data_3VFJ # _entry.id 3VFJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VFJ RCSB RCSB069981 WWPDB D_1000069981 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JW4 'Native MBP structure used for molecular replacement' unspecified PDB 3RUN 'same crystallographic strategy: vancomycin bound to a T4 lysozyme-substrate fusion' unspecified PDB 3RUL 'same crystallographic strategy: dalbavancin bound to the same ubiquitin fusion' unspecified PDB 3RUM 'same crystallographic strategy: ristocetin bound to a MBP-substrate fusion' unspecified PDB 3VFK 'The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier' unspecified # _pdbx_database_status.entry_id 3VFJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Economou, N.J.' 1 'Weeks, S.D.' 2 'Grasty, K.C.' 3 'Loll, P.J.' 4 # _citation.id primary _citation.title 'Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 520 _citation.page_last 533 _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23519660 _citation.pdbx_database_id_DOI 10.1107/S0907444912050469 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Economou, N.J.' 1 ? primary 'Zentner, I.J.' 2 ? primary 'Lazo, E.' 3 ? primary 'Jakoncic, J.' 4 ? primary 'Stojanoff, V.' 5 ? primary 'Weeks, S.D.' 6 ? primary 'Grasty, K.C.' 7 ? primary 'Cocklin, S.' 8 ? primary 'Loll, P.J.' 9 ? # _cell.entry_id 3VFJ _cell.length_a 40.320 _cell.length_b 123.610 _cell.length_c 156.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VFJ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Maltose-binding periplasmic protein, C-terminal fused by Cys-Lys-D-Ala-D-Ala' 41342.777 1 ? ? ? ? 2 polymer nat 'MonodeChloro- Teicoplanin A2-2' 1172.539 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 8 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 5 non-polymer syn 'CACODYLATE ION' 136.989 2 ? ? ? ? 6 non-polymer man 2-amino-2-deoxy-beta-D-glucopyranose 179.171 1 ? ? ? ? 7 non-polymer syn '8-METHYLNONANOIC ACID' 172.265 1 ? ? ? ? 8 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 9 non-polymer man alpha-D-mannopyranose 180.156 1 ? ? ? ? 10 water nat water 18.015 155 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MBP, MMBP, Maltodextrin-binding protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAAAG(CCS)K(DAL)(DAL) ; ;MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAAAGCKAA ; A ? 2 'polypeptide(L)' no yes '(GHP)(3MY)(3FG)(GHP)(GHP)(OMX)(3FG)' GYXGGYX G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ILE n 1 4 GLU n 1 5 GLU n 1 6 GLY n 1 7 LYS n 1 8 LEU n 1 9 VAL n 1 10 ILE n 1 11 TRP n 1 12 ILE n 1 13 ASN n 1 14 GLY n 1 15 ASP n 1 16 LYS n 1 17 GLY n 1 18 TYR n 1 19 ASN n 1 20 GLY n 1 21 LEU n 1 22 ALA n 1 23 GLU n 1 24 VAL n 1 25 GLY n 1 26 LYS n 1 27 LYS n 1 28 PHE n 1 29 GLU n 1 30 LYS n 1 31 ASP n 1 32 THR n 1 33 GLY n 1 34 ILE n 1 35 LYS n 1 36 VAL n 1 37 THR n 1 38 VAL n 1 39 GLU n 1 40 HIS n 1 41 PRO n 1 42 ASP n 1 43 LYS n 1 44 LEU n 1 45 GLU n 1 46 GLU n 1 47 LYS n 1 48 PHE n 1 49 PRO n 1 50 GLN n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 THR n 1 55 GLY n 1 56 ASP n 1 57 GLY n 1 58 PRO n 1 59 ASP n 1 60 ILE n 1 61 ILE n 1 62 PHE n 1 63 TRP n 1 64 ALA n 1 65 HIS n 1 66 ASP n 1 67 ARG n 1 68 PHE n 1 69 GLY n 1 70 GLY n 1 71 TYR n 1 72 ALA n 1 73 GLN n 1 74 SER n 1 75 GLY n 1 76 LEU n 1 77 LEU n 1 78 ALA n 1 79 GLU n 1 80 ILE n 1 81 THR n 1 82 PRO n 1 83 ASP n 1 84 LYS n 1 85 ALA n 1 86 PHE n 1 87 GLN n 1 88 ASP n 1 89 LYS n 1 90 LEU n 1 91 TYR n 1 92 PRO n 1 93 PHE n 1 94 THR n 1 95 TRP n 1 96 ASP n 1 97 ALA n 1 98 VAL n 1 99 ARG n 1 100 TYR n 1 101 ASN n 1 102 GLY n 1 103 LYS n 1 104 LEU n 1 105 ILE n 1 106 ALA n 1 107 TYR n 1 108 PRO n 1 109 ILE n 1 110 ALA n 1 111 VAL n 1 112 GLU n 1 113 ALA n 1 114 LEU n 1 115 SER n 1 116 LEU n 1 117 ILE n 1 118 TYR n 1 119 ASN n 1 120 LYS n 1 121 ASP n 1 122 LEU n 1 123 LEU n 1 124 PRO n 1 125 ASN n 1 126 PRO n 1 127 PRO n 1 128 LYS n 1 129 THR n 1 130 TRP n 1 131 GLU n 1 132 GLU n 1 133 ILE n 1 134 PRO n 1 135 ALA n 1 136 LEU n 1 137 ASP n 1 138 LYS n 1 139 GLU n 1 140 LEU n 1 141 LYS n 1 142 ALA n 1 143 LYS n 1 144 GLY n 1 145 LYS n 1 146 SER n 1 147 ALA n 1 148 LEU n 1 149 MET n 1 150 PHE n 1 151 ASN n 1 152 LEU n 1 153 GLN n 1 154 GLU n 1 155 PRO n 1 156 TYR n 1 157 PHE n 1 158 THR n 1 159 TRP n 1 160 PRO n 1 161 LEU n 1 162 ILE n 1 163 ALA n 1 164 ALA n 1 165 ASP n 1 166 GLY n 1 167 GLY n 1 168 TYR n 1 169 ALA n 1 170 PHE n 1 171 LYS n 1 172 TYR n 1 173 GLU n 1 174 ASN n 1 175 GLY n 1 176 LYS n 1 177 TYR n 1 178 ASP n 1 179 ILE n 1 180 LYS n 1 181 ASP n 1 182 VAL n 1 183 GLY n 1 184 VAL n 1 185 ASP n 1 186 ASN n 1 187 ALA n 1 188 GLY n 1 189 ALA n 1 190 LYS n 1 191 ALA n 1 192 GLY n 1 193 LEU n 1 194 THR n 1 195 PHE n 1 196 LEU n 1 197 VAL n 1 198 ASP n 1 199 LEU n 1 200 ILE n 1 201 LYS n 1 202 ASN n 1 203 LYS n 1 204 HIS n 1 205 MET n 1 206 ASN n 1 207 ALA n 1 208 ASP n 1 209 THR n 1 210 ASP n 1 211 TYR n 1 212 SER n 1 213 ILE n 1 214 ALA n 1 215 GLU n 1 216 ALA n 1 217 ALA n 1 218 PHE n 1 219 ASN n 1 220 LYS n 1 221 GLY n 1 222 GLU n 1 223 THR n 1 224 ALA n 1 225 MET n 1 226 THR n 1 227 ILE n 1 228 ASN n 1 229 GLY n 1 230 PRO n 1 231 TRP n 1 232 ALA n 1 233 TRP n 1 234 SER n 1 235 ASN n 1 236 ILE n 1 237 ASP n 1 238 THR n 1 239 SER n 1 240 LYS n 1 241 VAL n 1 242 ASN n 1 243 TYR n 1 244 GLY n 1 245 VAL n 1 246 THR n 1 247 VAL n 1 248 LEU n 1 249 PRO n 1 250 THR n 1 251 PHE n 1 252 LYS n 1 253 GLY n 1 254 GLN n 1 