HEADER SIGNALING PROTEIN 04-AUG-11 3VG9 TITLE CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN ALLOSTERIC TITLE 2 INVERSE-AGONIST ANTIBODY AT 2.7 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-316; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTIBODY FAB FRAGMENT LIGHT CHAIN; COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ANTIBODY FAB FRAGMENT HEAVY CHAIN; COMPND 12 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADORA2A, ADORA2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9K; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS 7 TRANSMEMBRANE RECEPTOR, SIGNAL TRANSDUCTION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HINO,T.ARAKAWA,H.IWANARI,T.YURUGI-KOBAYASHI,C.IKEDA-SUNO,Y.NAKADA- AUTHOR 2 NAKURA,O.KUSANO-ARAI,S.WEYAND,T.SHIMAMURA,N.NOMURA,A.D.CAMERON, AUTHOR 3 T.KOBAYASHI,T.HAMAKUBO,S.IWATA,T.MURATA REVDAT 4 06-NOV-24 3VG9 1 REMARK REVDAT 3 08-NOV-23 3VG9 1 REMARK SEQADV REVDAT 2 15-FEB-12 3VG9 1 JRNL REVDAT 1 01-FEB-12 3VG9 0 JRNL AUTH T.HINO,T.ARAKAWA,H.IWANARI,T.YURUGI-KOBAYASHI,C.IKEDA-SUNO, JRNL AUTH 2 Y.NAKADA-NAKURA,O.KUSANO-ARAI,S.WEYAND,T.SHIMAMURA,N.NOMURA, JRNL AUTH 3 A.D.CAMERON,T.KOBAYASHI,T.HAMAKUBO,S.IWATA,T.MURATA JRNL TITL G-PROTEIN-COUPLED RECEPTOR INACTIVATION BY AN ALLOSTERIC JRNL TITL 2 INVERSE-AGONIST ANTIBODY JRNL REF NATURE V. 482 237 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22286059 JRNL DOI 10.1038/NATURE10750 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 30910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9957 - 5.9563 0.90 2666 129 0.2375 0.2743 REMARK 3 2 5.9563 - 4.7486 0.95 2766 125 0.1718 0.1891 REMARK 3 3 4.7486 - 4.1544 0.92 2627 148 0.1554 0.2022 REMARK 3 4 4.1544 - 3.7774 0.94 2699 150 0.1644 0.2204 REMARK 3 5 3.7774 - 3.5082 0.93 2715 145 0.1850 0.2197 REMARK 3 6 3.5082 - 3.3023 0.92 2592 138 0.2083 0.2583 REMARK 3 7 3.3023 - 3.1376 0.94 2703 139 0.2177 0.2697 REMARK 3 8 3.1376 - 3.0015 0.95 2723 152 0.2303 0.2559 REMARK 3 9 3.0015 - 2.8863 0.93 2649 147 0.2701 0.3302 REMARK 3 10 2.8863 - 2.7870 0.90 2566 136 0.3323 0.3656 REMARK 3 11 2.7870 - 2.7000 0.93 2650 145 0.3616 0.3872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 80.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.82090 REMARK 3 B22 (A**2) : 1.40610 REMARK 3 B33 (A**2) : 15.41470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -20.18040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6230 REMARK 3 ANGLE : 1.032 8082 REMARK 3 CHIRALITY : 0.072 916 REMARK 3 PLANARITY : 0.005 996 REMARK 3 DIHEDRAL : 17.830 2147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -61.2381 -9.3148 -37.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.7887 REMARK 3 T33: 0.4834 T12: -0.0516 REMARK 3 T13: -0.5699 T23: 0.1294 REMARK 3 L TENSOR REMARK 3 L11: 0.0495 L22: 0.0531 REMARK 3 L33: 0.0848 L12: 0.0197 REMARK 3 L13: 0.0282 L23: -0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: 0.0805 S13: -0.0055 REMARK 3 S21: -0.1023 S22: 0.0714 S23: 0.1100 REMARK 3 S31: 0.0360 S32: -0.1416 S33: 0.1309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -20.5598 -16.5938 4.8453 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.3269 REMARK 3 T33: 0.3150 T12: -0.0412 REMARK 3 T13: -0.0539 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.1924 L22: 0.1334 REMARK 3 L33: 0.0697 L12: 0.0537 REMARK 3 L13: 0.0601 L23: 0.0271 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0975 S13: -0.0330 REMARK 3 S21: -0.0626 S22: 0.0069 S23: 0.0222 REMARK 3 S31: -0.0023 S32: -0.0953 S33: -0.0034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -19.3680 0.4409 0.