HEADER IMMUNE SYSTEM 10-JAN-12 3VG0 TITLE ANTIBODY FAB FRAGMENT CAVEAT 3VG0 FUC A 3 HAS WRONG CHIRALITY AT ATOM C1 FUC A 3 HAS WRONG CAVEAT 2 3VG0 CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTIBODY 9F8 FAB FRAGMENT L CHAIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MONOCLONAL ANTIBODY 9F8 FAB FRAGMENT H CHAIN; COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 OTHER_DETAILS: HYBRIDOMA CELL LINE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 STRAIN: BALB/C; SOURCE 10 OTHER_DETAILS: HYBRIDOMA CELL LINE KEYWDS ANTIBODY FAB FRAGMENT, IMMUNOGLOBULIN FOLD, N-LINKED GLYCOSYLATION KEYWDS 2 SITE, FAB FRAGMENT, LBD DOMAIN OF OBR RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.CARPENTER,G.R.HEMSWORTH,R.J.ROSS,P.J.ARTYMIUK REVDAT 4 13-SEP-23 3VG0 1 HETSYN REVDAT 3 29-JUL-20 3VG0 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 25-APR-12 3VG0 1 JRNL REVDAT 1 14-MAR-12 3VG0 0 JRNL AUTH B.CARPENTER,G.R.HEMSWORTH,Z.WU,M.MAAMRA,C.J.STRASBURGER, JRNL AUTH 2 R.J.ROSS,P.J.ARTYMIUK JRNL TITL STRUCTURE OF THE HUMAN OBESITY RECEPTOR LEPTIN-BINDING JRNL TITL 2 DOMAIN REVEALS THE MECHANISM OF LEPTIN ANTAGONISM BY A JRNL TITL 3 MONOCLONAL ANTIBODY. JRNL REF STRUCTURE V. 20 487 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22405007 JRNL DOI 10.1016/J.STR.2012.01.019 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 20419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.336 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3357 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4598 ; 1.897 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 8.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;38.200 ;24.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;15.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2514 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2156 ; 9.971 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3486 ;10.357 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ;12.991 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1112 ;13.027 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 3 H 117 REMARK 3 ORIGIN FOR THE GROUP (A): 64.5640 1.3620 32.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1566 REMARK 3 T33: 0.2286 T12: -0.0307 REMARK 3 T13: -0.0521 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.9617 L22: 1.5888 REMARK 3 L33: 1.4852 L12: -0.1508 REMARK 3 L13: 1.0904 L23: 0.3167 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.1620 S13: -0.0302 REMARK 3 S21: 0.0790 S22: 0.1723 S23: -0.0495 REMARK 3 S31: -0.0039 S32: 0.0702 S33: -0.1186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 118 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7180 8.5110 28.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.1031 REMARK 3 T33: 0.1551 T12: -0.0215 REMARK 3 T13: -0.0301 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.6921 L22: 1.3186 REMARK 3 L33: 0.9348 L12: 0.6380 REMARK 3 L13: 1.0618 L23: 0.4356 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0682 S13: 0.0343 REMARK 3 S21: 0.0882 S22: -0.0314 S23: 0.0575 REMARK 3 S31: 0.0014 S32: 0.0191 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 3 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7570 -4.4900 12.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.3657 REMARK 3 T33: 0.0687 T12: 0.0135 REMARK 3 T13: -0.0080 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 3.5352 L22: 0.1943 REMARK 3 L33: 6.7744 L12: 0.9164 REMARK 3 L13: 4.5674 L23: 1.2823 REMARK 3 S TENSOR REMARK 3 S11: 0.1378 S12: 0.6009 S13: -0.3294 REMARK 3 S21: -0.0481 S22: 0.2564 S23: -0.0713 REMARK 3 S31: -0.2777 S32: 0.6069 S33: -0.3941 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 215 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3630 16.3530 14.