HEADER LIGASE 14-AUG-11 3VGJ TITLE CRYSTAL OF PLASMODIUM FALCIPARUM TYROSYL-TRNA SYNTHETASE (PFTYRRS)IN TITLE 2 COMPLEX WITH ADENYLATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: MAL8P1.125; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TYRRS, SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.BANDAY,M.YOGAVEL,T.K.BHATT,S.KHAN,A.SHARMA,A.SHARMA REVDAT 4 20-MAR-24 3VGJ 1 REMARK LINK REVDAT 3 22-NOV-17 3VGJ 1 REMARK REVDAT 2 04-MAR-15 3VGJ 1 FORMUL HET HETATM HETNAM REVDAT 2 2 1 LINK REVDAT 1 25-JUL-12 3VGJ 0 JRNL AUTH T.K.BHATT,S.KHAN,V.P.DWIVEDI,M.M.BANDAY,A.SHARMA,A.CHANDELE, JRNL AUTH 2 N.CAMACHO,L.R.DE POUPLANA,Y.WU,A.G.CRAIG,A.T.MIKKONEN, JRNL AUTH 3 A.G.MAIER,M.YOGAVEL,A.SHARMA JRNL TITL MALARIA PARASITE TYROSYL-TRNA SYNTHETASE SECRETION TRIGGERS JRNL TITL 2 PRO-INFLAMMATORY RESPONSES. JRNL REF NAT COMMUN V. 2 530 2011 JRNL REFN ESSN 2041-1723 JRNL PMID 22068597 JRNL DOI 10.1038/NCOMMS1522 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 42842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.2677 - 2.2140 0.00 0 111 0.2427 0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 72.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78320 REMARK 3 B22 (A**2) : 2.89980 REMARK 3 B33 (A**2) : -1.11670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.65730 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 20:56) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9785 -6.6603 46.2555 REMARK 3 T TENSOR REMARK 3 T11: 0.5473 T22: 0.7986 REMARK 3 T33: 0.9932 T12: 0.2265 REMARK 3 T13: 0.1067 T23: -0.4783 REMARK 3 L TENSOR REMARK 3 L11: -0.1646 L22: 0.8519 REMARK 3 L33: 0.2730 L12: -0.3262 REMARK 3 L13: -0.0531 L23: 0.1228 REMARK 3 S TENSOR REMARK 3 S11: 0.3757 S12: -0.4997 S13: 0.2181 REMARK 3 S21: 0.0526 S22: 0.4156 S23: -1.1443 REMARK 3 S31: 0.3526 S32: 0.5213 S33: -0.5132 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 57:245) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6820 -0.6689 49.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.3232 REMARK 3 T33: 0.3016 T12: 0.0681 REMARK 3 T13: 0.0299 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.2486 L22: 0.4044 REMARK 3 L33: 1.8854 L12: -0.1025 REMARK 3 L13: 0.9984 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.0452 S13: -0.0917 REMARK 3 S21: -0.0205 S22: 0.1093 S23: 0.0500 REMARK 3 S31: -0.0457 S32: -0.0173 S33: -0.1034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 246:369) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0580 -4.9310 74.