HEADER DNA BINDING PROTEIN 23-AUG-11 3VH6 TITLE CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W/CENP- TITLE 2 S/CENP-X HETEROTETRAMERIC COMPLEX, CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENP-S; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CENP-X; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CENP-T; COMPND 12 CHAIN: T; COMPND 13 FRAGMENT: C-TERMINAL HISTONE FOLD; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: CENP-W; COMPND 18 CHAIN: W; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 12 ORGANISM_COMMON: CHICKEN; SOURCE 13 ORGANISM_TAXID: 9031; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 21 ORGANISM_COMMON: CHICKEN; SOURCE 22 ORGANISM_TAXID: 9031; SOURCE 23 GENE: CENPT; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 29 MOL_ID: 4; SOURCE 30 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 31 ORGANISM_COMMON: CHICKEN; SOURCE 32 ORGANISM_TAXID: 9031; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 36 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 37 EXPRESSION_SYSTEM_PLASMID: PRSFDUET KEYWDS HISTONE FOLD, CHROMOSOME SEGREGATION, DNA BINDING, NUCLEUS, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NISHINO,K.TAKEUCHI,K.E.GASCOIGNE,A.SUZUKI,T.HORI,T.OYAMA, AUTHOR 2 K.MORIKAWA,I.M.CHEESEMAN,T.FUKAGAWA REVDAT 2 08-NOV-23 3VH6 1 SEQADV REVDAT 1 07-MAR-12 3VH6 0 JRNL AUTH T.NISHINO,K.TAKEUCHI,K.E.GASCOIGNE,A.SUZUKI,T.HORI,T.OYAMA, JRNL AUTH 2 K.MORIKAWA,I.M.CHEESEMAN,T.FUKAGAWA JRNL TITL CENP-T-W-S-X FORMS A UNIQUE CENTROMERIC CHROMATIN STRUCTURE JRNL TITL 2 WITH A HISTONE-LIKE FOLD JRNL REF CELL(CAMBRIDGE,MASS.) V. 148 487 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22304917 JRNL DOI 10.1016/J.CELL.2011.11.061 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 19.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3635 - 8.0504 0.94 548 140 0.1859 0.2017 REMARK 3 2 8.0504 - 6.4003 0.99 555 140 0.1782 0.2805 REMARK 3 3 6.4003 - 5.5943 0.99 557 139 0.2872 0.3272 REMARK 3 4 5.5943 - 5.0842 1.00 554 135 0.2389 0.3185 REMARK 3 5 5.0842 - 4.7205 1.00 551 138 0.1918 0.2575 REMARK 3 6 4.7205 - 4.4427 1.00 556 134 0.1762 0.2570 REMARK 3 7 4.4427 - 4.2205 1.00 553 141 0.1883 0.3003 REMARK 3 8 4.2205 - 4.0370 0.01 541 130 0.2128 0.2950 REMARK 3 9 4.0370 - 3.8818 1.00 553 139 0.2022 0.2856 REMARK 3 10 3.8818 - 3.7480 1.00 546 136 0.2017 0.2585 REMARK 3 11 3.7480 - 3.6309 1.00 541 135 0.2359 0.3162 REMARK 3 12 3.6309 - 3.5272 1.00 548 138 0.2786 0.3485 REMARK 3 13 3.5272 - 3.4344 1.00 558 134 0.2912 0.3545 REMARK 3 14 3.4344 - 3.3506 1.00 539 136 0.3398 0.3905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 95.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 115.