data_3VI0 # _entry.id 3VI0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VI0 pdb_00003vi0 10.2210/pdb3vi0/pdb RCSB RCSB095068 ? ? WWPDB D_1000095068 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3vhz _pdbx_database_related.details 'the trans isomer of the same protein' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VI0 _pdbx_database_status.recvd_initial_deposition_date 2011-09-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kouyama, T.' 1 'Zhang, J.' 2 # _citation.id primary _citation.title 'Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin' _citation.journal_abbrev Proteins _citation.journal_volume 80 _citation.page_first 2384 _citation.page_last 2396 _citation.year 2012 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22641602 _citation.pdbx_database_id_DOI 10.1002/prot.24124 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, J.' 1 ? primary 'Yamazaki, Y.' 2 ? primary 'Hikake, M.' 3 ? primary 'Murakami, M.' 4 ? primary 'Ihara, K.' 5 ? primary 'Kouyama, T.' 6 ? # _cell.entry_id 3VI0 _cell.length_a 102.3 _cell.length_b 102.3 _cell.length_c 112.3 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VI0 _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Bacteriorhodopsin 28228.006 1 ? L93A ? ? 2 branched man '3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose' 584.501 1 ? ? ? ? 3 non-polymer syn RETINAL 284.436 1 ? ? ? ? 4 non-polymer man 'octyl 1-thio-beta-D-glucopyranoside' 308.434 1 ? ? ? ? 5 non-polymer syn 2,3-DI-PHYTANYL-GLYCEROL 653.157 1 ? ? ? ? 6 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BR, Bacterioopsin, BO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLALLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD ; _entity_poly.pdbx_seq_one_letter_code_can ;MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLALLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 GLU n 1 4 LEU n 1 5 LEU n 1 6 PRO n 1 7 THR n 1 8 ALA n 1 9 VAL n 1 10 GLU n 1 11 GLY n 1 12 VAL n 1 13 SER n 1 14 GLN n 1 15 ALA n 1 16 GLN n 1 17 ILE n 1 18 THR n 1 19 GLY n 1 20 ARG n 1 21 PRO n 1 22 GLU n 1 23 TRP n 1 24 ILE n 1 25 TRP n 1 26 LEU n 1 27 ALA n 1 28 LEU n 1 29 GLY n 1 30 THR n 1 31 ALA n 1 32 LEU n 1 33 MET n 1 34 GLY n 1 35 LEU n 1 36 GLY n 1 37 THR n 1 38 LEU n 1 39 TYR n 1 40 PHE n 1 41 LEU n 1 42 VAL n 1 43 LYS n 1 44 GLY n 1 45 MET n 1 46 GLY n 1 47 VAL n 1 48 SER n 1 49 ASP n 1 50 PRO n 1 51 ASP n 1 52 ALA n 1 53 LYS n 1 54 LYS n 1 55 PHE n 1 56 TYR n 1 57 ALA n 1 58 ILE n 1 59 THR n 1 60 THR n 1 61 LEU n 1 62 VAL n 1 63 PRO n 1 64 ALA n 1 65 ILE n 1 66 ALA n 1 67 PHE n 1 68 THR n 1 69 MET n 1 70 TYR n 1 71 LEU n 1 72 SER n 1 73 MET n 1 74 LEU n 1 75 LEU n 1 76 GLY n 1 77 TYR n 1 78 GLY n 1 79 LEU n 1 80 THR n 1 81 MET n 1 82 VAL n 1 83 PRO n 1 84 PHE n 1 85 GLY n 1 86 GLY n 1 87 GLU n 1 88 GLN n 1 89 ASN n 1 90 PRO n 1 91 ILE n 1 92 TYR n 1 93 TRP n 1 94 ALA n 1 95 ARG n 1 96 TYR n 1 97 ALA n 1 98 ASP n 1 99 TRP n 1 100 LEU n 1 101 PHE n 1 102 THR n 1 103 THR n 1 104 PRO n 1 105 LEU n 1 106 ALA n 1 107 LEU n 1 108 LEU n 1 109 ASP n 1 110 LEU n 1 111 ALA n 1 112 LEU n 1 113 LEU n 1 114 VAL n 1 115 ASP n 1 116 ALA n 1 117 ASP n 1 118 GLN n 1 119 GLY n 1 120 THR n 1 121 ILE n 1 122 LEU n 1 123 ALA n 1 124 LEU n 1 125 VAL n 1 126 GLY n 1 127 ALA n 