data_3VHS # _entry.id 3VHS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VHS RCSB RCSB095060 WWPDB D_1000095060 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VHT _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VHS _pdbx_database_status.recvd_initial_deposition_date 2011-09-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, N.' 1 'Wakatsuki, S.' 2 'Kawasaki, M.' 3 # _citation.id primary _citation.title 'A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27062441 _citation.pdbx_database_id_DOI 10.1111/febs.13734 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Suzuki, N.' 1 primary 'Rohaim, A.' 2 primary 'Kato, R.' 3 primary 'Dikic, I.' 4 primary 'Wakatsuki, S.' 5 primary 'Kawasaki, M.' 6 # _cell.entry_id 3VHS _cell.length_a 36.482 _cell.length_b 73.457 _cell.length_c 34.651 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VHS _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATPase WRNIP1' 3243.759 2 ? ? 'UBIQUITIN-BINDING ZINC FINGER DOMAIN (UNP RESIDUES 17-40)' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Werner helicase-interacting protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSPEFQVQCPVCQQMMPAAHINSHLDRCL _entity_poly.pdbx_seq_one_letter_code_can GSPEFQVQCPVCQQMMPAAHINSHLDRCL _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 PHE n 1 6 GLN n 1 7 VAL n 1 8 GLN n 1 9 CYS n 1 10 PRO n 1 11 VAL n 1 12 CYS n 1 13 GLN n 1 14 GLN n 1 15 MET n 1 16 MET n 1 17 PRO n 1 18 ALA n 1 19 ALA n 1 20 HIS n 1 21 ILE n 1 22 ASN n 1 23 SER n 1 24 HIS n 1 25 LEU n 1 26 ASP n 1 27 ARG n 1 28 CYS n 1 29 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'WRNIP1, WHIP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4T-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code WRIP1_HUMAN _struct_ref.pdbx_db_accession Q96S55 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QVQCPVCQQMMPAAHINSHLDRCL _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VHS A 6 ? 29 ? Q96S55 17 ? 40 ? 17 40 2 1 3VHS B 6 ? 29 ? Q96S55 17 ? 40 ? 17 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VHS GLY A 1 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 12 1 1 3VHS SER A 2 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 13 2 1 3VHS PRO A 3 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 14 3 1 3VHS GLU A 4 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 15 4 1 3VHS PHE A 5 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 16 5 2 3VHS GLY B 1 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 12 6 2 3VHS SER B 2 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 13 7 2 3VHS PRO B 3 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 14 8 2 3VHS GLU B 4 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 15 9 2 3VHS PHE B 5 ? UNP Q96S55 ? ? 'EXPRESSION TAG' 16 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3VHS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 31.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '28% PEG 400, 0.1M HEPES, 0.2M calcium chrolide, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2007-12-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3VHS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 3816 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.3 _reflns.B_iso_Wilson_estimate 32.4 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 89.5 _reflns_shell.Rmerge_I_obs 0.384 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 187 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VHS _refine.ls_number_reflns_obs 3605 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.77 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 96.97 _refine.ls_R_factor_obs 0.21526 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21282 _refine.ls_R_factor_R_free 0.26151 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 175 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.918 _refine.B_iso_mean 38.800 _refine.aniso_B[1][1] -0.48 _refine.aniso_B[2][2] 0.96 _refine.aniso_B[3][3] -0.48 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.148 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.437 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 403 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 423 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 23.