255 PRO n 1 256 SER n 1 257 LYS n 1 258 PRO n 1 259 PHE n 1 260 VAL n 1 261 GLY n 1 262 VAL n 1 263 LEU n 1 264 SER n 1 265 ALA n 1 266 GLY n 1 267 ILE n 1 268 ASN n 1 269 ALA n 1 270 ALA n 1 271 SER n 1 272 PRO n 1 273 ASN n 1 274 LYS n 1 275 GLU n 1 276 LEU n 1 277 ALA n 1 278 LYS n 1 279 GLU n 1 280 PHE n 1 281 LEU n 1 282 GLU n 1 283 ASN n 1 284 TYR n 1 285 LEU n 1 286 LEU n 1 287 THR n 1 288 ASP n 1 289 GLU n 1 290 GLY n 1 291 LEU n 1 292 GLU n 1 293 ALA n 1 294 VAL n 1 295 ASN n 1 296 LYS n 1 297 ASP n 1 298 LYS n 1 299 PRO n 1 300 LEU n 1 301 GLY n 1 302 ALA n 1 303 VAL n 1 304 ALA n 1 305 LEU n 1 306 LYS n 1 307 SER n 1 308 TYR n 1 309 GLU n 1 310 GLU n 1 311 GLU n 1 312 LEU n 1 313 ALA n 1 314 LYS n 1 315 ASP n 1 316 PRO n 1 317 ARG n 1 318 ILE n 1 319 ALA n 1 320 ALA n 1 321 THR n 1 322 MET n 1 323 GLU n 1 324 ASN n 1 325 ALA n 1 326 GLN n 1 327 LYS n 1 328 GLY n 1 329 GLU n 1 330 ILE n 1 331 MET n 1 332 PRO n 1 333 ASN n 1 334 ILE n 1 335 PRO n 1 336 GLN n 1 337 MET n 1 338 SER n 1 339 ALA n 1 340 PHE n 1 341 TRP n 1 342 TYR n 1 343 ALA n 1 344 VAL n 1 345 ARG n 1 346 THR n 1 347 ALA n 1 348 VAL n 1 349 ILE n 1 350 ASN n 1 351 ALA n 1 352 ALA n 1 353 SER n 1 354 GLY n 1 355 ARG n 1 356 GLN n 1 357 THR n 1 358 VAL n 1 359 ASP n 1 360 GLU n 1 361 ALA n 1 362 LEU n 1 363 LYS n 1 364 ASP n 1 365 ALA n 1 366 GLN n 1 367 THR n 1 368 ASN n 1 369 ALA n 1 370 ALA n 1 371 ALA n 1 372 ALA n 1 373 ALA n 1 374 GLY n 1 375 CCS n 1 376 LYS n 1 377 DAL n 1 378 DAL n 2 1 GHP n 2 2 3MY n 2 3 3FG n 2 4 GHP n 2 5 GHP n 2 6 OMX n 2 7 3FG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'malE, b4034, JW3994' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'four C-terminal amino acids added non-recombinantly with native chemical ligation' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Actinoplanes teichomyceticus' _entity_src_nat.pdbx_ncbi_taxonomy_id 1867 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MALE_ECOLI P0AEX9 1 ;KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT ; 27 ? 2 PDB 3VFJ 3VFJ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VFJ A 2 ? 367 ? P0AEX9 27 ? 392 ? 1 366 2 2 3VFJ G 1 ? 7 ? 3VFJ 1 ? 7 ? 1 7 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VFJ MET A 1 ? UNP P0AEX9 ? ? 'expression tag' 0 1 1 3VFJ ASN A 368 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 367 2 1 3VFJ ALA A 369 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 368 3 1 3VFJ ALA A 370 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 369 4 1 3VFJ ALA A 371 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 370 5 1 3VFJ ALA A 372 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 371 6 1 3VFJ ALA A 373 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 372 7 1 3VFJ GLY A 374 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 373 8 1 3VFJ CCS A 375 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 374 9 1 3VFJ LYS A 376 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 375 10 1 3VFJ DAL A 377 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 376 11 1 3VFJ DAL A 378 ? UNP P0AEX9 ? ? 'SEE REMARK 999' 377 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 3MY 'D-peptide linking' n 3-chloro-D-tyrosine ? 'C9 H10 Cl N O3' 215.634 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CCS 'L-peptide linking' n 'CARBOXYMETHYLATED CYSTEINE' ? 'C5 H9 N O4 S' 179.194 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GCS 'D-saccharide, beta linking' . 2-amino-2-deoxy-beta-D-glucopyranose 2-AMINO-2-DEOXY-D-GLUCOSE 'C6 H13 N O5' 179.171 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 OMX 'L-peptide linking' n '(betaR)-beta-hydroxy-L-Tyrosine' ? 'C9 H11 N O4' 197.188 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 T55 non-polymer . '8-METHYLNONANOIC ACID' ? 'C10 H20 O2' 172.265 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3VFJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M zinc acetate, 0.1 M sodium cacodylate 6.5, 16% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)side bounce monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3VFJ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.89 _reflns.d_resolution_high 2.05 _reflns.number_obs 47482 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3VFJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 47469 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.8900 _refine.ls_d_res_high 2.050 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.1901 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1880 _refine.ls_R_factor_R_free 0.2310 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 2385 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.470 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.6758 _refine.aniso_B[2][2] -4.7390 _refine.aniso_B[3][3] 4.0632 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.392 _refine.solvent_model_param_bsol 41.663 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 22.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2993 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 73 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 3221 _refine_hist.d_res_high 2.050 _refine_hist.d_res_low 39.8900 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 3136 'X-RAY DIFFRACTION' ? f_angle_d 1.045 ? ? 4271 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.954 ? ? 1153 'X-RAY DIFFRACTION' ? f_chiral_restr 0.067 ? ? 