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.1292 REMARK 3 T33: 0.1429 T12: -0.0116 REMARK 3 T13: -0.0022 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.2409 L22: 1.9247 REMARK 3 L33: 1.2085 L12: -1.2346 REMARK 3 L13: -0.4156 L23: 1.2446 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: 0.2364 S13: 0.1464 REMARK 3 S21: 0.0056 S22: -0.0383 S23: -0.0486 REMARK 3 S31: -0.0796 S32: 0.1207 S33: 0.0650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3VG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54182 REMARK 200 MONOCHROMATOR : VARIMAX CONFOCAL OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR345 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 37.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1CIX, CHAINS A AND D FOR CHAINS L AND H REMARK 200 REPECTIVELY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE PH4.6, 25% PEG-4000, VAPOR DIFFUSION, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.60950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.98300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.60950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.98300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA L 2 REMARK 465 CYS L 216 REMARK 465 ALA H 1 REMARK 465 GLN H 2 REMARK 465 THR H 222 REMARK 465 SER H 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 11 CG CD CE NZ REMARK 470 LYS L 26 CG CD CE NZ REMARK 470 THR L 28 OG1 CG2 REMARK 470 GLN L 29 CG CD OE1 NE2 REMARK 470 ASN L 30 CG OD1 ND2 REMARK 470 ARG L 32 CG CD NE CZ NH1 NH2 REMARK 470 LEU L 52 CG CD1 CD2 REMARK 470 SER L 54 OG REMARK 470 ASN L 95 CG OD1 ND2 REMARK 470 LYS L 105 CG CD CE NZ REMARK 470 LYS L 144 CG CD CE NZ REMARK 470 GLN L 158 CG CD OE1 NE2 REMARK 470 LYS L 171 CG CD CE NZ REMARK 470 ASN L 192 CG OD1 ND2 REMARK 470 ASN L 214 CG OD1 ND2 REMARK 470 GLU L 215 CG CD OE1 OE2 REMARK 470 LYS H 5 CG CD CE NZ REMARK 470 GLN H 111 CG CD OE1 NE2 REMARK 470 LYS H 121 CG CD CE NZ REMARK 470 GLN H 137 CG CD OE1 NE2 REMARK 470 ASN H 139 CG OD1 ND2 REMARK 470 GLN H 177 CG CD OE1 NE2 REMARK 470 SER H 178 OG REMARK 470 ASP H 220 CG OD1 OD2 REMARK 470 CYS H 221 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 196 CB CYS L 196 SG -0.143 REMARK 500 GLU H 3 CD GLU H 3 OE2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 30 136.48 122.26 REMARK 500 VAL L 31 43.51 -96.47 REMARK 500 ALA L 53 -45.38 67.34 REMARK 500 SER L 54 28.05 -141.43 REMARK 500 LYS L 171 -62.16 -99.66 REMARK 500 SER H 17 -13.24 75.68 REMARK 500 LYS H 66 -38.30 -33.29 REMARK 500 GLU H 104 -120.82 -114.47 REMARK 500 SER H 134 107.54 -26.61 REMARK 500 ALA H 135 58.80 6.77 REMARK 500 ALA H 136 67.72 -59.98 REMARK 500 GLN H 137 162.81 61.48 REMARK 500 ASN H 161 54.32 36.26 REMARK 500 ASP H 179 17.52 57.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR H 138 ASN H 139 143.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V6O RELATED DB: PDB REMARK 900 ANTIBODY COMPLEX WITH RECEPTOR DBREF 3VG0 L 2 216 PDB 3VG0 3VG0 2 216 DBREF 3VG0 H 2 223 PDB 3VG0 3VG0 2 223 SEQRES 1 L 215 ALA GLU ILE VAL MET THR GLN SER PRO LYS PHE MET SER SEQRES 2 L 215 THR SER ILE GLY ASP ARG VAL ASN ILE THR CYS LYS ALA SEQRES 3 L 215 THR GLN ASN VAL ARG THR ALA VAL THR TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN SER PRO GLN ALA LEU ILE PHE LEU ALA SEQRES 5 L 215 SER ASN ARG HIS THR GLY VAL PRO ALA ARG PHE THR GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE ASN ASN SEQRES 7 L 215 VAL LYS SER GLU ASP LEU ALA ASP TYR PHE CYS LEU GLN SEQRES 8 L 215 HIS TRP ASN TYR PRO LEU THR PHE GLY SER GLY THR LYS SEQRES 9 L 215 LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 223 ALA GLN GLU VAL LYS LEU LEU GLU SER GLY PRO GLY LEU SEQRES 2 H 223 VAL ALA PRO SER GLU SER LEU SER ILE THR CYS THR ILE SEQRES 3 H 223 SER GLY PHE SER LEU THR ASP ASP GLY VAL SER TRP ILE SEQRES 4 H 223 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL SEQRES 5 H 223 ILE TRP GLY GLY GLY SER THR TYR PHE ASN SER LEU PHE SEQRES 6 H 223 LYS SER ARG LEU SER ILE THR ARG ASP ASN SER LYS SER SEQRES 7 H 223 GLN VAL PHE LEU GLU MET ASP SER LEU GLN THR ASP ASP SEQRES 8 H 223 THR ALA MET TYR TYR CYS ALA LYS HIS ASP GLY HIS GLU SEQRES 9 H 223 THR MET ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 223 SER SER SER LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 223 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 