HEADER DNA BINDING PROTEIN/DNA 07-JAN-12 3VEB TITLE CRYSTAL STRUCTURE OF MATP-MATS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACRODOMAIN TER PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: MATP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*G)-3'; COMPND 8 CHAIN: N; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: MATS STRAND 2; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*AP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*G)-3'; COMPND 13 CHAIN: M; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: MATS STRAND 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: MATP, YPO1433, Y2737, YP_0877; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS MACRODOMAINS, CHROMOSOME, DNA CONDENSATION, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 3 28-FEB-24 3VEB 1 REMARK REVDAT 2 30-JAN-13 3VEB 1 JRNL REVDAT 1 21-NOV-12 3VEB 0 JRNL AUTH P.DUPAIGNE,N.K.TONTHAT,O.ESPELI,T.WHITFILL,F.BOCCARD, JRNL AUTH 2 M.A.SCHUMACHER JRNL TITL MOLECULAR BASIS FOR A PROTEIN-MEDIATED DNA-BRIDGING JRNL TITL 2 MECHANISM THAT FUNCTIONS IN CONDENSATION OF THE E. COLI JRNL TITL 3 CHROMOSOME. JRNL REF MOL.CELL V. 48 560 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 23084832 JRNL DOI 10.1016/J.MOLCEL.2012.09.009 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 795870.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 14660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1831 REMARK 3 BIN R VALUE (WORKING SET) : 0.5280 REMARK 3 BIN FREE R VALUE : 0.5700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.044 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 2.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.57 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.450 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.650 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.480 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.180 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 101.1 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3VEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98037,0.98047,0.91904 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 96.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3000, 0.2 M CALCIUM CHLORIDE, REMARK 280 0.1 M MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.52333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.78500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.26167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 161.30833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 129.04667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 64.52333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.26167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.78500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 161.30833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, N, M, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -102.30000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 177.18880 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -32.26167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 164 REMARK 465 MET A 14 REMARK 465 ASP A 161 REMARK 465 LYS A 162 REMARK 465 GLU A 163 REMARK 465 VAL A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT N 4 C4 DT N 4 O4 0.068 REMARK 500 DT N 10 O3' DT N 10 C3' -0.042 REMARK 500 DT N 10 C4 DT N 10 C5 0.071 REMARK 500 DA M 1 N1 DA M 1 C2 0.055 REMARK 500 DA M 1 C6 DA M 1 N1 0.044 REMARK 500 DC M 2 C2 DC M 2 O2 0.080 REMARK 500 DT M 4 C4 DT M 4 O4 0.095 REMARK 500 DA M 9 C2 DA M 9 N3 0.062 REMARK 500 DC M 13 C2 DC M 13 N3 0.071 REMARK 500 DG M 16 C5 DG M 16 N7 0.041 REMARK 500 DG M 16 C8 DG M 16 N9 0.051 REMARK 500 LYS A 15 C LYS A 15 O 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG M 16 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG M 16 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DG M 16 N9 