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.3183 T22: 0.4752 REMARK 3 T33: 0.2687 T12: -0.0040 REMARK 3 T13: 0.0258 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.9058 L22: 0.9064 REMARK 3 L33: 1.7138 L12: -0.0425 REMARK 3 L13: 0.2725 L23: -0.6030 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.2316 S13: -0.0410 REMARK 3 S21: 0.2033 S22: 0.0337 S23: 0.1059 REMARK 3 S31: 0.1146 S32: -0.4595 S33: -0.0155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 18:55) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9363 13.0857 29.3853 REMARK 3 T TENSOR REMARK 3 T11: 0.5285 T22: 0.7492 REMARK 3 T33: 0.7575 T12: 0.2258 REMARK 3 T13: 0.2232 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.1292 L22: 1.5744 REMARK 3 L33: 0.4025 L12: -0.0832 REMARK 3 L13: 0.0996 L23: 0.1110 REMARK 3 S TENSOR REMARK 3 S11: 0.3888 S12: 0.0593 S13: 0.2737 REMARK 3 S21: -0.3562 S22: -0.2321 S23: 0.8584 REMARK 3 S31: -0.1135 S32: -0.8396 S33: -0.1711 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 56:237) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0249 4.2228 27.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.2950 REMARK 3 T33: 0.3432 T12: 0.0392 REMARK 3 T13: 0.0191 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.5792 L22: 0.7187 REMARK 3 L33: 2.0498 L12: -0.1596 REMARK 3 L13: 0.8378 L23: -0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.1314 S13: -0.0079 REMARK 3 S21: 0.1099 S22: 0.0820 S23: -0.0730 REMARK 3 S31: -0.1055 S32: -0.1137 S33: -0.0502 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 238:369) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5479 -2.4529 4.3372 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.2228 REMARK 3 T33: 0.4551 T12: -0.0034 REMARK 3 T13: -0.0918 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.4900 L22: 2.9072 REMARK 3 L33: 0.8143 L12: -0.0821 REMARK 3 L13: 0.9432 L23: 0.0276 REMARK 3 S TENSOR REMARK 3 S11: 0.1099 S12: 0.1499 S13: -0.2869 REMARK 3 S21: -0.4074 S22: 0.0797 S23: 0.6659 REMARK 3 S31: 0.1787 S32: 0.0352 S33: -0.1694 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000095016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRROS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM MGCL2, 10MM ATP, 2MM L-TYROSINE, REMARK 280 2.4MM SODIUM MALONATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.78000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLU A 12 REMARK 465 ILE A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 LYS A 373 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ASP B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 GLU B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 LYS B 16 REMARK 465 LYS B 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ILE A 24 CG1 CG2 CD1 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LEU A 31 CG CD1 CD2 REMARK 470 LEU A 35 CG CD1 CD2 REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 THR A 372 OG1 CG2 REMARK 470 GLN B 19 CG CD OE1 NE2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 171 CE NZ REMARK 470 GLN B 318 CG CD OE1 NE2 REMARK 470 