223 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 223 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 223 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 223 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 223 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 223 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 18 H 223 THR SER MODRES 3VG0 ASN L 22 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET FUC A 3 10 HET ACT L 304 4 HET SO4 H 301 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *91(H2 O) HELIX 1 1 LYS L 81 LEU L 85 5 5 HELIX 2 2 SER L 123 SER L 129 1 7 HELIX 3 3 LYS L 185 ARG L 190 1 6 HELIX 4 4 SER H 30 ASP H 34 5 5 HELIX 5 5 GLN H 88 THR H 92 5 5 HELIX 6 6 SER H 162 SER H 164 5 3 HELIX 7 7 SER H 192 TRP H 194 5 3 HELIX 8 8 PRO H 206 SER H 209 5 4 SHEET 1 A 4 MET L 6 THR L 7 0 SHEET 2 A 4 VAL L 21 ALA L 27 -1 O LYS L 26 N THR L 7 SHEET 3 A 4 ASP L 72 ILE L 77 -1 O ILE L 77 N VAL L 21 SHEET 4 A 4 PHE L 64 SER L 69 -1 N THR L 65 O THR L 76 SHEET 1 B 6 PHE L 12 SER L 16 0 SHEET 2 B 6 THR L 104 LYS L 109 1 O GLU L 107 N MET L 13 SHEET 3 B 6 ASP L 87 GLN L 92 -1 N TYR L 88 O THR L 104 SHEET 4 B 6 VAL L 35 GLN L 40 -1 N GLN L 40 O ASP L 87 SHEET 5 B 6 GLN L 47 PHE L 51 -1 O LEU L 49 N TRP L 37 SHEET 6 B 6 ASN L 55 ARG L 56 -1 O ASN L 55 N PHE L 51 SHEET 1 C 4 PHE L 12 SER L 16 0 SHEET 2 C 4 THR L 104 LYS L 109 1 O GLU L 107 N MET L 13 SHEET 3 C 4 ASP L 87 GLN L 92 -1 N TYR L 88 O THR L 104 SHEET 4 C 4 THR L 99 PHE L 100 -1 O THR L 99 N GLN L 92 SHEET 1 D 4 THR L 116 PHE L 120 0 SHEET 2 D 4 GLY L 131 PHE L 141 -1 O ASN L 139 N THR L 116 SHEET 3 D 4 TYR L 175 THR L 184 -1 O SER L 179 N CYS L 136 SHEET 4 D 4 VAL L 161 TRP L 165 -1 N SER L 164 O SER L 178 SHEET 1 E 4 SER L 155 ARG L 157 0 SHEET 2 E 4 ASN L 147 ILE L 152 -1 N ILE L 152 O SER L 155 SHEET 3 E 4 SER L 193 THR L 199 -1 O THR L 199 N ASN L 147 SHEET 4 E 4 ILE L 207 ASN L 212 -1 O LYS L 209 N CYS L 196 SHEET 1 F 4 LYS H 5 SER H 9 0 SHEET 2 F 4 LEU H 20 SER H 27 -1 O THR H 25 N LEU H 7 SHEET 3 F 4 GLN H 79 MET H 84 -1 O VAL H 80 N CYS H 24 SHEET 4 F 4 LEU H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 G 6 LEU H 13 VAL H 14 0 SHEET 2 G 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 14 SHEET 3 G 6 ALA H 93 HIS H 100 -1 N ALA H 93 O VAL H 115 SHEET 4 G 6 VAL H 36 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 G 6 GLU H 48 ILE H 53 -1 O LEU H 50 N TRP H 38 SHEET 6 G 6 THR H 59 PHE H 61 -1 O TYR H 60 N VAL H 52 SHEET 1 H 4 LEU H 13 VAL H 14 0 SHEET 2 H 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 14 SHEET 3 H 4 ALA H 93 HIS H 100 -1 N ALA H 93 O VAL H 115 SHEET 4 H 4 MET H 106 TRP H 109 -1 O TYR H 108 N LYS H 99 SHEET 1 I 4 SER H 126 LEU H 130 0 SHEET 2 I 4 MET H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 I 4 LEU H 180 PRO H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 I 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 J 4 SER H 126 LEU H 130 0 SHEET 2 J 4 MET H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 J 4 LEU H 180 PRO H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 J 4 VAL H 175 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 K 3 THR H 157 TRP H 160 0 SHEET 2 K 3 THR H 200 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 K 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SSBOND 1 CYS L 25 CYS L 90 1555 1555 2.05 SSBOND 2 CYS L 136 CYS L 196 1555 1555 2.00 SSBOND 3 CYS H 24 CYS H 97 1555 1555 2.04 SSBOND 4 CYS H 146 CYS H 201 1555 1555 2.05 LINK ND2 ASN L 22 C1 NAG A 1 1555 1555 1.46 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.47 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.45 CISPEP 1 TYR L 96 PRO L 97 0 -12.02 CISPEP 2 TYR L 142 PRO L 143 0 2.55 CISPEP 3 PHE H 152 PRO H 153 0 -14.48 CISPEP 4 GLU H 154 PRO H 155 0 -5.77 CISPEP 5 TRP H 194 PRO H 195 0 6.22 CRYST1 139.219 39.966 105.132 90.00 128.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007183 0.000000 0.005623 0.00000 SCALE2 0.000000 0.025022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012080 0.00000