1 128 ASP n 1 129 GLY n 1 130 ILE n 1 131 MET n 1 132 ILE n 1 133 GLY n 1 134 THR n 1 135 GLY n 1 136 LEU n 1 137 VAL n 1 138 GLY n 1 139 ALA n 1 140 LEU n 1 141 THR n 1 142 LYS n 1 143 VAL n 1 144 TYR n 1 145 SER n 1 146 TYR n 1 147 ARG n 1 148 PHE n 1 149 VAL n 1 150 TRP n 1 151 TRP n 1 152 ALA n 1 153 ILE n 1 154 SER n 1 155 THR n 1 156 ALA n 1 157 ALA n 1 158 MET n 1 159 LEU n 1 160 TYR n 1 161 ILE n 1 162 LEU n 1 163 TYR n 1 164 VAL n 1 165 LEU n 1 166 PHE n 1 167 PHE n 1 168 GLY n 1 169 PHE n 1 170 THR n 1 171 SER n 1 172 LYS n 1 173 ALA n 1 174 GLU n 1 175 SER n 1 176 MET n 1 177 ARG n 1 178 PRO n 1 179 GLU n 1 180 VAL n 1 181 ALA n 1 182 SER n 1 183 THR n 1 184 PHE n 1 185 LYS n 1 186 VAL n 1 187 LEU n 1 188 ARG n 1 189 ASN n 1 190 VAL n 1 191 THR n 1 192 VAL n 1 193 VAL n 1 194 LEU n 1 195 TRP n 1 196 SER n 1 197 ALA n 1 198 TYR n 1 199 PRO n 1 200 VAL n 1 201 VAL n 1 202 TRP n 1 203 LEU n 1 204 ILE n 1 205 GLY n 1 206 SER n 1 207 GLU n 1 208 GLY n 1 209 ALA n 1 210 GLY n 1 211 ILE n 1 212 VAL n 1 213 PRO n 1 214 LEU n 1 215 ASN n 1 216 ILE n 1 217 GLU n 1 218 THR n 1 219 LEU n 1 220 LEU n 1 221 PHE n 1 222 MET n 1 223 VAL n 1 224 LEU n 1 225 ASP n 1 226 VAL n 1 227 SER n 1 228 ALA n 1 229 LYS n 1 230 VAL n 1 231 GLY n 1 232 PHE n 1 233 GLY n 1 234 LEU n 1 235 ILE n 1 236 LEU n 1 237 LEU n 1 238 ARG n 1 239 SER n 1 240 ARG n 1 241 ALA n 1 242 ILE n 1 243 PHE n 1 244 GLY n 1 245 GLU n 1 246 ALA n 1 247 GLU n 1 248 ALA n 1 249 PRO n 1 250 GLU n 1 251 PRO n 1 252 SER n 1 253 ALA n 1 254 GLY n 1 255 ASP n 1 256 GLY n 1 257 ALA n 1 258 ALA n 1 259 ALA n 1 260 THR n 1 261 SER n 1 262 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bop, VNG_1467G' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 700922 / JCM 11081 / NRC-1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Halobacterium _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 64091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name halobacterium _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2239 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain MPK409 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUC18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BACR_HALSA _struct_ref.pdbx_db_accession P02945 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VI0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02945 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -12 _struct_ref_seq.pdbx_auth_seq_align_end 249 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3VI0 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 106 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P02945 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 106 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 93 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 L2P non-polymer . 2,3-DI-PHYTANYL-GLYCEROL '1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL' 'C43 H88 O3' 653.157 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SGA 'D-saccharide, beta linking' n 3-O-sulfo-beta-D-galactopyranose 'O3-SULFONYLGALACTOSE; 3-O-sulfo-beta-D-galactose; 3-O-sulfo-D-galactose; 3-O-sulfo-galactose' 'C6 H12 O9 S' 260.219 SOG D-saccharide . 