ILE B 357 CG1 CG2 CD1 REMARK 470 LYS B 370 CG CD CE NZ REMARK 470 VAL B 371 CG1 CG2 REMARK 470 THR B 372 OG1 CG2 REMARK 470 LYS B 373 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 656 2.09 REMARK 500 O HOH B 513 O HOH B 668 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 358 CD GLU B 358 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 205 77.87 -111.63 REMARK 500 CYS A 275 77.17 -150.45 REMARK 500 ASN A 278 -14.46 74.69 REMARK 500 ASN A 298 28.08 48.79 REMARK 500 ASN A 356 95.71 -67.63 REMARK 500 SER B 107 17.59 56.57 REMARK 500 GLN B 205 76.92 -119.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q11 RELATED DB: PDB REMARK 900 RELATED ID: 1N3L RELATED DB: PDB DBREF 3VGJ A 1 373 UNP Q8IAR7 Q8IAR7_PLAF7 1 373 DBREF 3VGJ B 1 373 UNP Q8IAR7 Q8IAR7_PLAF7 1 373 SEQRES 1 A 373 MET GLU THR THR ASP THR LYS ARG GLU GLU GLN GLU ILE SEQRES 2 A 373 GLU GLU LYS LYS ALA GLN GLU GLU SER LYS ILE GLU ASP SEQRES 3 A 373 VAL ASP LYS ILE LEU ASN ASP ILE LEU SER ILE SER SER SEQRES 4 A 373 GLU CYS ILE GLN PRO ASP GLU LEU ARG VAL LYS LEU LEU SEQRES 5 A 373 LEU LYS ARG LYS LEU ILE CYS TYR ASP GLY PHE GLU PRO SEQRES 6 A 373 SER GLY ARG MET HIS ILE ALA GLN GLY LEU LEU LYS SER SEQRES 7 A 373 ILE ILE VAL ASN LYS LEU THR SER ASN GLY CYS THR PHE SEQRES 8 A 373 ILE PHE TRP ILE ALA ASP TRP PHE ALA HIS LEU ASN ASN SEQRES 9 A 373 LYS MET SER GLY ASP LEU LYS LYS ILE LYS LYS VAL GLY SEQRES 10 A 373 SER TYR PHE ILE GLU VAL TRP LYS SER CYS GLY MET ASN SEQRES 11 A 373 MET GLU ASN VAL GLN PHE LEU TRP ALA SER GLU GLU ILE SEQRES 12 A 373 ASN LYS LYS PRO ASN GLU TYR TRP SER LEU VAL LEU ASP SEQRES 13 A 373 ILE SER ARG SER PHE ASN ILE ASN ARG MET LYS ARG CYS SEQRES 14 A 373 LEU LYS ILE MET GLY ARG SER GLU GLY GLU GLU ASN TYR SEQRES 15 A 373 CYS SER GLN ILE LEU TYR PRO CYS MET GLN CYS ALA ASP SEQRES 16 A 373 ILE PHE PHE LEU ASN VAL ASP ILE CYS GLN LEU GLY ILE SEQRES 17 A 373 ASP GLN ARG LYS VAL ASN MET LEU ALA ARG GLU TYR CYS SEQRES 18 A 373 ASP ILE LYS LYS ILE LYS LYS LYS PRO VAL ILE LEU SER SEQRES 19 A 373 HIS GLY MET LEU PRO GLY LEU LEU GLU GLY GLN GLU LYS SEQRES 20 A 373 MET SER LYS SER ASP GLU ASN SER ALA ILE PHE MET ASP SEQRES 21 A 373 ASP SER GLU SER ASP VAL ASN ARG LYS ILE LYS LYS ALA SEQRES 22 A 373 TYR CYS PRO PRO ASN VAL ILE GLU ASN ASN PRO ILE TYR SEQRES 23 A 373 ALA TYR ALA LYS SER ILE ILE PHE PRO SER TYR ASN GLU SEQRES 24 A 373 PHE ASN LEU VAL ARG LYS GLU LYS ASN GLY GLY ASP LYS SEQRES 25 A 373 THR TYR TYR THR LEU GLN GLU LEU GLU HIS ASP TYR VAL SEQRES 26 A 373 ASN GLY PHE ILE HIS PRO LEU ASP LEU LYS ASP ASN VAL SEQRES 27 A 373 ALA MET TYR ILE ASN LYS LEU LEU GLN PRO VAL ARG ASP SEQRES 28 A 373 HIS PHE GLN ASN ASN ILE GLU ALA LYS ASN LEU LEU ASN SEQRES 29 A 373 GLU ILE LYS LYS TYR LYS VAL THR LYS SEQRES 1 B 373 MET GLU THR THR ASP THR LYS ARG GLU GLU