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.2690 REMARK 3 T33: 0.3964 T12: 0.0471 REMARK 3 T13: -0.0543 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 0.0967 L22: 0.1638 REMARK 3 L33: 0.0294 L12: -0.0018 REMARK 3 L13: -0.0006 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.0147 S13: 0.0651 REMARK 3 S21: -0.0342 S22: -0.0121 S23: -0.1105 REMARK 3 S31: -0.0499 S32: -0.0027 S33: 0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000095007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 72.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EML AND 1P7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M MES, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 0.5% OCTHYL THIOGLUCOSIDE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.59000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.59000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 149 REMARK 465 LYS A 150 REMARK 465 GLU A 151 REMARK 465 GLY A 152 REMARK 465 LYS A 153 REMARK 465 GLN A 154 REMARK 465 HIS A 155 REMARK 465 GLN A 310 REMARK 465 GLN A 311 REMARK 465 GLU A 312 REMARK 465 PRO A 313 REMARK 465 PHE A 314 REMARK 465 LYS A 315 REMARK 465 ALA A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 ASP C 141 REMARK 465 THR C 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 -67.94 -121.02 REMARK 500 PHE A 83 -56.40 -130.17 REMARK 500 GLN A 157 -62.18 -126.44 REMARK 500 TYR A 179 -62.67 -124.73 REMARK 500 ASN A 181 -74.29 -115.00 REMARK 500 ALA A 184 -64.46 -99.01 REMARK 500 VAL A 186 -63.14 -127.94 REMARK 500 GLU A 219 -68.81 -131.85 REMARK 500 SER A 263 -178.51 -68.01 REMARK 500 PRO A 266 -177.26 -62.74 REMARK 500 TYR B 30 -121.18 62.81 REMARK 500 LEU B 47 -60.72 -120.72 REMARK 500 ALA B 51 -29.55 72.89 REMARK 500 ALA B 57 -2.71 79.20 REMARK 500 ASN B 76 -78.12 -86.20 REMARK 500 LYS B 169 -65.40 -100.82 REMARK 500 ASN B 190 -63.29 -122.48 REMARK 500 LYS C 43 -77.49 -123.24 REMARK 500 ALA C 92 -174.16 -173.57 REMARK 500 PRO C 137 151.32 -49.53 REMARK 500 PHE C 157 138.15 -177.07 REMARK 500 SER C 183 -117.33 50.67 REMARK 500 PRO C 200 42.54 -92.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZMA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VGA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN REMARK 900 ALLOSTERIC INVERSE-AGONIST ANTIBODY AT 3.1 A RESOLUTION DBREF 3VG9 A 1 316 UNP P29274 AA2AR_HUMAN 1 316 DBREF 3VG9 B 1 214 PDB 3VG9 3VG9 1 214 DBREF 3VG9 C 1 226 PDB 3VG9 3VG9 1 226 SEQADV 3VG9 GLN A 154 UNP P29274 ASN 154 ENGINEERED MUTATION SEQADV 3VG9 HIS A 317 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 318 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 319 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 