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2797 REMARK 3 ANGLE : 1.357 3755 REMARK 3 CHIRALITY : 0.087 438 REMARK 3 PLANARITY : 0.005 477 REMARK 3 DIHEDRAL : 18.326 1082 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000095039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9626 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 37.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : 0.72600 REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 5.6% PEG 8000, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 79.25500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 79.25500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 79.25500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 79.25500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 79.25500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, T, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 104 REMARK 465 MET A 105 REMARK 465 GLU A 106 REMARK 465 GLN A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 LYS A 110 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 LYS A 119 REMARK 465 GLY A 120 REMARK 465 ARG A 121 REMARK 465 LYS A 122 REMARK 465 THR A 123 REMARK 465 GLU A 124 REMARK 465 GLU A 125 REMARK 465 ASN A 126 REMARK 465 GLU A 127 REMARK 465 THR A 128 REMARK 465 PRO A 129 REMARK 465 VAL A 130 REMARK 465 THR A 131 REMARK 465 GLU A 132 REMARK 465 SER A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 SER A 136 REMARK 465 ASN A 137 REMARK 465 MET A 138 REMARK 465 ALA A 139 REMARK 465 GLY D 0 REMARK 465 TYR D 1 REMARK 465 GLU D 2 REMARK 465 GLU D 3 REMARK 465 ARG D 4 REMARK 465 GLU D 5 REMARK 465 GLY T 529 REMARK 465 SER T 530 REMARK 465 THR T 531 REMARK 465 ARG T 532 REMARK 465 VAL T 630 REMARK 465 SER T 631 REMARK 465 GLY T 632 REMARK 465 ASN T 633 REMARK 465 LYS T 634 REMARK 465 VAL T 635 REMARK 465 ILE T 636 REMARK 465 PRO T 637 REMARK 465 ALA T 638 REMARK 465 LYS T 639 REMARK 465 GLY W 0 REMARK 465 TYR W 1 REMARK 465 ARG W 2 REMARK 465 ARG W 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 38 CB - CG - CD1 ANGL. DEV. = 18.3 DEGREES REMARK 500 PRO T 552 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE T 628 163.98 175.55 REMARK 500 PRO W 6 58.17 -69.35 REMARK 500 ALA W 25 -133.96 42.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VH5 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE REFERENCES FOR CHAIN A, D, W DO NOT CURRENTLY REMARK 999 EXIST. CHAIN A IS C26A, C28A, C55A MUTANT. DBREF 3VH6 A 0 139 PDB 3VH6 3VH6 0 139 DBREF 3VH6 D 0 80 PDB 3VH6 3VH6 0 80 DBREF 3VH6 T 531 639 UNP F1NPG5 F1NPG5_CHICK 54 162 DBREF 3VH6 W 0 76 PDB 3VH6 3VH6 0 76 SEQADV 3VH6 GLY T 529 UNP F1NPG5 EXPRESSION TAG SEQADV 3VH6 SER T 530 UNP F1NPG5 EXPRESSION TAG SEQADV 3VH6 ALA T 564 UNP F1NPG5 CYS 87 ENGINEERED MUTATION SEQADV 3VH6 ALA T 638 UNP F1NPG5 CYS 161 ENGINEERED MUTATION SEQRES 1 A 140 GLY SER GLU ALA ALA GLY GLY GLU GLN ARG GLU LEU LEU SEQRES 2 A 140 ILE GLN ARG LEU ARG ALA ALA VAL HIS TYR THR THR GLY SEQRES 3 A 140 