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 16 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 20 -39.59 -34.96 REMARK 500 GLU B 61 -65.66 -29.30 REMARK 500 HIS B 74 -34.25 -136.76 REMARK 500 ALA B 80 -76.52 -29.70 REMARK 500 ASN B 96 -6.45 -55.32 REMARK 500 PHE B 111 -76.23 -47.91 REMARK 500 LEU B 112 -35.94 -39.51 REMARK 500 ARG B 124 -11.70 -147.18 REMARK 500 LYS B 142 79.67 -109.94 REMARK 500 LYS B 144 58.18 -157.11 REMARK 500 ASP B 161 -74.32 -136.93 REMARK 500 LEU A 19 88.05 -59.92 REMARK 500 ARG A 36 -4.56 -59.46 REMARK 500 HIS A 44 -153.58 -107.23 REMARK 500 ILE A 45 -59.97 -136.76 REMARK 500 SER A 48 -87.51 -56.02 REMARK 500 GLU A 61 -81.81 -37.95 REMARK 500 HIS A 74 -48.23 -143.50 REMARK 500 PHE A 111 -52.66 -27.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG N 3 0.05 SIDE CHAIN REMARK 500 DC N 7 0.08 SIDE CHAIN REMARK 500 DT N 9 0.06 SIDE CHAIN REMARK 500 DG M 5 0.06 SIDE CHAIN REMARK 500 DC M 15 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VEA RELATED DB: PDB REMARK 900 RELATED ID: 4D8J RELATED DB: PDB DBREF 3VEB B 14 164 UNP Q8ZG78 MATP_YERPE 1 151 DBREF 3VEB A 14 164 UNP Q8ZG78 MATP_YERPE 1 151 DBREF 3VEB M 1 16 PDB 3VEB 3VEB 1 16 DBREF 3VEB N 1 16 PDB 3VEB 3VEB 1 16 SEQRES 1 B 151 MET LYS TYR GLN GLN LEU GLU ASN LEU GLU SER GLY TRP SEQRES 2 B 151 LYS TRP ALA TYR LEU VAL LYS LYS HIS ARG GLU GLY GLU SEQRES 3 B 151 ALA ILE THR ARG HIS ILE GLU ASN SER ALA ALA GLN ASP SEQRES 4 B 151 ALA VAL GLU GLN LEU MET LYS LEU GLU ASN GLU PRO VAL SEQRES 5 B 151 LYS VAL GLN GLU TRP ILE ASP ALA HIS MET ASN VAL ASN SEQRES 6 B 151 LEU ALA THR ARG MET LYS GLN THR ILE ARG ALA ARG ARG SEQRES 7 B 151 LYS ARG HIS PHE ASN ALA GLU HIS GLN HIS THR ARG LYS SEQRES 8 B 151 LYS SER ILE ASP LEU GLU PHE LEU VAL TRP GLN ARG LEU SEQRES 9 B 151 ALA VAL LEU ALA ARG ARG ARG GLY ASN THR LEU SER ASP SEQRES 10 B 151 THR VAL VAL GLN LEU ILE GLU ASP ALA GLU ARG LYS GLU SEQRES 11 B 151 LYS TYR ALA SER GLN MET SER SER LEU LYS GLN ASP LEU SEQRES 12 B 151 LYS ASP ILE LEU ASP LYS GLU VAL SEQRES 1 N 16 DT DC DG DT DG DA DC DA DT DT DG DT DC SEQRES 2 N 16 DA DC DG SEQRES 1 M 16 DA DC DG DT DG DA DC DA DA DT DG DT DC SEQRES 2 M 16 DA DC DG SEQRES 1 A 151 MET LYS TYR GLN GLN LEU GLU ASN LEU GLU SER GLY TRP SEQRES 2 A 151 LYS TRP ALA TYR LEU VAL LYS LYS HIS ARG GLU GLY GLU SEQRES 3 A 151 ALA ILE THR ARG HIS ILE GLU ASN SER ALA ALA GLN ASP SEQRES 4 A 151 ALA VAL GLU GLN LEU MET LYS LEU GLU ASN GLU PRO VAL SEQRES 5 A 151 LYS VAL GLN GLU TRP ILE ASP ALA HIS MET ASN VAL ASN SEQRES 6 A 151 LEU ALA THR ARG MET LYS GLN THR ILE ARG ALA ARG ARG SEQRES 7 A 151 LYS ARG HIS PHE ASN ALA GLU HIS GLN HIS THR ARG LYS SEQRES 8 A 151 LYS SER ILE ASP LEU GLU PHE LEU VAL TRP GLN ARG LEU SEQRES 9 A 151 ALA VAL LEU ALA ARG ARG ARG GLY ASN THR LEU SER ASP SEQRES 10 A 151 THR VAL VAL GLN LEU ILE GLU ASP ALA GLU ARG LYS GLU SEQRES 11 A 151 LYS TYR ALA SER GLN MET SER SER LEU LYS GLN ASP LEU SEQRES 12 A 151 LYS ASP ILE LEU ASP LYS GLU VAL HET CA N 101 1 HET CA N 102 1 HET CA M 101 1 HETNAM CA CALCIUM ION FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *7(H2 O) HELIX 1 1 LEU B 19 GLU B 37 1 19 HELIX 2 2 GLU B 46 LYS B 59 1 14 HELIX 3 3 GLU B 63 HIS B 74 1 12 HELIX 4 4 LEU B 79 ASN B 96 1 18 HELIX 5 5 GLU B 110 ARG B 123 1 14 HELIX 6 6 THR B 127 ARG B 141 1 15 HELIX 7 7 ALA B 146 LEU B 160 1 15 HELIX 8 8 LEU A 19 ARG A 36 1 18 HELIX 9 9 GLU A 46 LYS A 59 1 14 HELIX 10 10 PRO A 64 MET A 75 1 12 HELIX 11 11 ASN A 76 ALA A 97 1 22 HELIX 12 12 GLU A 98 ARG A 103 5 6 HELIX 13 13 PHE A 111 GLY A 125 1 15 HELIX 14 14 THR A 127 ILE A 159 1 33 SHEET 1 A 2 LYS B 104 SER B 106 0 SHEET 2 A 2 ASP A 108 GLU A 110 -1 O LEU A 109 N LYS B 105 SITE 1 AC1 2 DG M 16 DG N 3 CRYST1 102.300 102.300 193.570 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009775 0.005644 0.000000 0.00000 SCALE2 0.000000 0.011287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005166 0.00000