461 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 551 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0500 2.1233 4520 0.2567 100.00 0.3095 . . 254 . . . . 'X-RAY DIFFRACTION' . 2.1233 2.2083 4471 0.2247 100.00 0.2746 . . 248 . . . . 'X-RAY DIFFRACTION' . 2.2083 2.3088 4476 0.2132 100.00 0.2542 . . 246 . . . . 'X-RAY DIFFRACTION' . 2.3088 2.4305 4527 0.1968 100.00 0.2625 . . 210 . . . . 'X-RAY DIFFRACTION' . 2.4305 2.5827 4538 0.2021 100.00 0.2287 . . 221 . . . . 'X-RAY DIFFRACTION' . 2.5827 2.7821 4493 0.1984 100.00 0.2802 . . 266 . . . . 'X-RAY DIFFRACTION' . 2.7821 3.0620 4528 0.1915 100.00 0.2560 . . 221 . . . . 'X-RAY DIFFRACTION' . 3.0620 3.5048 4501 0.1743 100.00 0.2085 . . 237 . . . . 'X-RAY DIFFRACTION' . 3.5048 4.4148 4512 0.1622 100.00 0.2055 . . 256 . . . . 'X-RAY DIFFRACTION' . 4.4148 39.9078 4518 0.1831 100.00 0.2008 . . 226 . . . . # _struct.entry_id 3VFJ _struct.title 'The structure of monodechloro-teicoplanin in complex with its ligand, using MBP as a ligand carrier' _struct.pdbx_descriptor 'Maltose-binding periplasmic protein, C-terminal fused by Cys-Lys-D-Ala-D-Ala, teicoplanin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VFJ _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN/ANTIBIOTIC' _struct_keywords.text 'teicoplanin, acetylation of cyteine with iodoacetate modification, SUGAR BINDING PROTEIN-ANTIBIOTIC complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 6 ? O N N 7 ? P N N 8 ? Q N N 9 ? R N N 5 ? S N N 10 ? T N N 10 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? GLY A 33 ? GLY A 16 GLY A 32 1 ? 17 HELX_P HELX_P2 2 LYS A 43 ? ALA A 53 ? LYS A 42 ALA A 52 1 ? 11 HELX_P HELX_P3 3 ARG A 67 ? SER A 74 ? ARG A 66 SER A 73 1 ? 8 HELX_P HELX_P4 4 ASP A 83 ? ASP A 88 ? ASP A 82 ASP A 87 1 ? 6 HELX_P HELX_P5 5 TYR A 91 ? ALA A 97 ? TYR A 90 ALA A 96 1 ? 7 HELX_P HELX_P6 6 GLU A 132 ? ALA A 142 ? GLU A 131 ALA A 141 1 ? 11 HELX_P HELX_P7 7 GLU A 154 ? ASP A 165 ? GLU A 153 ASP A 164 1 ? 12 HELX_P HELX_P8 8 ASN A 186 ? ASN A 202 ? ASN A 185 ASN A 201 1 ? 17 HELX_P HELX_P9 9 ASP A 210 ? LYS A 220 ? ASP A 209 LYS A 219 1 ? 11 HELX_P HELX_P10 10 GLY A 229 ? TRP A 231 ? GLY A 228 TRP A 230 5 ? 3 HELX_P HELX_P11 11 ALA A 232 ? LYS A 240 ? ALA A 231 LYS A 239 1 ? 9 HELX_P HELX_P12 12 ASN A 273 ? TYR A 284 ? ASN A 272 TYR A 283 1 ? 12 HELX_P HELX_P13 13 THR A 287 ? LYS A 298 ? THR A 286 LYS A 297 1 ? 12 HELX_P HELX_P14 14 LEU A 305 ? ALA A 313 ? LEU A 304 ALA A 312 1 ? 9 HELX_P HELX_P15 15 ASP A 315 ? GLY A 328 ? ASP A 314 GLY A 327 1 ? 14 HELX_P HELX_P16 16 GLN A 336 ? SER A 353 ? GLN A 335 SER A 352 1 ? 18 HELX_P HELX_P17 17 THR A 357 ? GLY A 374 ? THR A 356 GLY A 373 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 374 C ? ? ? 1_555 A CCS 375 N ? ? A GLY 373 A CCS 374 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A CCS 375 C ? ? ? 1_555 A LYS 376 N ? ? A CCS 374 A LYS 375 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A LYS 376 C ? ? ? 1_555 A DAL 377 N ? ? A LYS 375 A DAL 376 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A DAL 377 C ? ? ? 1_555 A DAL 378 N ? ? A DAL 376 A DAL 377 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? B GHP 1 C ? ? ? 1_555 B 3MY 2 N ? ? G GHP 1 G 3MY 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale none ? B GHP 1 C5 ? ? ? 1_555 B 3FG 3 OD1 ? ? G GHP 1 G 3FG 3 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale7 covale both ? B 3MY 2 C ? ? ? 1_555 B 3FG 3 N ? ? G 3MY 2 G 3FG 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale none ? B 3MY 2 OBD ? ? ? 1_555 B GHP 4 C3 ? ? G 3MY 2 G GHP 4 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale9 covale both ? B 3FG 3 C ? ? ? 1_555 B GHP 4 N ? ? G 3FG 3 G GHP 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? G GHP 4 G GHP 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale none ? B GHP 4 C5 ? ? ? 1_555 B OMX 6 OH ? ? G GHP 4 G OMX 6 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale12 covale one ? B GHP 4 O4 ? ? ? 1_555 N GCS . C1 ? ? G GHP 4 G GCS 8 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale13 covale both ? B GHP 5 C ? ? ? 1_555 B OMX 6 N ? ? G GHP 5 G OMX 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale14 covale none ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? G GHP 5 G 3FG 7 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale15 covale both ? B OMX 6 C ? ? ? 1_555 B 3FG 7 N ? ? G OMX 6 G 3FG 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale one ? B OMX 6 OC ? ? ? 1_555 P NAG . C1 ? ? G OMX 6 G NAG 10 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale17 covale one ? B 3FG 7 OD1 ? ? ? 1_555 Q MAN . C1 ? ? G 3FG 7 G MAN 11 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale18 covale both ? N GCS . N2 ? ? ? 1_555 O T55 . C ? ? G GCS 8 G T55 9 1_555 ? ? ? ? ? ? ? 1.400 ? ? metalc1 metalc ? ? A HIS 40 ND1 ? ? ? 1_555 I ZN . ZN ? ? A HIS 39 A ZN 407 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc2 metalc ? ? A HIS 40 O ? ? ? 1_555 I ZN . ZN ? ? A HIS 39 A ZN 407 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc3 metalc ? ? A ASP 66 OD2 ? ? ? 1_555 D ZN . ZN ? ? A ASP 65 A ZN 402 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc4 metalc ? ? A ASP 66 OD1 ? ? ? 1_555 D ZN . ZN ? ? A ASP 65 A ZN 402 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc5 metalc ? ? A ASP 83 OD2 ? ? ? 