'octyl 1-thio-beta-D-glucopyranoside' ;2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL; 1-S-OCTYL-BETA-D-THIOGLUCOSIDE; octyl 1-thio-beta-D-glucoside; octyl 1-thio-D-glucoside; octyl 1-thio-glucoside ; 'C14 H28 O5 S' 308.434 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VI0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 59.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details 'membrane fusion method, 2.3 M ammonium sulfate, 0.05M Na-citrate, pH 5.2, VAPOR DIFFUSION, SITTING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-06-01 _diffrn_detector.details 'Si (111) double crystal monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111) double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3VI0 _reflns.observed_criterion_sigma_I 2.5 _reflns.observed_criterion_sigma_F 2.5 _reflns.d_resolution_low 47.4 _reflns.d_resolution_high 2.2 _reflns.number_obs 18113 _reflns.number_all 18163 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value 0.117 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.B_iso_Wilson_estimate 37.3 _reflns.pdbx_redundancy 14.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3VI0 _refine.ls_number_reflns_obs 15136 _refine.ls_number_reflns_all 15938 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.288 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.288 _refine.ls_R_factor_R_free 0.3481 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5000 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 39.5801 _refine.aniso_B[1][1] -7.4330 _refine.aniso_B[2][2] -7.4330 _refine.aniso_B[3][3] 14.8670 _refine.aniso_B[1][2] -7.1850 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE DIFFRACTION AMPLITUDE FROM THE O INTERMEDIATE WAS EVALUATED FROM DIFFRACTION DATA OF A MIXTURE STATE OF O AND THE UNPHOTOLYZED STATE. ; _refine.pdbx_starting_model 'pdb entry 3vhz' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3VI0 _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.52 _refine_analyze.Luzzati_sigma_a_free 0.40 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1753 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 123 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1905 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.007906 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.21360 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 18.15021 ? ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 0.84486 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.3 _refine_ls_shell.d_res_low 2.38 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.393 _refine_ls_shell.percent_reflns_obs 90.28 _refine_ls_shell.R_factor_R_free 0.3987 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1412 _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 syn.param ? 'X-RAY DIFFRACTION' 4 otg.param ? 'X-RAY DIFFRACTION' 5 lp2.param ? 'X-RAY DIFFRACTION' 6 lp3.param ? 'X-RAY DIFFRACTION' 7 lp4.param ? 'X-RAY DIFFRACTION' 8 lp5.param ? 'X-RAY DIFFRACTION' 9 glc.param ? 'X-RAY DIFFRACTION' 10 man.param ? 'X-RAY DIFFRACTION' 11 sga.param ? # _struct.entry_id 3VI0 _struct.title 'Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VI0 _struct_keywords.pdbx_keywords 'PROTON TRANSPORT' _struct_keywords.text 'retinal protein, seven transmembrane helices, light-driven proton pump, cell membrane, PROTON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 22 ? MET A 45 ? GLU A 9 MET A 32 1 ? 