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.021 ? 412 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.584 1.938 ? 558 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.328 5.000 ? 49 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 48.557 25.238 ? 21 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 17.483 15.000 ? 70 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15.208 15.000 ? 2 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.100 0.200 ? 61 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 320 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.897 1.500 ? 259 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.683 2.000 ? 420 ? 'X-RAY DIFFRACTION' r_scbond_it 2.688 3.000 ? 153 ? 'X-RAY DIFFRACTION' r_scangle_it 4.484 4.500 ? 138 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.901 _refine_ls_shell.d_res_low 1.950 _refine_ls_shell.number_reflns_R_work 247 _refine_ls_shell.R_factor_R_work 0.337 _refine_ls_shell.percent_reflns_obs 90.97 _refine_ls_shell.R_factor_R_free 0.325 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VHS _struct.title 'Crystal structure of UBZ of human WRNIP1' _struct.pdbx_descriptor 'ATPase WRNIP1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VHS _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'ZINC FINGER, UBIQUITIN-BINDING DOMAIN, UBIQUITIN BINDING, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 20 ? LEU A 29 ? HIS A 31 LEU A 40 1 ? 10 HELX_P HELX_P2 2 ALA B 18 ? LEU B 25 ? ALA B 29 LEU B 36 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 B CYS 28 SG ? ? A CYS 39 B CYS 39 1_555 ? ? ? ? ? ? ? 2.027 ? metalc1 metalc ? ? A HIS 24 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 35 A ZN 51 1_555 ? ? ? ? ? ? ? 1.989 ? metalc2 metalc ? ? A HIS 20 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 31 B ZN 51 1_555 ? ? ? ? ? ? ? 2.011 ? metalc3 metalc ? ? B HIS 24 NE2 ? ? ? 1_555 E ZN . ZN ? ? B HIS 35 B ZN 51 1_555 ? ? ? ? ? ? ? 2.078 ? metalc4 metalc ? ? A MET 15 O ? ? ? 1_555 F NA . NA ? ? A MET 26 B NA 52 1_555 ? ? ? ? ? ? ? 2.090 ? metalc5 metalc ? ? B CYS 12 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 23 B ZN 51 1_555 ? ? ? ? ? ? ? 2.203 ? metalc6 metalc ? ? B CYS 9 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 20 B ZN 51 1_555 ? ? ? ? ? ? ? 2.247 ? metalc7 metalc ? ? A LEU 29 O ? ? ? 1_555 D NA . NA ? ? A LEU 40 A NA 52 1_555 ? ? ? ? ? ? ? 2.276 ? metalc8 metalc ? ? A ASP 26 O ? ? ? 1_555 D NA . NA ? ? A ASP 37 A NA 52 1_555 ? ? ? ? ? ? ? 2.309 ? metalc9 metalc ? ? A CYS 9 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 20 A ZN 51 1_555 ? ? ? ? ? ? ? 2.332 ? metalc10 metalc ? ? A CYS 12 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 23 A ZN 51 1_555 ? ? ? ? ? ? ? 2.352 ? metalc11 metalc ? ? B ASP 26 OD2 ? ? ? 1_555 F NA . NA ? ? B ASP 37 B NA 52 1_555 ? ? ? ? ? ? ? 2.471 ? metalc12 metalc ? ? B ASP 26 OD1 ? ? ? 1_555 F NA . NA ? ? B ASP 37 B NA 52 1_555 ? ? ? ? ? ? ? 2.735 ? metalc13 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 52 B HOH 62 1_555 ? ? ? ? ? ? ? 1.929 ? metalc14 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 51 A HOH 61 1_555 ? ? ? ? ? ? ? 2.279 ? metalc15 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 52 B HOH 64 1_555 ? ? ? ? ? ? ? 2.282 ? metalc16 metalc ? ? F NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 52 A HOH 69 1_555 ? ? ? ? ? ? ? 