1_555 J ZN . ZN ? ? A ASP 82 A ZN 408 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc6 metalc ? ? A GLU 112 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 111 A ZN 401 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc7 metalc ? ? A GLU 173 OE1 ? ? ? 1_555 G ZN . ZN ? ? A GLU 172 A ZN 405 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc8 metalc ? ? A ASP 178 OD2 ? ? ? 1_555 G ZN . ZN ? ? A ASP 177 A ZN 405 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc9 metalc ? ? A HIS 204 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 203 A ZN 406 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc10 metalc ? ? A GLU 289 OE2 ? ? ? 1_555 E ZN . ZN ? ? A GLU 288 A ZN 403 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc11 metalc ? ? A GLU 289 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 288 A ZN 403 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc12 metalc ? ? A GLU 292 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 291 A ZN 403 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc13 metalc ? ? A GLU 360 OE1 ? ? ? 1_555 F ZN . ZN ? ? A GLU 359 A ZN 404 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc14 metalc ? ? A ASP 364 OD1 ? ? ? 1_555 F ZN . ZN ? ? A ASP 363 A ZN 404 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc15 metalc ? ? A ASP 364 OD2 ? ? ? 1_555 F ZN . ZN ? ? A ASP 363 A ZN 404 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc16 metalc ? ? C ZN . ZN ? ? ? 1_555 L ACT . OXT ? ? A ZN 401 A ACT 410 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc17 metalc ? ? D ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 402 A HOH 547 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc18 metalc ? ? F ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 404 A HOH 621 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc19 metalc ? ? G ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 405 A HOH 614 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc20 metalc ? ? H ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 406 A HOH 533 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc21 metalc ? ? H ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 406 A HOH 615 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc22 metalc ? ? I ZN . ZN ? ? ? 1_555 S HOH . O ? ? A ZN 407 A HOH 594 1_555 ? ? ? ? ? ? ? 2.186 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GHP _struct_mon_prot_cis.label_seq_id 5 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GHP _struct_mon_prot_cis.auth_seq_id 5 _struct_mon_prot_cis.auth_asym_id G _struct_mon_prot_cis.pdbx_label_comp_id_2 OMX _struct_mon_prot_cis.pdbx_label_seq_id_2 6 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 OMX _struct_mon_prot_cis.pdbx_auth_seq_id_2 6 _struct_mon_prot_cis.pdbx_auth_asym_id_2 G _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.88 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? D ? 4 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 35 ? GLU A 39 ? LYS A 34 GLU A 38 A 2 LYS A 7 ? TRP A 11 ? LYS A 6 TRP A 10 A 3 ILE A 60 ? ALA A 64 ? ILE A 59 ALA A 63 A 4 PHE A 259 ? ILE A 267 ? PHE A 258 ILE A 266 A 5 TYR A 107 ? GLU A 112 ? TYR A 106 GLU A 111 A 6 ALA A 302 ? VAL A 303 ? ALA A 301 VAL A 302 B 1 LYS A 35 ? GLU A 39 ? LYS A 34 GLU A 38 B 2 LYS A 7 ? TRP A 11 ? LYS A 6 TRP A 10 B 3 ILE A 60 ? ALA A 64 ? ILE A 59 ALA A 63 B 4 PHE A 259 ? ILE A 267 ? PHE A 258 ILE A 266 B 5 GLU A 329 ? ILE A 330 ? GLU A 328 ILE A 329 C 1 ARG A 99 ? TYR A 100 ? ARG A 98 TYR A 99 C 2 LYS A 103 ? LEU A 104 ? LYS A 102 LEU A 103 D 1 SER A 146 ? LEU A 148 ? SER A 145 LEU A 147 D 2 THR A 223 ? ASN A 228 ? THR A 222 ASN A 227 D 3 SER A 115 ? ASN A 119 ? SER A 114 ASN A 118 D 4 TYR A 243 ? THR A 246 ? TYR A 242 THR A 245 E 1 TYR A 168 ? GLU A 173 ? TYR A 167 GLU A 172 E 2 LYS A 176 ? GLY A 183 ? LYS A 175 GLY A 182 F 1 THR A 250 ? PHE A 251 ? THR A 249 PHE A 250 F 2 GLN A 254 ? PRO A 255 ? GLN A 253 PRO A 254 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 39 ? O GLU A 38 N ILE A 10 ? N ILE A 9 A 2 3 N TRP A 11 ? N TRP A 10 O ILE A 60 ? O ILE A 59 A 3 4 N ILE A 61 ? N ILE A 60 O GLY A 266 ? O GLY A 265 A 4 5 O LEU A 263 ? O LEU A 262 N ILE A 109 ? N ILE A 108 A 5 6 N VAL A 111 ? N VAL A 110 O ALA A 302 ? O ALA A 301 B 1 2 O GLU A 39 ? O GLU A 38 N ILE A 10 ? N ILE A 9 B 2 3 N TRP A 11 ? N TRP A 10 O ILE A 60 ? O ILE A 59 B 3 4 N ILE A 61 ? N ILE A 60 O GLY A 266 ? O GLY A 265 B 4 5 N VAL A 260 ? N VAL A 259 O GLU A 329 ? O GLU A 328 C 1 2 N TYR A 100 ? N TYR A 99 O LYS A 103 ? O LYS A 102 D 1 2 N SER A 146 ? N SER A 145 O ALA A 224 ? O ALA A 223 D 2 3 O ALA A 224 ? O ALA A 223 N ASN A 119 ? N ASN A 118 D 3 4 N LEU A 116 ? N LEU A 115 O THR A 246 ? O THR A 245 E 1 2 N GLU A 173 ? N GLU A 172 O LYS A 176 ? O LYS A 175 F 1 2 N PHE A 251 ? N PHE A 250 O GLN A 254 ? O GLN A 253 # _atom_sites.entry_id 3VFJ _atom_sites.fract_transf_matrix[1][1] 0.024802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008090 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006380 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CL N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 LYS 2 1 1 LYS LYS A . n A 1 3 ILE 3 2 2 ILE ILE A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 GLY 6 5 5 GLY GLY A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 TRP 11 10 10 TRP TRP A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 ASN 19 18 18 ASN ASN A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 PHE 28 27 27 