24 HELX_P HELX_P2 2 ASP A 49 ? LEU A 75 ? ASP A 36 LEU A 62 1 ? 27 HELX_P HELX_P3 3 TRP A 93 ? ASP A 115 ? TRP A 80 ASP A 102 1 ? 23 HELX_P HELX_P4 4 ASP A 117 ? LEU A 140 ? ASP A 104 LEU A 127 1 ? 24 HELX_P HELX_P5 5 VAL A 143 ? PHE A 167 ? VAL A 130 PHE A 154 1 ? 25 HELX_P HELX_P6 6 PHE A 167 ? GLU A 174 ? PHE A 154 GLU A 161 1 ? 8 HELX_P HELX_P7 7 ARG A 177 ? GLY A 205 ? ARG A 164 GLY A 192 1 ? 29 HELX_P HELX_P8 8 PRO A 213 ? ARG A 238 ? PRO A 200 ARG A 225 1 ? 26 HELX_P HELX_P9 9 SER A 239 ? PHE A 243 ? SER A 226 PHE A 230 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A LYS 229 NZ ? ? ? 1_555 C RET . C15 ? ? A LYS 216 A RET 301 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale2 covale one ? E L2P . O3 ? ? ? 1_555 B GLC . C1 ? ? A L2P 303 B GLC 1 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale3 covale both ? B GLC . O2 ? ? ? 1_555 B MAN . C1 ? ? B GLC 1 B MAN 2 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale4 covale both ? B MAN . O6 ? ? ? 1_555 B SGA . C1 ? ? B MAN 2 B SGA 3 1_555 ? ? ? ? ? ? ? 1.437 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 80 ? PRO A 83 ? THR A 67 PRO A 70 A 2 GLN A 88 ? ILE A 91 ? GLN A 75 ILE A 78 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 82 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 69 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 89 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 76 # _database_PDB_matrix.entry_id 3VI0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VI0 _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0.005644 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011287 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008905 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 LEU 2 -11 ? ? ? A . n A 1 3 GLU 3 -10 ? ? ? A . n A 1 4 LEU 4 -9 ? ? ? A . n A 1 5 LEU 5 -8 ? ? ? A . n A 1 6 PRO 6 -7 ? ? ? A . n A 1 7 THR 7 -6 ? ? ? A . n A 1 8 ALA 8 -5 ? ? ? A . n A 1 9 VAL 9 -4 ? ? ? A . n A 1 10 GLU 10 -3 ? ? ? A . n A 1 11 GLY 11 -2 ? ? ? A . n A 1 12 VAL 12 -1 ? ? ? A . n A 1 13 SER 13 0 ? ? ? A . n A 1 14 GLN 14 1 ? ? ? A . n A 1 15 ALA 15 2 ? ? ? A . n A 1 16 GLN 16 3 ? ? ? A . n A 1 17 ILE 17 4 ? ? ? A . n A 1 18 THR 18 5 5 THR THR A . n A 1 19 GLY 19 6 6 GLY GLY A . n A 1 20 ARG 20 7 7 ARG ARG A . n A 1 21 PRO 21 8 8 PRO PRO A . n A 1 22 GLU 22 9 9 GLU GLU A . n A 1 23 TRP 23 10 10 TRP TRP A . n A 1 24 ILE 24 11 11 ILE ILE A . n A 1 25 TRP 25 12 12 TRP TRP A . n A 1 26 LEU 26 13 13 LEU LEU A . n A 1 27 ALA 27 14 14 ALA ALA A . n A 1 28 LEU 28 15 15 LEU LEU A . n A 1 29 GLY 29 16 16 GLY GLY A . n A 1 30 THR 30 17 17 THR THR A . n A 1 31 ALA 31 18 18 ALA ALA A . n A 1 32 LEU 32 19 19 LEU LEU A . n A 1 33 MET 33 20 20 MET MET A . n A 1 34 GLY 34 21 21 GLY GLY A . n A 1 35 LEU 35 22 22 LEU LEU A . n A 1 36 GLY 36 23 23 GLY GLY A . n A 1 37 THR 37 24 24 THR THR A . n A 1 38 LEU 38 25 25 LEU LEU A . n A 1 39 TYR 39 26 26 TYR TYR A . n A 1 40 PHE 40 27 27 PHE PHE A . n A 1 41 LEU 41 28 28 LEU LEU A . n A 1 42 VAL 42 29 29 VAL VAL A . n A 1 43 LYS 43 30 30 LYS LYS A . n A 1 44 GLY 44 31 31 GLY GLY A . n A 1 45 MET 45 32 32 MET MET A . n A 1 46 GLY 46 33 33 GLY GLY A . n A 1 47 VAL 47 34 34 VAL VAL