2.507 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 6 ? GLN A 8 ? GLN A 17 GLN A 19 A 2 MET A 15 ? PRO A 17 ? MET A 26 PRO A 28 B 1 GLN B 6 ? GLN B 8 ? GLN B 17 GLN B 19 B 2 MET B 15 ? PRO B 17 ? MET B 26 PRO B 28 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 7 ? N VAL A 18 O MET A 16 ? O MET A 27 B 1 2 N VAL B 7 ? N VAL B 18 O MET B 16 ? O MET B 27 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 51' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 52' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 51' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA B 52' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 9 ? CYS A 20 . ? 1_555 ? 2 AC1 4 CYS A 12 ? CYS A 23 . ? 1_555 ? 3 AC1 4 HIS A 24 ? HIS A 35 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 61 . ? 1_555 ? 5 AC2 6 ASP A 26 ? ASP A 37 . ? 1_555 ? 6 AC2 6 ASP A 26 ? ASP A 37 . ? 3_554 ? 7 AC2 6 LEU A 29 ? LEU A 40 . ? 1_555 ? 8 AC2 6 LEU A 29 ? LEU A 40 . ? 3_554 ? 9 AC2 6 HOH G . ? HOH A 72 . ? 3_554 ? 10 AC2 6 HOH G . ? HOH A 72 . ? 1_555 ? 11 AC3 4 HIS A 20 ? HIS A 31 . ? 1_555 ? 12 AC3 4 CYS B 9 ? CYS B 20 . ? 1_555 ? 13 AC3 4 CYS B 12 ? CYS B 23 . ? 1_555 ? 14 AC3 4 HIS B 24 ? HIS B 35 . ? 1_555 ? 15 AC4 5 MET A 15 ? MET A 26 . ? 1_555 ? 16 AC4 5 HOH G . ? HOH A 69 . ? 1_555 ? 17 AC4 5 ASP B 26 ? ASP B 37 . ? 1_555 ? 18 AC4 5 HOH H . ? HOH B 62 . ? 1_555 ? 19 AC4 5 HOH H . ? HOH B 64 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VHS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VHS _atom_sites.fract_transf_matrix[1][1] 0.027411 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013613 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028859 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 12 ? ? ? A . n A 1 2 SER 2 13 ? ? ? A . n A 1 3 PRO 3 14 ? ? ? A . n A 1 4 GLU 4 15 ? ? ? A . n A 1 5 PHE 5 16 16 PHE PHE A . n A 1 6 GLN 6 17 17 GLN GLN A . n A 1 7 VAL 7 18 18 VAL VAL A . n A 1 8 GLN 8 19 19 GLN GLN A . n A 1 9 CYS 9 20 20 CYS CYS A . n A 1 10 PRO 10 21 21 PRO PRO A . n A 1 11 VAL 11 22 22 VAL VAL A . n A 1 12 CYS 12 23 23 CYS CYS A . n A 1 13 GLN 13 24 24 GLN GLN A . n A 1 14 GLN 14 25 25 GLN GLN A . n A 1 15 MET 15 26 26 MET MET A . n A 1 16 MET 16 27 27 MET MET A . n A 1 17 PRO 17 28 28 PRO PRO A . n A 1 18 ALA 18 29 29 ALA ALA A . n A 1 19 ALA 19 30 30 ALA ALA A . n A 1 20 HIS 20 31 31 HIS HIS A . n A 1 21 ILE 21 32 32 ILE ILE A . n A 1 22 ASN 22 33 33 ASN ASN A . n A 1 23 SER 23 34 34 SER SER A . n A 1 24 HIS 24 35 35 HIS HIS A . n A 1 25 LEU 25 36 36 LEU LEU A . n A 1 26 ASP 26 37 37 ASP ASP A . n A 1 27 ARG 27 38 38 ARG ARG A . n A 1 28 CYS 28 39 39 CYS CYS A . n A 1 29 LEU 29 40 40 LEU LEU A . n B 1 1 GLY 1 12 ? ? ? B . n B 1 2 SER 2 13 ? ? ? B . n B 1 3 PRO 3 14 ? ? ? B . n B 1 4 GLU 4 15 15 GLU GLU B . n B 1 5 PHE 5 16 16 PHE PHE B . n B 1 6 GLN 6 17 17 GLN GLN B . n B 1 7 VAL 7 18 18 VAL VAL B . n B 1 8 GLN 8 19 19 GLN GLN B . n B 1 9 CYS 9 20 20 CYS CYS B . n B 1 10 PRO 10 21 21 PRO PRO B . n B 1 11 VAL 11 22 22 VAL VAL B . n B 1 12 CYS 12 23 23 CYS CYS B . n B 1 13 GLN 13 24 24 GLN GLN B . n B 1 14 GLN 14 25 25 GLN GLN B . n B 1 15 MET 15 26 26 MET MET B . n B 1 16 MET 16 27 27 MET MET B . n B 1 17 PRO 17 28 28 PRO PRO B . n B 1 18 ALA 18 29 29 ALA ALA B . n B 1 19 ALA 19 30 30 ALA ALA B . n B 1 20 HIS 20 31 31 HIS HIS B . n B 1 21 ILE 21 32 32 ILE ILE B . n B 1 22 ASN 22 33 33 ASN ASN B . n B 1 23 SER 23 34 34 SER SER B . n B 1 24 HIS 24 35 35 HIS HIS B . n B 1 25 LEU 25 36 36 LEU LEU B . n B 1 26 ASP 26 37 37 ASP ASP B . n B 1 27 ARG 27 38 38 ARG ARG B . n B 1 28 CYS 28 39 39 CYS CYS B . n B 1 29 LEU 29 40 40 LEU LEU B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1140 ? 1 MORE -92 ? 1 'SSA (A^2)' 3880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 52 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 24 ? A HIS 35 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 SG ? A CYS 9 ? A CYS 20 ? 1_555 110.2 ? 2 NE2 ? A HIS 24 ? A HIS 35 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 SG ? A CYS 12 ? A CYS 23 ? 1_555 107.8 ? 