GLN GLU ILE SEQRES 2 B 373 GLU GLU LYS LYS ALA GLN GLU GLU SER LYS ILE GLU ASP SEQRES 3 B 373 VAL ASP LYS ILE LEU ASN ASP ILE LEU SER ILE SER SER SEQRES 4 B 373 GLU CYS ILE GLN PRO ASP GLU LEU ARG VAL LYS LEU LEU SEQRES 5 B 373 LEU LYS ARG LYS LEU ILE CYS TYR ASP GLY PHE GLU PRO SEQRES 6 B 373 SER GLY ARG MET HIS ILE ALA GLN GLY LEU LEU LYS SER SEQRES 7 B 373 ILE ILE VAL ASN LYS LEU THR SER ASN GLY CYS THR PHE SEQRES 8 B 373 ILE PHE TRP ILE ALA ASP TRP PHE ALA HIS LEU ASN ASN SEQRES 9 B 373 LYS MET SER GLY ASP LEU LYS LYS ILE LYS LYS VAL GLY SEQRES 10 B 373 SER TYR PHE ILE GLU VAL TRP LYS SER CYS GLY MET ASN SEQRES 11 B 373 MET GLU ASN VAL GLN PHE LEU TRP ALA SER GLU GLU ILE SEQRES 12 B 373 ASN LYS LYS PRO ASN GLU TYR TRP SER LEU VAL LEU ASP SEQRES 13 B 373 ILE SER ARG SER PHE ASN ILE ASN ARG MET LYS ARG CYS SEQRES 14 B 373 LEU LYS ILE MET GLY ARG SER GLU GLY GLU GLU ASN TYR SEQRES 15 B 373 CYS SER GLN ILE LEU TYR PRO CYS MET GLN CYS ALA ASP SEQRES 16 B 373 ILE PHE PHE LEU ASN VAL ASP ILE CYS GLN LEU GLY ILE SEQRES 17 B 373 ASP GLN ARG LYS VAL ASN MET LEU ALA ARG GLU TYR CYS SEQRES 18 B 373 ASP ILE LYS LYS ILE LYS LYS LYS PRO VAL ILE LEU SER SEQRES 19 B 373 HIS GLY MET LEU PRO GLY LEU LEU GLU GLY GLN GLU LYS SEQRES 20 B 373 MET SER LYS SER ASP GLU ASN SER ALA ILE PHE MET ASP SEQRES 21 B 373 ASP SER GLU SER ASP VAL ASN ARG LYS ILE LYS LYS ALA SEQRES 22 B 373 TYR CYS PRO PRO ASN VAL ILE GLU ASN ASN PRO ILE TYR SEQRES 23 B 373 ALA TYR ALA LYS SER ILE ILE PHE PRO SER TYR ASN GLU SEQRES 24 B 373 PHE ASN LEU VAL ARG LYS GLU LYS ASN GLY GLY ASP LYS SEQRES 25 B 373 THR TYR TYR THR LEU GLN GLU LEU GLU HIS ASP TYR VAL SEQRES 26 B 373 ASN GLY PHE ILE HIS PRO LEU ASP LEU LYS ASP ASN VAL SEQRES 27 B 373 ALA MET TYR ILE ASN LYS LEU LEU GLN PRO VAL ARG ASP SEQRES 28 B 373 HIS PHE GLN ASN ASN ILE GLU ALA LYS ASN LEU LEU ASN SEQRES 29 B 373 GLU ILE LYS LYS TYR LYS VAL THR LYS HET TYR A 401 12 HET AMP A 402 23 HET TYR B 401 12 HET AMP B 402 23 HETNAM TYR TYROSINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 TYR 2(C9 H11 N O3) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *331(H2 O) HELIX 1 1 GLU A 20 SER A 38 1 19 HELIX 2 2 GLN A 43 LYS A 54 1 12 HELIX 3 3 HIS A 70 SER A 86 1 17 HELIX 4 4 ALA A 96 ASN A 103 1 8 HELIX 5 5 ASN A 104 GLY A 108 5 5 HELIX 6 6 ASP A 109 CYS A 127 1 19 HELIX 7 7 ALA A 139 LYS A 146 1 8 HELIX 8 8 LYS A 146 ARG A 159 1 14 HELIX 9 9 ASN A 162 ARG A 168 1 7 HELIX 10 10 CYS A 169 GLY A 174 5 6 HELIX 11 11 CYS A 183 LEU A 199 1 17 HELIX 12 12 GLY A 207 ASP A 209 5 3 HELIX 13 13 GLN A 210 LYS A 225 1 16 HELIX 14 14 SER A 262 ALA A 273 1 12 HELIX 15 15 ASN A 283 ILE A 292 1 10 HELIX 16 16 ILE A 292 ASN A 298 1 7 HELIX 17 17 LYS A 305 GLY A 309 5 5 HELIX 18 18 THR A 316 ASN A 326 1 11 HELIX 19 19 HIS A 330 ASN A 356 1 27 HELIX 