HEADER TRANSFERASE 15-AUG-11 3VGL TITLE CRYSTAL STRUCTURE OF A ROK FAMILY GLUCOKINASE FROM STREPTOMYCES TITLE 2 GRISEUS IN COMPLEX WITH GLUCOSE AND AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEUS; SOURCE 3 ORGANISM_TAXID: 455632; SOURCE 4 STRAIN: JCM 4626 / NBRC 13350; SOURCE 5 GENE: GLKA, SGR_5377; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS ROK FAMILY, GLUCOKINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MIYAZONO,N.TABEI,S.MORITA,Y.OHNISHI,S.HORINOUCHI,M.TANOKURA REVDAT 4 08-NOV-23 3VGL 1 HETSYN REVDAT 3 29-JUL-20 3VGL 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 19-JUN-13 3VGL 1 JRNL REVDAT 1 07-DEC-11 3VGL 0 JRNL AUTH K.MIYAZONO,N.TABEI,S.MORITA,Y.OHNISHI,S.HORINOUCHI, JRNL AUTH 2 M.TANOKURA JRNL TITL SUBSTRATE RECOGNITION MECHANISM AND SUBSTRATE-DEPENDENT JRNL TITL 2 CONFORMATIONAL CHANGES OF AN ROK FAMILY GLUCOKINASE FROM JRNL TITL 3 STREPTOMYCES GRISEUS JRNL REF J.BACTERIOL. V. 194 607 2012 JRNL REFN ISSN 0021-9193 JRNL PMID 22101842 JRNL DOI 10.1128/JB.06173-11 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 53724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2353 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3196 ; 1.308 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 5.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;39.536 ;23.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;13.845 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1806 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 0.670 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2389 ; 1.239 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 833 ; 2.093 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 807 ; 3.379 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 313 REMARK 3 RESIDUE RANGE : A 322 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2640 29.8630 19.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0409 REMARK 3 T33: 0.0787 T12: 0.0152 REMARK 3 T13: -0.0467 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2329 L22: 1.5026 REMARK 3 L33: 0.9479 L12: -0.0497 REMARK 3 L13: 0.3302 L23: -0.5406 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0229 S13: -0.0647 REMARK 3 S21: 0.1626 S22: 0.0486 S23: -0.2326 REMARK 3 S31: 0.0241 S32: -0.0702 S33: -0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000095018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 0.75M SODIUM CITRATE, REMARK 280 0.2M NACL, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.86500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.69500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.86500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.69500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.79000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.86500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.69500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.79000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.86500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.73000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 325 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 323 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 104 OD1 REMARK 620 2 ASN A 107 OD1 90.5 REMARK 620 3 GLY A 136 O 111.6 82.9 REMARK 620 4 ALA A 153 O 147.6 122.0 75.4 REMARK 620 5 HOH A 326 O 83.3 170.6 92.9 64.5 REMARK 620 6 HOH A 342 O 90.2 100.2 158.1 84.8 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 157 ND1 REMARK 620 2 CYS A 167 SG 104.0 REMARK 620 3 CYS A 169 SG 107.5 110.2 REMARK 620 4 CYS A 174 SG 120.1 109.6 105.