A . n A 1 48 SER 48 35 35 SER SER A . n A 1 49 ASP 49 36 36 ASP ASP A . n A 1 50 PRO 50 37 37 PRO PRO A . n A 1 51 ASP 51 38 38 ASP ASP A . n A 1 52 ALA 52 39 39 ALA ALA A . n A 1 53 LYS 53 40 40 LYS LYS A . n A 1 54 LYS 54 41 41 LYS LYS A . n A 1 55 PHE 55 42 42 PHE PHE A . n A 1 56 TYR 56 43 43 TYR TYR A . n A 1 57 ALA 57 44 44 ALA ALA A . n A 1 58 ILE 58 45 45 ILE ILE A . n A 1 59 THR 59 46 46 THR THR A . n A 1 60 THR 60 47 47 THR THR A . n A 1 61 LEU 61 48 48 LEU LEU A . n A 1 62 VAL 62 49 49 VAL VAL A . n A 1 63 PRO 63 50 50 PRO PRO A . n A 1 64 ALA 64 51 51 ALA ALA A . n A 1 65 ILE 65 52 52 ILE ILE A . n A 1 66 ALA 66 53 53 ALA ALA A . n A 1 67 PHE 67 54 54 PHE PHE A . n A 1 68 THR 68 55 55 THR THR A . n A 1 69 MET 69 56 56 MET MET A . n A 1 70 TYR 70 57 57 TYR TYR A . n A 1 71 LEU 71 58 58 LEU LEU A . n A 1 72 SER 72 59 59 SER SER A . n A 1 73 MET 73 60 60 MET MET A . n A 1 74 LEU 74 61 61 LEU LEU A . n A 1 75 LEU 75 62 62 LEU LEU A . n A 1 76 GLY 76 63 63 GLY GLY A . n A 1 77 TYR 77 64 64 TYR TYR A . n A 1 78 GLY 78 65 65 GLY GLY A . n A 1 79 LEU 79 66 66 LEU LEU A . n A 1 80 THR 80 67 67 THR THR A . n A 1 81 MET 81 68 68 MET MET A . n A 1 82 VAL 82 69 69 VAL VAL A . n A 1 83 PRO 83 70 70 PRO PRO A . n A 1 84 PHE 84 71 71 PHE PHE A . n A 1 85 GLY 85 72 72 GLY GLY A . n A 1 86 GLY 86 73 73 GLY GLY A . n A 1 87 GLU 87 74 74 GLU GLU A . n A 1 88 GLN 88 75 75 GLN GLN A . n A 1 89 ASN 89 76 76 ASN ASN A . n A 1 90 PRO 90 77 77 PRO PRO A . n A 1 91 ILE 91 78 78 ILE ILE A . n A 1 92 TYR 92 79 79 TYR TYR A . n A 1 93 TRP 93 80 80 TRP TRP A . n A 1 94 ALA 94 81 81 ALA ALA A . n A 1 95 ARG 95 82 82 ARG ARG A . n A 1 96 TYR 96 83 83 TYR TYR A . n A 1 97 ALA 97 84 84 ALA ALA A . n A 1 98 ASP 98 85 85 ASP ASP A . n A 1 99 TRP 99 86 86 TRP TRP A . n A 1 100 LEU 100 87 87 LEU LEU A . n A 1 101 PHE 101 88 88 PHE PHE A . n A 1 102 THR 102 89 89 THR THR A . n A 1 103 THR 103 90 90 THR THR A . n A 1 104 PRO 104 91 91 PRO PRO A . n A 1 105 LEU 105 92 92 LEU LEU A . n A 1 106 ALA 106 93 93 ALA ALA A . n A 1 107 LEU 107 94 94 LEU LEU A . n A 1 108 LEU 108 95 95 LEU LEU A . n A 1 109 ASP 109 96 96 ASP ASP A . n A 1 110 LEU 110 97 97 LEU LEU A . n A 1 111 ALA 111 98 98 ALA ALA A . n A 1 112 LEU 112 99 99 LEU LEU A . n A 1 113 LEU 113 100 100 LEU LEU A . n A 1 114 VAL 114 101 101 VAL VAL A . n A 1 115 ASP 115 102 102 ASP ASP A . n A 1 116 ALA 116 103 103 ALA ALA A . n A 1 117 ASP 117 104 104 ASP ASP A . n A 1 118 GLN 118 105 105 GLN GLN A . n A 1 119 GLY 119 106 106 GLY GLY A . n A 1 120 THR 120 107 107 THR THR A . n A 1 121 ILE 121 108 108 ILE ILE A . n A 1 122 LEU 122 109 109 LEU LEU A . n A 1 123 ALA 123 110 110 ALA ALA A . n A 1 124 LEU 124 111 111 LEU LEU A . n A 1 125 VAL 125 112 112 VAL VAL A . n A 1 126 GLY 126 113 113 GLY GLY A . n A 1 127 ALA 127 114 114 ALA ALA A . n A 1 128 ASP 128 115 115 ASP ASP A . n A 1 129 GLY 129 116 116 GLY GLY A . n A 1 130 ILE 130 117 117 ILE ILE A . n A 1 131 MET 131 118 118 MET MET A . n A 1 132 ILE 132 119 119 ILE ILE A . n A 1 133 GLY 133 120 120 GLY GLY A . n A 1 134 THR 134 121 121 THR THR A . n A 1 135 GLY 135 122 122 GLY GLY A . n A 1 136 LEU 136 123 123 LEU LEU A . n A 1 137 VAL 137 124 124 VAL VAL A . n A 1 138 GLY 138 125 125 GLY GLY A . n A 1 139 ALA 139 126 126 ALA ALA