HB3 sing N N 176 HIS CG ND1 sing Y N 177 HIS CG CD2 doub Y N 178 HIS ND1 CE1 doub Y N 179 HIS ND1 HD1 sing N N 180 HIS CD2 NE2 sing Y N 181 HIS CD2 HD2 sing N N 182 HIS CE1 NE2 sing Y N 183 HIS CE1 HE1 sing N N 184 HIS NE2 HE2 sing N N 185 HIS OXT HXT sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 THR N CA sing N N 325 THR N H sing N N 326 THR N H2 sing N N 327 THR CA C sing N N 328 THR CA CB sing N N 329 THR CA HA sing N N 330 THR C O doub N N 331 THR C OXT sing N N 332 THR CB OG1 sing N N 333 THR CB CG2 sing N N 334 THR CB HB sing N N 335 THR OG1 HG1 sing N N 336 THR CG2 HG21 sing N N 337 THR CG2 HG22 sing N N 338 THR CG2 HG23 sing N N 339 THR OXT HXT sing N N 340 TRP N CA sing N N 341 TRP N H sing N N 342 TRP N H2 sing N N 343 TRP CA C sing N N 344 TRP CA CB sing N N 345 TRP CA HA sing N N 346 TRP C O doub N N 347 TRP C OXT sing N N 348 TRP CB CG sing N N 349 TRP CB HB2 sing N N 350 TRP CB HB3 sing N N 351 TRP CG CD1 doub Y N 352 TRP CG CD2 sing Y N 353 TRP CD1 NE1 sing Y N 354 TRP CD1 HD1 sing N N 355 TRP CD2 CE2 doub Y N 356 TRP CD2 CE3 sing Y N 357 TRP NE1 CE2 sing Y N 358 TRP NE1 HE1 sing N N 359 TRP CE2 CZ2 sing Y N 360 TRP CE3 CZ3 doub Y N 361 TRP CE3 HE3 sing N N 362 TRP CZ2 CH2 doub Y N 363 TRP CZ2 HZ2 sing N N 364 TRP CZ3 CH2 sing Y N 365 TRP CZ3 HZ3 sing N N 366 TRP CH2 HH2 sing N N 367 TRP OXT HXT sing N N 368 TYR N CA sing N N 369 TYR N H sing N N 370 TYR N H2 sing N N 371 TYR CA C sing N N 372 TYR CA CB sing N N 373 TYR CA HA sing N N 374 TYR C O doub N N 375 TYR C OXT sing N N 376 TYR CB CG sing N N 377 TYR CB HB2 sing N N 378 TYR CB HB3 sing N N 379 TYR CG CD1 doub Y N 380 TYR CG CD2 sing Y N 381 TYR CD1 CE1 sing Y N 382 TYR CD1 HD1 sing N N 383 TYR CD2 CE2 doub Y N 384 TYR CD2 HD2 sing N N 385 TYR CE1 CZ doub Y N 386 TYR CE1 HE1 sing N N 387 TYR CE2 CZ sing Y N 388 TYR CE2 HE2 sing N N 389 TYR CZ OH sing N N 390 TYR OH HH sing N N 391 TYR OXT HXT sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # _atom_sites.entry_id 3VDY _atom_sites.fract_transf_matrix[1][1] 0.009828 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009828 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008434 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_