320 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 321 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 322 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 323 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 324 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 325 UNP P29274 EXPRESSION TAG SEQADV 3VG9 HIS A 326 UNP P29274 EXPRESSION TAG SEQRES 1 A 326 MET PRO ILE MET GLY SER SER VAL TYR ILE THR VAL GLU SEQRES 2 A 326 LEU ALA ILE ALA VAL LEU ALA ILE LEU GLY ASN VAL LEU SEQRES 3 A 326 VAL CYS TRP ALA VAL TRP LEU ASN SER ASN LEU GLN ASN SEQRES 4 A 326 VAL THR ASN TYR PHE VAL VAL SER LEU ALA ALA ALA ASP SEQRES 5 A 326 ILE ALA VAL GLY VAL LEU ALA ILE PRO PHE ALA ILE THR SEQRES 6 A 326 ILE SER THR GLY PHE CYS ALA ALA CYS HIS GLY CYS LEU SEQRES 7 A 326 PHE ILE ALA CYS PHE VAL LEU VAL LEU THR GLN SER SER SEQRES 8 A 326 ILE PHE SER LEU LEU ALA ILE ALA ILE ASP ARG TYR ILE SEQRES 9 A 326 ALA ILE ARG ILE PRO LEU ARG TYR ASN GLY LEU VAL THR SEQRES 10 A 326 GLY THR ARG ALA LYS GLY ILE ILE ALA ILE CYS TRP VAL SEQRES 11 A 326 LEU SER PHE ALA ILE GLY LEU THR PRO MET LEU GLY TRP SEQRES 12 A 326 ASN ASN CYS GLY GLN PRO LYS GLU GLY LYS GLN HIS SER SEQRES 13 A 326 GLN GLY CYS GLY GLU GLY GLN VAL ALA CYS LEU PHE GLU SEQRES 14 A 326 ASP VAL VAL PRO MET ASN TYR MET VAL TYR PHE ASN PHE SEQRES 15 A 326 PHE ALA CYS VAL LEU VAL PRO LEU LEU LEU MET LEU GLY SEQRES 16 A 326 VAL TYR LEU ARG ILE PHE LEU ALA ALA ARG ARG GLN LEU SEQRES 17 A 326 LYS GLN MET GLU SER GLN PRO LEU PRO GLY GLU ARG ALA SEQRES 18 A 326 ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA LYS SER SEQRES 19 A 326 LEU ALA ILE ILE VAL GLY LEU PHE ALA LEU CYS TRP LEU SEQRES 20 A 326 PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE CYS PRO SEQRES 21 A 326 ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR LEU ALA SEQRES 22 A 326 ILE VAL LEU SER HIS THR ASN SER VAL VAL ASN PRO PHE SEQRES 23 A 326 ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN THR PHE SEQRES 24 A 326 ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN GLN GLU SEQRES 25 A 326 PRO PHE LYS ALA HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS SEQRES 1 B 214 ASP ILE VAL MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 B 214 SER VAL GLY ASP THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 214 GLU PHE ILE TYR SER SER LEU THR TRP TYR GLN GLN LYS SEQRES 4 B 214 GLN GLY GLY SER PRO GLN LEU LEU VAL TYR ALA ALA THR SEQRES 5 B 214 ASN LEU ALA ASP ALA VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR GLN PHE SER LEU LYS ILE ASN ARG LEU SEQRES 7 B 214 GLN PRO GLU ASP PHE GLY THR TYR TYR CYS GLN HIS PHE SEQRES 8 B 214 TYR GLY SER THR TRP ALA PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 B 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 B 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 B 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 B 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 B 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 B 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 B 214 PHE ASN ARG ASN GLU CYS SEQRES 1 C 226 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 