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VGK RELATED DB: PDB REMARK 900 RELATED ID: 3VGM RELATED DB: PDB DBREF 3VGL A 1 313 UNP B1VZT1 B1VZT1_STRGG 1 313 SEQADV 3VGL LEU A 314 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL GLU A 315 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 316 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 317 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 318 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 319 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 320 UNP B1VZT1 EXPRESSION TAG SEQADV 3VGL HIS A 321 UNP B1VZT1 EXPRESSION TAG SEQRES 1 A 321 MET GLY LEU THR ILE GLY VAL ASP ILE GLY GLY THR LYS SEQRES 2 A 321 ILE ALA ALA GLY VAL VAL ASP GLU GLU GLY ARG ILE LEU SEQRES 3 A 321 SER THR PHE LYS VAL ALA THR PRO PRO THR ALA GLU GLY SEQRES 4 A 321 ILE VAL ASP ALA ILE CYS ALA ALA VAL ALA GLY ALA SER SEQRES 5 A 321 GLU GLY HIS ASP VAL GLU ALA VAL GLY ILE GLY ALA ALA SEQRES 6 A 321 GLY TYR VAL ASP ASP LYS ARG ALA THR VAL LEU PHE ALA SEQRES 7 A 321 PRO ASN ILE ASP TRP ARG HIS GLU PRO LEU LYS ASP LYS SEQRES 8 A 321 VAL GLU GLN ARG VAL GLY LEU PRO VAL VAL VAL GLU ASN SEQRES 9 A 321 ASP ALA ASN ALA ALA ALA TRP GLY GLU TYR ARG PHE GLY SEQRES 10 A 321 ALA GLY GLN GLY HIS ASP ASP VAL ILE CYS ILE THR LEU SEQRES 11 A 321 GLY THR GLY LEU GLY GLY GLY ILE ILE ILE GLY ASN LYS SEQRES 12 A 321 LEU ARG ARG GLY ARG PHE GLY VAL ALA ALA GLU PHE GLY SEQRES 13 A 321 HIS ILE ARG VAL VAL PRO ASP GLY LEU LEU CYS GLY CYS SEQRES 14 A 321 GLY SER GLN GLY CYS TRP GLU GLN TYR ALA SER GLY ARG SEQRES 15 A 321 ALA LEU VAL ARG TYR ALA LYS GLN ARG ALA ASN ALA THR SEQRES 16 A 321 PRO GLU ASN ALA ALA VAL LEU LEU GLY LEU GLY ASP GLY SEQRES 17 A 321 SER VAL ASP GLY ILE GLU GLY LYS HIS ILE SER GLU ALA SEQRES 18 A 321 ALA ARG GLN GLY ASP PRO VAL ALA VAL ASP SER PHE ARG SEQRES 19 A 321 GLU LEU ALA ARG TRP ALA GLY ALA GLY LEU ALA ASP LEU SEQRES 20 A 321 ALA SER LEU PHE ASP PRO SER ALA PHE ILE VAL GLY GLY SEQRES 21 A 321 GLY VAL SER ASP GLU GLY GLU LEU VAL LEU ASP PRO ILE SEQRES 22 A 321 ARG LYS SER PHE ARG ARG TRP LEU ILE GLY GLY GLU TRP SEQRES 23 A 321 ARG PRO HIS ALA GLN VAL LEU ALA ALA GLN LEU GLY GLY SEQRES 24 A 321 LYS ALA GLY LEU VAL GLY ALA ALA ASP LEU ALA ARG GLN SEQRES 25 A 321 GLY LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 322 1 HET NA A 323 1 HET BGC A 324 12 HET ANP A 325 27 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 ZN ZN 2+ FORMUL 3 NA NA 1+ FORMUL 4 BGC C6 H12 O6 FORMUL 5 ANP C10 H17 N6 O12 P3 FORMUL 6 HOH *278(H2 O) HELIX 1 1 THR A 36 GLU A 53 1 18 HELIX 2 2 PRO A 87 GLY A 97 1 11 HELIX 3 3 ASP A 105 GLY A 117 1 13 HELIX 4 4 GLU A 154 ILE A 158 5 5 HELIX 5 5 CYS A 174 TYR A 178 5 5 HELIX 6 6 SER A 180 THR A 195 1 16 HELIX 7 7 PRO A 196 ASN A 198 5 3 HELIX 8 8 ALA A 199 LEU A 205 1 7 HELIX 9 9 GLU A 214 GLN A 224 1 11 HELIX 10 10 ASP A 226 ASP A 252 1 27 HELIX 11 11 GLY A 260 GLU A 265 5 6 HELIX 12 12 GLY A 266 LEU A 281 1 16 HELIX 13 13 GLY A 283 ARG A 287 5 5 HELIX 14 14 LEU A 297 GLY A 299 5 3 HELIX 15 15 LYS A 300 GLN A 312 1 13 SHEET 1 A 5 PHE A 29 ALA A 32 0 SHEET 2 A 5 LYS A 13 VAL A 19 -1 N ILE A 14 O VAL A 31 SHEET 3 A 5 LEU A 3 ILE A 9 -1 N ASP A 8 O ALA A 15 SHEET 4 A 5 VAL A 57 ALA A 64 1 O GLY A 63 N VAL A 7 SHEET 5 A 5 VAL A 100 ASN A 104 1 O GLU A 103 N ILE A 62 SHEET 1 B 3 TYR A 67 VAL A 68 0 SHEET 2 B 3 VAL A 75 PHE A 77 -1 O PHE A 77 N TYR A 67 SHEET 3 B 3 ARG A 84 GLU A 86 -1 O GLU A 86 N VAL A 75 SHEET 1 C 5 LYS A 143 LEU A 144 0 SHEET 2 C 5 LEU A 134 ILE A 140 -1 N ILE A 140 O LYS A 143 SHEET 3 C 5 VAL A 125 LEU A 130 -1 N CYS A 127 O GLY A 137 SHEET 4 C 5 ALA A 255 GLY A 259 1 O GLY A 259 N ILE A 128 SHEET 5 C 5 GLN A 291 ALA A 294 1 O LEU A 293 N PHE A 256 LINK OD1 ASN A 104 NA NA A 323 1555 1555 2.35 LINK OD1 ASN A 107 NA NA A 323 1555 1555 2.51 LINK O GLY A 136 NA NA A 323 1555 1555 2.26 LINK O ALA A 153 NA NA A 323 1555 1555 3.13 LINK ND1 HIS A 157 ZN ZN A 322 1555 1555 2.11 LINK SG CYS A 167 ZN ZN A 322 1555 1555 2.33 LINK SG CYS A 169 ZN ZN A 322 1555 1555 2.27 LINK SG CYS A 174 ZN ZN A 322 1555 1555 2.29 LINK NA NA A 323 O HOH A 326 1555 1555 2.42 LINK NA NA A 323 O HOH A 342 1555 1555 2.45 CRYST1 69.580 87.730 125.390 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007975 0.00000