PHE PHE A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 GLN 50 49 49 GLN GLN A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 TRP 63 62 62 TRP TRP A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 HIS 65 64 64 HIS HIS A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 PHE 68 67 67 PHE PHE A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 GLN 73 72 72 GLN GLN A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 PRO 82 81 81 PRO PRO A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 GLN 87 86 86 GLN GLN A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 PHE 93 92 92 PHE PHE A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 TRP 95 94 94 TRP TRP A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 TYR 100 99 99 TYR TYR A . n A 1 101 ASN 101 100 100 ASN ASN A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 TYR 107 106 106 TYR TYR A . n A 1 108 PRO 108 107 107 PRO PRO A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 TYR 118 117 117 TYR TYR A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 ASN 125 124 124 ASN ASN A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 PRO 127 126 126 PRO PRO A . n A 1 128 LYS 128 127 127 LYS LYS A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 TRP 130 129 129 TRP TRP A . n A 1 131 GLU 131 130 130 GLU GLU A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 ASP 137 136 136 ASP ASP A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 MET 149 148 148 MET MET A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ASN 151 150 150 ASN ASN A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 GLN 153 152 152 GLN GLN A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 PRO 155 154 154 PRO PRO A . n A 1 156 TYR 156 155 155 TYR TYR A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 TRP 159 158 158 TRP TRP A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 ILE 162 161 161 ILE ILE A . n A 1 163 ALA 163 162 162 ALA ALA A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 ASP 165 164 164 ASP ASP A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 TYR 168 167 167 TYR TYR A . n A 1 169 ALA 169 168 168 ALA ALA A . n A 1 170 PHE 170 169 169 PHE PHE A . n A 1 171 LYS 171 170 170 LYS LYS A . n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 ASN 174 173 173 ASN ASN A . n A 1 175 GLY 175 174 174 GLY GLY A . n A 1 176 LYS 176 175 175 LYS LYS A . n A 1 177 TYR 177 176 176 TYR TYR A . n A 1 178 ASP 178 177 177 ASP ASP A . n A 1 179 ILE 179 178 178 ILE ILE A . n A 1 180 LYS 180 179 179 LYS LYS A . n A 1 181 ASP 181 180 180 ASP ASP A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 VAL 184 183 183 VAL VAL A . n A 1 185 ASP 185 184 184 ASP ASP A . n A 1 186 ASN 186 185 185 ASN ASN A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 ALA 189 188 188 ALA ALA A . n A 1 190 LYS 190 189 189 LYS LYS A . n A 1 191 ALA 191 190 190 ALA ALA A . n A 1 192 GLY 192 191 191 GLY GLY A . n A 1 193 LEU 193 192 192 LEU LEU A . n A 1 194 THR 194 193 193 THR THR A . n A 1 195 PHE 195 194 194 PHE PHE A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 VAL 197 196 196 VAL VAL A . n A 1 198 ASP 198 197 197 ASP ASP A . n A 1 199 LEU 199 198 198 LEU LEU A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 LYS 201 200 200 LYS LYS A . n A 1 202 ASN 202 201 201 ASN ASN A . n A 1 203 LYS 203 202 202 LYS LYS A . n A 1 204 HIS 204 203 203 HIS HIS A . n A 1 205 MET 205 204 204 MET MET A . n A 1 206 ASN 206 205 205 ASN ASN A . n A 1 207 ALA 207 206 206 ALA ALA A . n A 1 208 ASP 208 207 207 ASP ASP A . n A 1 209 THR 209 208 208 THR THR A . n A 1 210 ASP 210 209 209 ASP ASP A . n A 1 211 TYR 211 210 210 TYR TYR A . n A 1 212 SER 212 211 211 SER SER A . n A 1 213 ILE 213 212 212 ILE ILE A . n A 1 214 ALA 214 213 213 ALA ALA A . n A 1 215 GLU 215 214 214 GLU GLU A . n A 1 216 ALA 216 215 215 ALA ALA A . n A 1 217 ALA 217 216 216 ALA ALA A . n A 1 218 PHE 218 217 217 PHE PHE A . n A 1 219 ASN 219 218 218 ASN ASN A . n A 1 220 LYS 220 219 219 LYS LYS A . n A 1 221 GLY 221 220 220 GLY GLY A . n A 1 222 GLU 222 221 221 GLU GLU A . n A 1 223 THR 223 222 222 THR THR A . n A 1 224 ALA 224 223 223 ALA ALA A . n A 1 225 MET 225 224 224 MET MET A . n A 1 226 THR 226 225 225 THR THR A . n A 1 227 ILE 227 226 226 ILE ILE A . n A 1 228 ASN 228 227 227 ASN ASN A . n A 1 229 GLY 229 228 228 GLY GLY A . n A 1 230 PRO 230 229 229 PRO PRO A . n A 1 231 TRP 231 230 230 TRP TRP A . n A 1 232 ALA 232 231 231 ALA ALA A . n A 1 233 TRP 233 232 232 TRP TRP A . n A 1 234 SER 234 233 233 SER SER A . n A 1 235 ASN 235 234 234 ASN ASN A . n A 1 236 ILE 236 235 235 ILE ILE A . n A 1 237 ASP 237 236 236 ASP ASP A . n A 1 238 THR 238 237 237 THR THR A . n A 1 239 SER 239 238 238 SER SER A . n A 1 240 LYS 240 239 239 LYS LYS A . n A 1 241 VAL 241 240 240 VAL VAL A . n A 1 242 ASN 242 241 241 ASN ASN A . n A 1 243 TYR 243 242 242 TYR TYR A . n A 1 244 GLY 244 243 243 GLY GLY A . n A 1 245 VAL 245 244 244 VAL VAL A . n A 1 246 THR 246 245 245 THR THR A . n A 1 247 VAL 247 246 246 VAL VAL A . n A 1 248 LEU 248 247 247 LEU LEU A . n A 1 249 PRO 249 248 248 PRO PRO A . n A 1 250 THR 250 249 249 THR THR A . n A 1 251 PHE 251 250 250 PHE PHE A . n A 1 252 LYS 252 251 251 LYS LYS A . n A 1 253 GLY 253 252 252 GLY GLY A . n A 1 254 GLN 254 253 253 GLN GLN A . n A 1 255 PRO 255 254 254 PRO PRO A . n A 1 256 SER 256 255 255 SER SER A . n A 1 257 LYS 257 256 256 LYS LYS A . n A 