20 20 ASN A 356 TYR A 369 1 14 HELIX 21 21 GLU B 20 SER B 36 1 17 HELIX 22 22 GLN B 43 LEU B 52 1 10 HELIX 23 23 GLY B 74 SER B 86 1 13 HELIX 24 24 ALA B 96 ASN B 103 1 8 HELIX 25 25 ASN B 104 GLY B 108 5 5 HELIX 26 26 ASP B 109 LYS B 125 1 17 HELIX 27 27 ALA B 139 LYS B 146 1 8 HELIX 28 28 LYS B 146 ARG B 159 1 14 HELIX 29 29 ASN B 162 ARG B 168 1 7 HELIX 30 30 CYS B 169 GLY B 174 5 6 HELIX 31 31 CYS B 183 LEU B 199 1 17 HELIX 32 32 GLY B 207 ASP B 209 5 3 HELIX 33 33 GLN B 210 LYS B 224 1 15 HELIX 34 34 SER B 262 LYS B 272 1 11 HELIX 35 35 ASN B 283 ILE B 292 1 10 HELIX 36 36 ILE B 292 ASN B 298 1 7 HELIX 37 37 LYS B 305 GLY B 309 5 5 HELIX 38 38 THR B 316 ASN B 326 1 11 HELIX 39 39 HIS B 330 ASN B 356 1 27 HELIX 40 40 ASN B 356 LYS B 368 1 13 SHEET 1 A 6 GLU A 40 ILE A 42 0 SHEET 2 A 6 VAL A 231 SER A 234 -1 O ILE A 232 N ILE A 42 SHEET 3 A 6 ILE A 203 CYS A 204 1 N CYS A 204 O LEU A 233 SHEET 4 A 6 ILE A 58 PHE A 63 1 O ILE A 58 N ILE A 203 SHEET 5 A 6 THR A 90 ILE A 95 1 O ILE A 92 N CYS A 59 SHEET 6 A 6 VAL A 134 TRP A 138 1 O GLN A 135 N PHE A 93 SHEET 1 B 2 PHE A 300 LEU A 302 0 SHEET 2 B 2 LYS A 312 TYR A 314 -1 O LYS A 312 N LEU A 302 SHEET 1 C 6 GLU B 40 ILE B 42 0 SHEET 2 C 6 VAL B 231 SER B 234 -1 O ILE B 232 N ILE B 42 SHEET 3 C 6 ILE B 203 CYS B 204 1 N CYS B 204 O LEU B 233 SHEET 4 C 6 LEU B 57 PHE B 63 1 O ILE B 58 N ILE B 203 SHEET 5 C 6 CYS B 89 ILE B 95 1 O THR B 90 N CYS B 59 SHEET 6 C 6 VAL B 134 TRP B 138 1 O GLN B 135 N PHE B 93 SHEET 1 D 2 PHE B 300 LEU B 302 0 SHEET 2 D 2 LYS B 312 TYR B 314 -1 O TYR B 314 N PHE B 300 LINK C TYR A 401 O3P AMP A 402 1555 1555 1.40 LINK C TYR B 401 O3P AMP B 402 1555 1555 1.39 CISPEP 1 ILE A 42 GLN A 43 0 -5.19 CISPEP 2 ILE B 42 GLN B 43 0 -9.48 SITE 1 AC1 11 TYR A 60 GLY A 62 GLU A 64 TRP A 94 SITE 2 AC1 11 ALA A 96 ILE A 172 TYR A 188 GLN A 192 SITE 3 AC1 11 ASP A 195 GLN A 210 AMP A 402 SITE 1 AC2 21 ASP A 61 GLY A 62 PHE A 63 GLU A 64 SITE 2 AC2 21 HIS A 70 ALA A 72 GLN A 73 LEU A 206 SITE 3 AC2 21 GLY A 207 ASP A 209 GLN A 210 HIS A 235 SITE 4 AC2 21 GLY A 236 MET A 237 LEU A 238 LYS A 247 SITE 5 AC2 21 MET A 248 TYR A 401 HOH A 532 HOH A 660 SITE 6 AC2 21 HOH A 661 SITE 1 AC3 11 TYR B 60 GLY B 62 GLU B 64 TRP B 94 SITE 2 AC3 11 ALA B 96 ILE B 172 TYR B 188 GLN B 192 SITE 3 AC3 11 ASP B 195 GLN B 210 AMP B 402 SITE 1 AC4 20 ASP B 61 GLY B 62 PHE B 63 GLU B 64 SITE 2 AC4 20 HIS B 70 ALA B 72 GLN B 73 LEU B 206 SITE 3 AC4 20 GLY B 207 ASP B 209 HIS B 235 GLY B 236 SITE 4 AC4 20 MET B 237 LEU B 238 LYS B 247 MET B 248 SITE 5 AC4 20 TYR B 401 HOH B 504 HOH B 521 HOH B 670 CRYST1 137.560 46.500 141.350 90.00 93.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007270 0.000000 0.000476 0.00000 SCALE2 0.000000 0.021505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007090 0.00000