C 226 PRO GLY SER SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 C 226 ASP SER PHE THR ALA TYR ASN MET ASN TRP VAL LYS GLN SEQRES 4 C 226 SER HIS GLY LYS SER LEU GLU TRP ILE GLY ASN ILE ASN SEQRES 5 C 226 PRO TYR TYR GLY SER THR ARG TYR ASN GLN LYS PHE LYS SEQRES 6 C 226 GLY LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 C 226 ALA TYR ILE GLN LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 C 226 ALA VAL TYR TYR CYS ALA ARG GLU GLY ASN TYR TYR ASP SEQRES 9 C 226 GLY GLY SER VAL ARG TYR PHE ASP TYR TRP GLY GLN GLY SEQRES 10 C 226 THR THR LEU THR VAL SER SER ALA LYS THR THR ALA PRO SEQRES 11 C 226 SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SER SEQRES 12 C 226 GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR SEQRES 13 C 226 PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER SEQRES 14 C 226 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 C 226 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SEQRES 16 C 226 SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL SEQRES 17 C 226 ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE SEQRES 18 C 226 GLU PRO ARG GLY PRO HET ZMA A 401 25 HET STE A 402 20 HET STE A 403 20 HET STE A 404 20 HET STE A 405 20 HET STE A 406 20 HET STE A 407 20 HET LMT A 408 35 HETNAM ZMA 4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3, HETNAM 2 ZMA 5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL HETNAM STE STEARIC ACID HETNAM LMT DODECYL-BETA-D-MALTOSIDE FORMUL 4 ZMA C16 H15 N7 O2 FORMUL 5 STE 6(C18 H36 O2) FORMUL 11 LMT C24 H46 O11 FORMUL 12 HOH *70(H2 O) HELIX 1 1 SER A 6 ASN A 34 1 29 HELIX 2 2 SER A 35 GLN A 38 5 4 HELIX 3 3 ASN A 39 LEU A 58 1 20 HELIX 4 4 LEU A 58 ILE A 66 1 9 HELIX 5 5 SER A 67 GLY A 69 5 3 HELIX 6 6 ALA A 73 CYS A 82 1 10 HELIX 7 7 PHE A 83 ILE A 108 1 26 HELIX 8 8 ILE A 108 VAL A 116 1 9 HELIX 9 9 THR A 117 LEU A 137 1 21 HELIX 10 10 THR A 138 GLY A 142 5 5 HELIX 11 11 LEU A 167 VAL A 172 1 6 HELIX 12 12 PRO A 173 VAL A 178 1 6 HELIX 13 13 VAL A 186 GLN A 214 1 29 HELIX 14 14 ALA A 221 CYS A 259 1 39 HELIX 15 15 LEU A 269 ASN A 280 1 12 HELIX 16 16 VAL A 283 ILE A 292 1 10 HELIX 17 17 ILE A 292 VAL A 307 1 16 HELIX 18 18 GLN B 79 PHE B 83 5 5 HELIX 19 19 SER B 121 GLY B 128 1 8 HELIX 20 20 LYS B 183 ARG B 188 1 6 HELIX 21 21 SER C 28 TYR C 32 5 5 HELIX 22 22 GLN C 62 LYS C 65 5 4 HELIX 23 23 THR C 87 SER C 91 5 5 HELIX 24 24 SER C 167 SER C 169 5 3 HELIX 25 25 PRO C 211 SER C 214 5 4 SHEET 1 A 4 MET B 4 SER B 7 0 SHEET 2 A 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 A 4 GLN B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 A 4 PHE B 62 SER B 67 -1 N SER B 63 O LYS B 74 SHEET 1 B 6 SER B 10 ALA B 13 0 SHEET 2 B 6 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 B 6 GLY B 84 HIS B 90 -1 N GLY B 84 O LEU B 104 SHEET 4 B 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 B 6 GLN B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 B 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 C 4 SER B 10 ALA B 13 0 SHEET 2 C 4 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 C 4 GLY B 84 HIS B 90 -1 N GLY B 84 O LEU B 