1 258 PRO 258 257 257 PRO PRO A . n A 1 259 PHE 259 258 258 PHE PHE A . n A 1 260 VAL 260 259 259 VAL VAL A . n A 1 261 GLY 261 260 260 GLY GLY A . n A 1 262 VAL 262 261 261 VAL VAL A . n A 1 263 LEU 263 262 262 LEU LEU A . n A 1 264 SER 264 263 263 SER SER A . n A 1 265 ALA 265 264 264 ALA ALA A . n A 1 266 GLY 266 265 265 GLY GLY A . n A 1 267 ILE 267 266 266 ILE ILE A . n A 1 268 ASN 268 267 267 ASN ASN A . n A 1 269 ALA 269 268 268 ALA ALA A . n A 1 270 ALA 270 269 269 ALA ALA A . n A 1 271 SER 271 270 270 SER SER A . n A 1 272 PRO 272 271 271 PRO PRO A . n A 1 273 ASN 273 272 272 ASN ASN A . n A 1 274 LYS 274 273 273 LYS LYS A . n A 1 275 GLU 275 274 274 GLU GLU A . n A 1 276 LEU 276 275 275 LEU LEU A . n A 1 277 ALA 277 276 276 ALA ALA A . n A 1 278 LYS 278 277 277 LYS LYS A . n A 1 279 GLU 279 278 278 GLU GLU A . n A 1 280 PHE 280 279 279 PHE PHE A . n A 1 281 LEU 281 280 280 LEU LEU A . n A 1 282 GLU 282 281 281 GLU GLU A . n A 1 283 ASN 283 282 282 ASN ASN A . n A 1 284 TYR 284 283 283 TYR TYR A . n A 1 285 LEU 285 284 284 LEU LEU A . n A 1 286 LEU 286 285 285 LEU LEU A . n A 1 287 THR 287 286 286 THR THR A . n A 1 288 ASP 288 287 287 ASP ASP A . n A 1 289 GLU 289 288 288 GLU GLU A . n A 1 290 GLY 290 289 289 GLY GLY A . n A 1 291 LEU 291 290 290 LEU LEU A . n A 1 292 GLU 292 291 291 GLU GLU A . n A 1 293 ALA 293 292 292 ALA ALA A . n A 1 294 VAL 294 293 293 VAL VAL A . n A 1 295 ASN 295 294 294 ASN ASN A . n A 1 296 LYS 296 295 295 LYS LYS A . n A 1 297 ASP 297 296 296 ASP ASP A . n A 1 298 LYS 298 297 297 LYS LYS A . n A 1 299 PRO 299 298 298 PRO PRO A . n A 1 300 LEU 300 299 299 LEU LEU A . n A 1 301 GLY 301 300 300 GLY GLY A . n A 1 302 ALA 302 301 301 ALA ALA A . n A 1 303 VAL 303 302 302 VAL VAL A . n A 1 304 ALA 304 303 303 ALA ALA A . n A 1 305 LEU 305 304 304 LEU LEU A . n A 1 306 LYS 306 305 305 LYS LYS A . n A 1 307 SER 307 306 306 SER SER A . n A 1 308 TYR 308 307 307 TYR TYR A . n A 1 309 GLU 309 308 308 GLU GLU A . n A 1 310 GLU 310 309 309 GLU GLU A . n A 1 311 GLU 311 310 310 GLU GLU A . n A 1 312 LEU 312 311 311 LEU LEU A . n A 1 313 ALA 313 312 312 ALA ALA A . n A 1 314 LYS 314 313 313 LYS LYS A . n A 1 315 ASP 315 314 314 ASP ASP A . n A 1 316 PRO 316 315 315 PRO PRO A . n A 1 317 ARG 317 316 316 ARG ARG A . n A 1 318 ILE 318 317 317 ILE ILE A . n A 1 319 ALA 319 318 318 ALA ALA A . n A 1 320 ALA 320 319 319 ALA ALA A . n A 1 321 THR 321 320 320 THR THR A . n A 1 322 MET 322 321 321 MET MET A . n A 1 323 GLU 323 322 322 GLU GLU A . n A 1 324 ASN 324 323 323 ASN ASN A . n A 1 325 ALA 325 324 324 ALA ALA A . n A 1 326 GLN 326 325 325 GLN GLN A . n A 1 327 LYS 327 326 326 LYS LYS A . n A 1 328 GLY 328 327 327 GLY GLY A . n A 1 329 GLU 329 328 328 GLU GLU A . n A 1 330 ILE 330 329 329 ILE ILE A . n A 1 331 MET 331 330 330 MET MET A . n A 1 332 PRO 332 331 331 PRO PRO A . n A 1 333 ASN 333 332 332 ASN ASN A . n A 1 334 ILE 334 333 333 ILE ILE A . n A 1 335 PRO 335 334 334 PRO PRO A . n A 1 336 GLN 336 335 335 GLN GLN A . n A 1 337 MET 337 336 336 MET MET A . n A 1 338 SER 338 337 337 SER SER A . n A 1 339 ALA 339 338 338 ALA ALA A . n A 1 340 PHE 340 339 339 PHE PHE A . n A 1 341 TRP 341 340 340 TRP TRP A . n A 1 342 TYR 342 341 341 TYR TYR A . n A 1 343 ALA 343 342 342 ALA ALA A . n A 1 344 VAL 344 343 343 VAL VAL A . n A 1 345 ARG 345 344 344 ARG ARG A . n A 1 346 THR 346 345 345 THR THR A . n A 1 347 ALA 347 346 346 ALA ALA A . n A 1 348 VAL 348 347 347 VAL VAL A . n A 1 349 ILE 349 348 348 ILE ILE A . n A 1 350 ASN 350 349 349 ASN ASN A . n A 1 351 ALA 351 350 350 ALA ALA A . n A 1 352 ALA 352 351 351 ALA ALA A . n A 1 353 SER 353 352 352 SER SER A . n A 1 354 GLY 354 353 353 GLY GLY A . n A 1 355 ARG 355 354 354 ARG ARG A . n A 1 356 GLN 356 355 355 GLN GLN A . n A 1 357 THR 357 356 356 THR THR A . n A 1 358 VAL 358 357 357 VAL VAL A . n A 1 359 ASP 359 358 358 ASP ASP A . n A 1 360 GLU 360 359 359 GLU GLU A . n A 1 361 ALA 361 360 360 ALA ALA A . n A 1 362 LEU 362 361 361 LEU LEU A . n A 1 363 LYS 363 362 362 LYS LYS A . n A 1 364 ASP 364 363 363 ASP ASP A . n A 1 365 ALA 365 364 364 ALA ALA A . n A 1 366 GLN 366 365 365 GLN GLN A . n A 1 367 THR 367 366 366 THR THR A . n A 1 368 ASN 368 367 367 ASN ASN A . n A 1 369 ALA 369 368 368 ALA ALA A . n A 1 370 ALA 370 369 369 ALA ALA A . n A 1 371 ALA 371 370 370 ALA ALA A . n A 1 372 ALA 372 371 371 ALA ALA A . n A 1 373 ALA 373 372 372 ALA ALA A . n A 1 374 GLY 374 373 373 GLY GLY A . n A 1 375 CCS 375 374 374 CCS CCS A . n A 1 376 LYS 376 375 375 LYS LYS A . n A 1 377 DAL 377 376 376 DAL DAL A . n A 1 378 DAL 378 377 377 DAL DAL A . n B 2 1 GHP 1 1 1 GHP GHP G . n B 2 2 3MY 2 2 2 3MY 3MY G . n B 2 3 3FG 3 3 3 3FG 3FG G . n B 2 4 GHP 4 4 4 GHP GHP G . n B 2 5 GHP 5 5 5 GHP GHP G . n B 2 6 OMX 6 6 6 OMX OMX G . n B 2 7 3FG 7 7 7 3FG 3FG G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 401 1 ZN ZN A . D 3 ZN 1 402 2 ZN ZN A . E 3 ZN 1 403 3 ZN ZN A . F 3 ZN 1 404 4 ZN ZN A . G 3 ZN 1 405 5 ZN ZN A . H 3 ZN 1 406 6 ZN ZN A . I 3 ZN 1 407 7 ZN ZN A . J 3 ZN 1 408 8 ZN ZN A . K 4 ACT 1 409 1 ACT ACT A . L 4 ACT 1 410 2 ACT ACT A . M 5 CAC 1 411 1 CAC CAC A . N 6 GCS 1 8 8 GCS GCS G . O 7 T55 1 9 9 T55 T55 G . P 8 NAG 1 10 10 NAG NAG G . Q 9 MAN 1 11 11 MAN MAN G . R 5 CAC 1 104 2 CAC CAC G . S 10 HOH 1 501 1 HOH HOH A . S 10 HOH 2 502 2 HOH HOH A . S 10 HOH 3 503 3 HOH HOH A . S 10 HOH 4 504 4 HOH HOH A . S 10 HOH 5 505 