3 SG ? A CYS 9 ? A CYS 20 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 SG ? A CYS 12 ? A CYS 23 ? 1_555 109.4 ? 4 NE2 ? A HIS 24 ? A HIS 35 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 O ? G HOH . ? A HOH 61 ? 1_555 108.3 ? 5 SG ? A CYS 9 ? A CYS 20 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 O ? G HOH . ? A HOH 61 ? 1_555 108.4 ? 6 SG ? A CYS 12 ? A CYS 23 ? 1_555 ZN ? C ZN . ? A ZN 51 ? 1_555 O ? G HOH . ? A HOH 61 ? 1_555 112.8 ? 7 NE2 ? A HIS 20 ? A HIS 31 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 NE2 ? B HIS 24 ? B HIS 35 ? 1_555 101.7 ? 8 NE2 ? A HIS 20 ? A HIS 31 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 SG ? B CYS 12 ? B CYS 23 ? 1_555 110.5 ? 9 NE2 ? B HIS 24 ? B HIS 35 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 SG ? B CYS 12 ? B CYS 23 ? 1_555 117.5 ? 10 NE2 ? A HIS 20 ? A HIS 31 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 SG ? B CYS 9 ? B CYS 20 ? 1_555 111.4 ? 11 NE2 ? B HIS 24 ? B HIS 35 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 SG ? B CYS 9 ? B CYS 20 ? 1_555 100.1 ? 12 SG ? B CYS 12 ? B CYS 23 ? 1_555 ZN ? E ZN . ? B ZN 51 ? 1_555 SG ? B CYS 9 ? B CYS 20 ? 1_555 114.6 ? 13 O ? A MET 15 ? A MET 26 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 OD2 ? B ASP 26 ? B ASP 37 ? 1_555 86.1 ? 14 O ? A MET 15 ? A MET 26 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 OD1 ? B ASP 26 ? B ASP 37 ? 1_555 109.1 ? 15 OD2 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 OD1 ? B ASP 26 ? B ASP 37 ? 1_555 48.4 ? 16 O ? A MET 15 ? A MET 26 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 62 ? 1_555 93.5 ? 17 OD2 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 62 ? 1_555 105.9 ? 18 OD1 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 62 ? 1_555 62.9 ? 19 O ? A MET 15 ? A MET 26 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 64 ? 1_555 117.2 ? 20 OD2 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 64 ? 1_555 76.0 ? 21 OD1 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 64 ? 1_555 102.1 ? 22 O ? H HOH . ? B HOH 62 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? H HOH . ? B HOH 64 ? 1_555 149.3 ? 23 O ? A MET 15 ? A MET 26 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? G HOH . ? A HOH 69 ? 1_555 84.2 ? 24 OD2 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? G HOH . ? A HOH 69 ? 1_555 152.0 ? 25 OD1 ? B ASP 26 ? B ASP 37 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? G HOH . ? A HOH 69 ? 1_555 158.8 ? 26 O ? H HOH . ? B HOH 62 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? G HOH . ? A HOH 69 ? 1_555 100.9 ? 27 O ? H HOH . ? B HOH 64 ? 1_555 NA ? F NA . ? B NA 52 ? 1_555 O ? G HOH . ? A HOH 69 ? 1_555 85.2 ? 28 O ? A LEU 29 ? A LEU 40 ? 1_555 NA ? D NA . ? A NA 52 ? 1_555 O ? A ASP 26 ? A ASP 37 ? 1_555 81.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-10 2 'Structure model' 1 1 2016-06-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 24 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 82.53 _pdbx_validate_torsion.psi -2.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 12 ? A GLY 1 2 1 Y 1 A SER 13 ? A SER 2 3 1 Y 1 A PRO 14 ? A PRO 3 4 1 Y 1 A GLU 15 ? A GLU 4 5 1 Y 1 B GLY 12 ? B GLY 1 6 1 Y 1 B SER 13 ? B SER 2 7 1 Y 1 B PRO 14 ? B PRO 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'SODIUM ION' NA 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 51 51 ZN ZN A . D 3 NA 1 52 52 NA NA A . E 2 ZN 1 51 51 ZN ZN B . F 3 NA 1 52 52 NA NA B . G 4 HOH 1 61 61 HOH HOH A . G 4 HOH 2 62 64 HOH HOH A . G 4 HOH 3 63 63 HOH HOH A . G 4 HOH 4 64 64 HOH HOH A . G 4 HOH 5 65 65 HOH HOH A . G 4 HOH 6 66 66 HOH HOH A . G 4 HOH 7 67 67 HOH HOH A . G 4 HOH 8 68 68 HOH HOH A . G 4 HOH 9 69 69 HOH HOH A . G 4 HOH 10 70 70 HOH HOH A . G 4 HOH 11 71 71 HOH HOH A . G 4 HOH 12 72 72 HOH HOH A . H 4 HOH 1 61 61 HOH HOH B . H 4 HOH 2 62 62 HOH HOH B . H 4 HOH 3 63 63 HOH HOH B . H 4 HOH 4 64 62 HOH HOH B . #