104 SHEET 4 C 4 ALA B 97 PHE B 98 -1 O ALA B 97 N HIS B 90 SHEET 1 D 4 THR B 114 PHE B 118 0 SHEET 2 D 4 GLY B 129 PHE B 139 -1 O VAL B 133 N PHE B 118 SHEET 3 D 4 TYR B 173 THR B 182 -1 O TYR B 173 N PHE B 139 SHEET 4 D 4 VAL B 159 TRP B 163 -1 N LEU B 160 O THR B 178 SHEET 1 E 4 SER B 153 GLU B 154 0 SHEET 2 E 4 ASN B 145 ILE B 150 -1 N ILE B 150 O SER B 153 SHEET 3 E 4 SER B 191 THR B 197 -1 O THR B 193 N LYS B 149 SHEET 4 E 4 ILE B 205 ASN B 210 -1 O ILE B 205 N ALA B 196 SHEET 1 F 4 GLN C 3 GLN C 6 0 SHEET 2 F 4 VAL C 18 SER C 25 -1 O LYS C 23 N GLN C 5 SHEET 3 F 4 THR C 78 LEU C 83 -1 O ILE C 81 N ILE C 20 SHEET 4 F 4 ALA C 68 ASP C 73 -1 N ASP C 73 O THR C 78 SHEET 1 G 6 GLU C 10 VAL C 12 0 SHEET 2 G 6 THR C 118 VAL C 122 1 O THR C 119 N GLU C 10 SHEET 3 G 6 ALA C 92 TYR C 103 -1 N TYR C 94 O THR C 118 SHEET 4 G 6 MET C 34 SER C 40 -1 N ASN C 35 O ALA C 97 SHEET 5 G 6 SER C 44 ASN C 52 -1 O ILE C 48 N TRP C 36 SHEET 6 G 6 SER C 57 TYR C 60 -1 O SER C 57 N ASN C 52 SHEET 1 H 4 GLU C 10 VAL C 12 0 SHEET 2 H 4 THR C 118 VAL C 122 1 O THR C 119 N GLU C 10 SHEET 3 H 4 ALA C 92 TYR C 103 -1 N TYR C 94 O THR C 118 SHEET 4 H 4 SER C 107 TRP C 114 -1 O VAL C 108 N TYR C 102 SHEET 1 I 4 SER C 131 LEU C 135 0 SHEET 2 I 4 SER C 146 TYR C 156 -1 O LEU C 152 N TYR C 133 SHEET 3 I 4 LEU C 185 THR C 195 -1 O LEU C 188 N VAL C 153 SHEET 4 I 4 VAL C 174 THR C 176 -1 N HIS C 175 O SER C 191 SHEET 1 J 4 SER C 131 LEU C 135 0 SHEET 2 J 4 SER C 146 TYR C 156 -1 O LEU C 152 N TYR C 133 SHEET 3 J 4 LEU C 185 THR C 195 -1 O LEU C 188 N VAL C 153 SHEET 4 J 4 VAL C 180 GLN C 182 -1 N GLN C 182 O LEU C 185 SHEET 1 K 3 THR C 162 TRP C 165 0 SHEET 2 K 3 THR C 205 HIS C 210 -1 O ASN C 207 N THR C 164 SHEET 3 K 3 THR C 215 LYS C 220 -1 O LYS C 219 N CYS C 206 SSBOND 1 CYS A 71 CYS A 159 1555 1555 2.02 SSBOND 2 CYS A 74 CYS A 146 1555 1555 2.03 SSBOND 3 CYS A 77 CYS A 166 1555 1555 2.11 SSBOND 4 CYS A 259 CYS A 262 1555 1555 2.80 SSBOND 5 CYS B 23 CYS B 88 1555 1555 2.05 SSBOND 6 CYS B 134 CYS B 194 1555 1555 2.03 SSBOND 7 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 8 CYS C 151 CYS C 206 1555 1555 2.03 CISPEP 1 LEU A 216 PRO A 217 0 4.68 CISPEP 2 SER B 7 PRO B 8 0 -3.13 CISPEP 3 TYR B 140 PRO B 141 0 -0.36 CISPEP 4 PHE C 157 PRO C 158 0 -4.26 CISPEP 5 GLU C 159 PRO C 160 0 -4.93 CISPEP 6 TRP C 199 PRO C 200 0 -3.46 CISPEP 7 GLY C 225 PRO C 226 0 0.65 SITE 1 AC1 9 LEU A 85 PHE A 168 GLU A 169 TRP A 246 SITE 2 AC1 9 LEU A 249 HIS A 250 ASN A 253 MET A 270 SITE 3 AC1 9 TYR A 271 SITE 1 AC2 3 TYR A 103 LEU A 191 LMT A 408 SITE 1 AC3 6 LEU A 247 TYR A 290 ARG A 291 HOH A 328 SITE 2 AC3 6 STE A 404 STE A 407 SITE 1 AC4 7 LEU A 190 LEU A 191 LEU A 194 ALA A 243 SITE 2 AC4 7 ARG A 291 STE A 403 STE A 407 SITE 1 AC5 4 CYS A 28 TRP A 32 TYR A 43 STE A 406 SITE 1 AC6 2 TRP A 129 STE A 405 SITE 1 AC7 4 LEU A 202 LEU A 247 STE A 403 STE A 404 SITE 1 AC8 4 TYR A 179 ARG A 199 ARG A 206 STE A 402 CRYST1 121.180 90.150 113.550 90.00 98.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008252 0.000000 0.001174 0.00000 SCALE2 0.000000 0.011093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008895 0.00000