5 HOH HOH A . S 10 HOH 6 506 6 HOH HOH A . S 10 HOH 7 507 7 HOH HOH A . S 10 HOH 8 508 8 HOH HOH A . S 10 HOH 9 509 9 HOH HOH A . S 10 HOH 10 510 10 HOH HOH A . S 10 HOH 11 511 11 HOH HOH A . S 10 HOH 12 512 12 HOH HOH A . S 10 HOH 13 513 13 HOH HOH A . S 10 HOH 14 514 14 HOH HOH A . S 10 HOH 15 515 15 HOH HOH A . S 10 HOH 16 516 16 HOH HOH A . S 10 HOH 17 517 17 HOH HOH A . S 10 HOH 18 518 18 HOH HOH A . S 10 HOH 19 519 19 HOH HOH A . S 10 HOH 20 520 20 HOH HOH A . S 10 HOH 21 521 21 HOH HOH A . S 10 HOH 22 522 22 HOH HOH A . S 10 HOH 23 523 23 HOH HOH A . S 10 HOH 24 524 24 HOH HOH A . S 10 HOH 25 525 25 HOH HOH A . S 10 HOH 26 526 26 HOH HOH A . S 10 HOH 27 527 27 HOH HOH A . S 10 HOH 28 528 28 HOH HOH A . S 10 HOH 29 529 29 HOH HOH A . S 10 HOH 30 530 30 HOH HOH A . S 10 HOH 31 531 31 HOH HOH A . S 10 HOH 32 532 32 HOH HOH A . S 10 HOH 33 533 33 HOH HOH A . S 10 HOH 34 534 34 HOH HOH A . S 10 HOH 35 535 35 HOH HOH A . S 10 HOH 36 536 36 HOH HOH A . S 10 HOH 37 537 37 HOH HOH A . S 10 HOH 38 538 38 HOH HOH A . S 10 HOH 39 539 39 HOH HOH A . S 10 HOH 40 540 40 HOH HOH A . S 10 HOH 41 541 41 HOH HOH A . S 10 HOH 42 542 42 HOH HOH A . S 10 HOH 43 543 43 HOH HOH A . S 10 HOH 44 544 44 HOH HOH A . S 10 HOH 45 545 45 HOH HOH A . S 10 HOH 46 546 46 HOH HOH A . S 10 HOH 47 547 47 HOH HOH A . S 10 HOH 48 548 48 HOH HOH A . S 10 HOH 49 549 49 HOH HOH A . S 10 HOH 50 550 50 HOH HOH A . S 10 HOH 51 551 51 HOH HOH A . S 10 HOH 52 552 52 HOH HOH A . S 10 HOH 53 553 53 HOH HOH A . S 10 HOH 54 554 54 HOH HOH A . S 10 HOH 55 555 55 HOH HOH A . S 10 HOH 56 556 56 HOH HOH A . S 10 HOH 57 557 57 HOH HOH A . S 10 HOH 58 558 58 HOH HOH A . S 10 HOH 59 559 59 HOH HOH A . S 10 HOH 60 560 60 HOH HOH A . S 10 HOH 61 561 61 HOH HOH A . S 10 HOH 62 562 62 HOH HOH A . S 10 HOH 63 563 64 HOH HOH A . S 10 HOH 64 564 65 HOH HOH A . S 10 HOH 65 565 66 HOH HOH A . S 10 HOH 66 566 67 HOH HOH A . S 10 HOH 67 567 68 HOH HOH A . S 10 HOH 68 568 69 HOH HOH A . S 10 HOH 69 569 71 HOH HOH A . S 10 HOH 70 570 72 HOH HOH A . S 10 HOH 71 571 73 HOH HOH A . S 10 HOH 72 572 74 HOH HOH A . S 10 HOH 73 573 76 HOH HOH A . S 10 HOH 74 574 78 HOH HOH A . S 10 HOH 75 575 79 HOH HOH A . S 10 HOH 76 576 80 HOH HOH A . S 10 HOH 77 577 81 HOH HOH A . S 10 HOH 78 578 82 HOH HOH A . S 10 HOH 79 579 83 HOH HOH A . S 10 HOH 80 580 84 HOH HOH A . S 10 HOH 81 581 85 HOH HOH A . S 10 HOH 82 582 86 HOH HOH A . S 10 HOH 83 583 87 HOH HOH A . S 10 HOH 84 584 88 HOH HOH A . S 10 HOH 85 585 89 HOH HOH A . S 10 HOH 86 586 90 HOH HOH A . S 10 HOH 87 587 91 HOH HOH A . S 10 HOH 88 588 92 HOH HOH A . S 10 HOH 89 589 93 HOH HOH A . S 10 HOH 90 590 94 HOH HOH A . S 10 HOH 91 591 95 HOH HOH A . S 10 HOH 92 592 96 HOH HOH A . S 10 HOH 93 593 97 HOH HOH A . S 10 HOH 94 594 98 HOH HOH A . S 10 HOH 95 595 99 HOH HOH A . S 10 HOH 96 596 100 HOH HOH A . S 10 HOH 97 597 101 HOH HOH A . S 10 HOH 98 598 102 HOH HOH A . S 10 HOH 99 599 103 HOH HOH A . S 10 HOH 100 600 104 HOH HOH A . S 10 HOH 101 601 105 HOH HOH A . S 10 HOH 102 602 106 HOH HOH A . S 10 HOH 103 603 107 HOH HOH A . S 10 HOH 104 604 108 HOH HOH A . S 10 HOH 105 605 109 HOH HOH A . S 10 HOH 106 606 110 HOH HOH A . S 10 HOH 107 607 111 HOH HOH A . S 10 HOH 108 608 112 HOH HOH A . S 10 HOH 109 609 113 HOH HOH A . S 10 HOH 110 610 114 HOH HOH A . S 10 HOH 111 611 115 HOH HOH A . S 10 HOH 112 612 116 HOH HOH A . S 10 HOH 113 613 117 HOH HOH A . S 10 HOH 114 614 118 HOH HOH A . S 10 HOH 115 615 119 HOH HOH A . S 10 HOH 116 616 120 HOH HOH A . S 10 HOH 117 617 121 HOH HOH A . S 10 HOH 118 618 122 HOH HOH A . S 10 HOH 119 619 123 HOH HOH A . S 10 HOH 120 620 124 HOH HOH A . S 10 HOH 121 621 125 HOH HOH A . S 10 HOH 122 622 126 HOH HOH A . S 10 HOH 123 623 127 HOH HOH A . S 10 HOH 124 624 128 HOH HOH A . S 10 HOH 125 625 129 HOH HOH A . S 10 HOH 126 626 130 HOH HOH A . S 10 HOH 127 627 131 HOH HOH A . S 10 HOH 128 628 132 HOH HOH A . S 10 HOH 129 629 133 HOH HOH A . S 10 HOH 130 630 134 HOH HOH A . S 10 HOH 131 631 135 HOH HOH A . S 10 HOH 132 632 136 HOH HOH A . S 10 HOH 133 633 137 HOH HOH A . S 10 HOH 134 634 138 HOH HOH A . S 10 HOH 135 635 139 HOH HOH A . S 10 HOH 136 636 140 HOH HOH A . S 10 HOH 137 637 141 HOH HOH A . S 10 HOH 138 638 142 HOH HOH A . S 10 HOH 139 639 143 HOH HOH A . S 10 HOH 140 640 144 HOH HOH A . S 10 HOH 141 641 145 HOH HOH A . S 10 HOH 142 642 146 HOH HOH A . S 10 HOH 143 643 147 HOH HOH A . S 10 HOH 144 644 148 HOH HOH A . S 10 HOH 145 645 149 HOH HOH A . S 10 HOH 146 646 151 HOH HOH A . S 10 HOH 147 647 152 HOH HOH A . S 10 HOH 148 648 153 HOH HOH A . S 10 HOH 149 649 154 HOH HOH A . S 10 HOH 150 650 155 HOH HOH A . T 10 HOH 1 201 63 HOH HOH G . T 10 HOH 2 202 70 HOH HOH G . T 10 HOH 3 203 75 HOH HOH G . T 10 HOH 4 204 77 HOH HOH G . T 10 HOH 5 205 150 HOH HOH G . # _pdbx_molecule_features.prd_id PRD_000882 _pdbx_molecule_features.name 'MonodeChloro- Teicoplanin A2-2' _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000882 B 1 PRD_000882 N 1 PRD_000882 O 1 PRD_000882 P 1 PRD_000882 Q # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2930 ? 1 MORE -154 ? 1 'SSA (A^2)' 16900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 403 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 40 ? A HIS 39 ? 1_555 ZN ? I ZN . ? A ZN 407 ? 1_555 O ? A HIS 40 ? A HIS 39 ? 1_555 84.5 ? 2 ND1 ? A HIS 40 ? A HIS 39 ? 1_555 ZN ? I ZN . ? A ZN 407 ? 1_555 O ? S HOH . ? A HOH 594 ? 1_555 100.4 ? 