ALA LEU ALA GLN ASP VAL ALA GLU ASP LYS GLY VAL LEU SEQRES 4 A 140 PHE SER LYS GLN THR VAL ALA ALA ILE SER GLU ILE THR SEQRES 5 A 140 PHE ARG GLN ALA GLU ASN PHE ALA ARG ASP LEU GLU MET SEQRES 6 A 140 PHE ALA ARG HIS ALA LYS ARG SER THR ILE THR SER GLU SEQRES 7 A 140 ASP VAL LYS LEU LEU ALA ARG ARG SER ASN SER LEU LEU SEQRES 8 A 140 LYS TYR ILE THR GLN LYS SER ASP GLU LEU ALA SER SER SEQRES 9 A 140 ASN MET GLU GLN LYS GLU LYS LYS LYS LYS LYS SER SER SEQRES 10 A 140 ALA ALA LYS GLY ARG LYS THR GLU GLU ASN GLU THR PRO SEQRES 11 A 140 VAL THR GLU SER GLU ASP SER ASN MET ALA SEQRES 1 D 81 GLY TYR GLU GLU ARG GLU GLY GLY PHE ARG LYS GLU THR SEQRES 2 D 81 VAL GLU ARG LEU LEU ARG LEU HIS PHE ARG ASP GLY ARG SEQRES 3 D 81 THR ARG VAL ASN GLY ASP ALA LEU LEU LEU MET ALA GLU SEQRES 4 D 81 LEU LEU LYS VAL PHE VAL ARG GLU ALA ALA ALA ARG ALA SEQRES 5 D 81 ALA ARG GLN ALA GLN ALA GLU ASP LEU GLU LYS VAL ASP SEQRES 6 D 81 ILE GLU HIS VAL GLU LYS VAL LEU PRO GLN LEU LEU LEU SEQRES 7 D 81 ASP PHE VAL SEQRES 1 T 111 GLY SER THR ARG GLU PRO GLU ILE ALA SER SER LEU ILE SEQRES 2 T 111 LYS GLN ILE PHE SER HIS TYR VAL LYS THR PRO VAL THR SEQRES 3 T 111 ARG ASP ALA TYR LYS ILE VAL GLU LYS ALA SER GLU ARG SEQRES 4 T 111 TYR PHE LYS GLN ILE SER SER ASP LEU GLU ALA TYR SER SEQRES 5 T 111 GLN HIS ALA GLY ARG LYS THR VAL GLU MET ALA ASP VAL SEQRES 6 T 111 GLU LEU LEU MET ARG ARG GLN GLY LEU VAL THR ASP LYS SEQRES 7 T 111 MET PRO LEU HIS VAL LEU VAL GLU ARG HIS LEU PRO LEU SEQRES 8 T 111 GLU TYR ARG LYS LEU LEU ILE PRO ILE ALA VAL SER GLY SEQRES 9 T 111 ASN LYS VAL ILE PRO ALA LYS SEQRES 1 W 77 GLY TYR ARG ARG THR VAL PRO ARG GLY THR LEU ARG LYS SEQRES 2 W 77 ILE ILE LYS LYS HIS LYS PRO HIS LEU ARG LEU ALA ALA SEQRES 3 W 77 ASN THR ASP LEU LEU VAL HIS LEU SER PHE LEU LEU PHE SEQRES 4 W 77 LEU HIS ARG LEU ALA GLU GLU ALA ARG THR ASN ALA PHE SEQRES 5 W 77 GLU ASN LYS SER LYS ILE ILE LYS PRO GLU HIS THR ILE SEQRES 6 W 77 ALA ALA ALA LYS VAL ILE LEU LYS LYS SER ARG GLY HELIX 1 1 GLY A 6 GLY A 36 1 31 HELIX 2 2 SER A 40 HIS A 68 1 29 HELIX 3 3 THR A 75 ALA A 83 1 9 HELIX 4 4 SER A 86 SER A 102 1 17 HELIX 5 5 ARG D 9 PHE D 21 1 13 HELIX 6 6 ASN D 29 GLU D 58 1 30 HELIX 7 7 ASP D 64 PHE D 79 1 16 HELIX 8 8 ALA T 537 LYS T 550 1 14 HELIX 9 9 THR T 554 GLY T 584 1 31 HELIX 10 10 GLU T 589 GLN T 600 1 12 HELIX 11 11 PRO T 608 LEU T 617 1 10 HELIX 12 12 PRO T 618 LYS T 623 1 6 HELIX 13 13 PRO W 6 LYS W 18 1 13 HELIX 14 14 ASN W 26 ASN W 53 1 28 HELIX 15 15 LYS W 59 SER W 74 1 16 SHEET 1 A 2 LEU A 38 PHE A 39 0 SHEET 2 A 2 LYS D 62 VAL D 63 1 O VAL D 63 N LEU A 38 SHEET 1 B 2 THR A 73 ILE A 74 0 SHEET 2 B 2 ARG D 27 VAL D 28 1 O ARG D 27 N ILE A 74 SHEET 1 C 2 THR T 587 VAL T 588 0 SHEET 2 C 2 ARG W 22 LEU W 23 1 O ARG W 22 N VAL T 588 CRYST1 158.510 158.510 158.510 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006309 0.00000