3 O ? A HIS 40 ? A HIS 39 ? 1_555 ZN ? I ZN . ? A ZN 407 ? 1_555 O ? S HOH . ? A HOH 594 ? 1_555 82.9 ? 4 OD2 ? A ASP 66 ? A ASP 65 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 52.9 ? 5 OD2 ? A ASP 66 ? A ASP 65 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 O ? S HOH . ? A HOH 547 ? 1_555 87.3 ? 6 OD1 ? A ASP 66 ? A ASP 65 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 O ? S HOH . ? A HOH 547 ? 1_555 137.3 ? 7 OE2 ? A GLU 112 ? A GLU 111 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 OXT ? L ACT . ? A ACT 410 ? 1_555 119.6 ? 8 OE1 ? A GLU 173 ? A GLU 172 ? 1_555 ZN ? G ZN . ? A ZN 405 ? 1_555 OD2 ? A ASP 178 ? A ASP 177 ? 1_555 124.4 ? 9 OE1 ? A GLU 173 ? A GLU 172 ? 1_555 ZN ? G ZN . ? A ZN 405 ? 1_555 O ? S HOH . ? A HOH 614 ? 1_555 107.3 ? 10 OD2 ? A ASP 178 ? A ASP 177 ? 1_555 ZN ? G ZN . ? A ZN 405 ? 1_555 O ? S HOH . ? A HOH 614 ? 1_555 92.9 ? 11 NE2 ? A HIS 204 ? A HIS 203 ? 1_555 ZN ? H ZN . ? A ZN 406 ? 1_555 O ? S HOH . ? A HOH 533 ? 1_555 92.7 ? 12 NE2 ? A HIS 204 ? A HIS 203 ? 1_555 ZN ? H ZN . ? A ZN 406 ? 1_555 O ? S HOH . ? A HOH 615 ? 1_555 125.9 ? 13 O ? S HOH . ? A HOH 533 ? 1_555 ZN ? H ZN . ? A ZN 406 ? 1_555 O ? S HOH . ? A HOH 615 ? 1_555 98.6 ? 14 OE2 ? A GLU 289 ? A GLU 288 ? 1_555 ZN ? E ZN . ? A ZN 403 ? 1_555 OE1 ? A GLU 289 ? A GLU 288 ? 1_555 53.2 ? 15 OE2 ? A GLU 289 ? A GLU 288 ? 1_555 ZN ? E ZN . ? A ZN 403 ? 1_555 OE1 ? A GLU 292 ? A GLU 291 ? 1_555 99.8 ? 16 OE1 ? A GLU 289 ? A GLU 288 ? 1_555 ZN ? E ZN . ? A ZN 403 ? 1_555 OE1 ? A GLU 292 ? A GLU 291 ? 1_555 81.1 ? 17 OE1 ? A GLU 360 ? A GLU 359 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 OD1 ? A ASP 364 ? A ASP 363 ? 1_555 103.4 ? 18 OE1 ? A GLU 360 ? A GLU 359 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 OD2 ? A ASP 364 ? A ASP 363 ? 1_555 128.8 ? 19 OD1 ? A ASP 364 ? A ASP 363 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 OD2 ? A ASP 364 ? A ASP 363 ? 1_555 49.7 ? 20 OE1 ? A GLU 360 ? A GLU 359 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 O ? S HOH . ? A HOH 621 ? 1_555 143.2 ? 21 OD1 ? A ASP 364 ? A ASP 363 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 O ? S HOH . ? A HOH 621 ? 1_555 104.4 ? 22 OD2 ? A ASP 364 ? A ASP 363 ? 1_555 ZN ? F ZN . ? A ZN 404 ? 1_555 O ? S HOH . ? A HOH 621 ? 1_555 59.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-09 2 'Structure model' 1 1 2013-03-06 3 'Structure model' 1 2 2013-03-13 4 'Structure model' 1 3 2013-03-27 5 'Structure model' 1 4 2013-04-03 6 'Structure model' 1 5 2013-06-19 7 'Structure model' 1 6 2014-12-10 8 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 8 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Derived calculations' 5 6 'Structure model' 'Database references' 6 7 'Structure model' 'Structure summary' 7 8 'Structure model' 'Data collection' 8 8 'Structure model' 'Database references' 9 8 'Structure model' 'Derived calculations' 10 8 'Structure model' 'Polymer sequence' 11 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' chem_comp 2 8 'Structure model' entity 3 8 'Structure model' entity_poly 4 8 'Structure model' pdbx_chem_comp_identifier 5 8 'Structure model' pdbx_entity_nonpoly 6 8 'Structure model' pdbx_struct_conn_angle 7 8 'Structure model' struct_conn 8 8 'Structure model' struct_ref_seq_dif 9 8 'Structure model' struct_site 10 8 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_chem_comp.name' 2 8 'Structure model' '_chem_comp.type' 3 8 'Structure model' '_entity.pdbx_description' 4 8 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 5 8 'Structure model' '_pdbx_entity_nonpoly.name' 6 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 8 'Structure model' '_pdbx_struct_conn_angle.value' 21 8 'Structure model' '_struct_conn.conn_type_id' 22 8 'Structure model' '_struct_conn.id' 23 8 'Structure model' '_struct_conn.pdbx_dist_value' 24 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 8 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 PHENIX 1.6.2_432 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 3VFJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'C-TERMINAL FUSED BY LINKER AND MODIFIED CYS-LYS-D-ALA-D-ALA' _pdbx_entry_details.compound_details ;AUTHORS STATED THE FOLLOWING: THE STARTING MATERIAL HAD TEICOPLANIN A2-2 THAT CONTAINED TWO CHLORINE ATOMS. THE ACTUAL CRYSTALS CONTAINED BOTH CHLORINE ATOMS BEFORE THEY WERE EXPOSED TO X-RAYS. ONE CHLORINE WAS REMOVED FROM TEICOPLANIN BY X-IRRADIATION DAMAGE EARLY IN THE DIFFRACTION EXPERIMENT TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE. HERE, TEICOPLANIN A2-2 WAS UNDER RADIATION DAMAGE, WHICH CAUSES THE LOSS OF ONE CHLORINE ATOM. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 55 ? ? -115.26 -169.09 2 1 ILE A 108 ? ? -121.11 -54.66 3 1 LEU A 122 ? ? -154.21 76.77 4 1 ASP A 209 ? ? -119.08 -167.98 5 1 3FG G 3 ? ? -137.18 -31.16 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCS 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNb GCS 'COMMON NAME' GMML 1.0 b-D-glucopyranosamine GCS 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpN GCS 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcN MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'ACETATE ION' ACT 5 'CACODYLATE ION' CAC 6 2-amino-2-deoxy-beta-D-glucopyranose GCS 7 '8-METHYLNONANOIC ACID' T55 8 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 9 alpha-D-mannopyranose MAN 10 water HOH #