A . n A 1 140 LEU 140 127 127 LEU LEU A . n A 1 141 THR 141 128 128 THR THR A . n A 1 142 LYS 142 129 129 LYS LYS A . n A 1 143 VAL 143 130 130 VAL VAL A . n A 1 144 TYR 144 131 131 TYR TYR A . n A 1 145 SER 145 132 132 SER SER A . n A 1 146 TYR 146 133 133 TYR TYR A . n A 1 147 ARG 147 134 134 ARG ARG A . n A 1 148 PHE 148 135 135 PHE PHE A . n A 1 149 VAL 149 136 136 VAL VAL A . n A 1 150 TRP 150 137 137 TRP TRP A . n A 1 151 TRP 151 138 138 TRP TRP A . n A 1 152 ALA 152 139 139 ALA ALA A . n A 1 153 ILE 153 140 140 ILE ILE A . n A 1 154 SER 154 141 141 SER SER A . n A 1 155 THR 155 142 142 THR THR A . n A 1 156 ALA 156 143 143 ALA ALA A . n A 1 157 ALA 157 144 144 ALA ALA A . n A 1 158 MET 158 145 145 MET MET A . n A 1 159 LEU 159 146 146 LEU LEU A . n A 1 160 TYR 160 147 147 TYR TYR A . n A 1 161 ILE 161 148 148 ILE ILE A . n A 1 162 LEU 162 149 149 LEU LEU A . n A 1 163 TYR 163 150 150 TYR TYR A . n A 1 164 VAL 164 151 151 VAL VAL A . n A 1 165 LEU 165 152 152 LEU LEU A . n A 1 166 PHE 166 153 153 PHE PHE A . n A 1 167 PHE 167 154 154 PHE PHE A . n A 1 168 GLY 168 155 155 GLY GLY A . n A 1 169 PHE 169 156 156 PHE PHE A . n A 1 170 THR 170 157 157 THR THR A . n A 1 171 SER 171 158 158 SER SER A . n A 1 172 LYS 172 159 159 LYS LYS A . n A 1 173 ALA 173 160 160 ALA ALA A . n A 1 174 GLU 174 161 161 GLU GLU A . n A 1 175 SER 175 162 162 SER SER A . n A 1 176 MET 176 163 163 MET MET A . n A 1 177 ARG 177 164 164 ARG ARG A . n A 1 178 PRO 178 165 165 PRO PRO A . n A 1 179 GLU 179 166 166 GLU GLU A . n A 1 180 VAL 180 167 167 VAL VAL A . n A 1 181 ALA 181 168 168 ALA ALA A . n A 1 182 SER 182 169 169 SER SER A . n A 1 183 THR 183 170 170 THR THR A . n A 1 184 PHE 184 171 171 PHE PHE A . n A 1 185 LYS 185 172 172 LYS LYS A . n A 1 186 VAL 186 173 173 VAL VAL A . n A 1 187 LEU 187 174 174 LEU LEU A . n A 1 188 ARG 188 175 175 ARG ARG A . n A 1 189 ASN 189 176 176 ASN ASN A . n A 1 190 VAL 190 177 177 VAL VAL A . n A 1 191 THR 191 178 178 THR THR A . n A 1 192 VAL 192 179 179 VAL VAL A . n A 1 193 VAL 193 180 180 VAL VAL A . n A 1 194 LEU 194 181 181 LEU LEU A . n A 1 195 TRP 195 182 182 TRP TRP A . n A 1 196 SER 196 183 183 SER SER A . n A 1 197 ALA 197 184 184 ALA ALA A . n A 1 198 TYR 198 185 185 TYR TYR A . n A 1 199 PRO 199 186 186 PRO PRO A . n A 1 200 VAL 200 187 187 VAL VAL A . n A 1 201 VAL 201 188 188 VAL VAL A . n A 1 202 TRP 202 189 189 TRP TRP A . n A 1 203 LEU 203 190 190 LEU LEU A . n A 1 204 ILE 204 191 191 ILE ILE A . n A 1 205 GLY 205 192 192 GLY GLY A . n A 1 206 SER 206 193 193 SER SER A . n A 1 207 GLU 207 194 194 GLU GLU A . n A 1 208 GLY 208 195 195 GLY GLY A . n A 1 209 ALA 209 196 196 ALA ALA A . n A 1 210 GLY 210 197 197 GLY GLY A . n A 1 211 ILE 211 198 198 ILE ILE A . n A 1 212 VAL 212 199 199 VAL VAL A . n A 1 213 PRO 213 200 200 PRO PRO A . n A 1 214 LEU 214 201 201 LEU LEU A . n A 1 215 ASN 215 202 202 ASN ASN A . n A 1 216 ILE 216 203 203 ILE ILE A . n A 1 217 GLU 217 204 204 GLU GLU A . n A 1 218 THR 218 205 205 THR THR A . n A 1 219 LEU 219 206 206 LEU LEU A . n A 1 220 LEU 220 207 207 LEU LEU A . n A 1 221 PHE 221 208 208 PHE PHE A . n A 1 222 MET 222 209 209 MET MET A . n A 1 223 VAL 223 210 210 VAL VAL A . n A 1 224 LEU 224 211 211 LEU LEU A . n A 1 225 ASP 225 212 212 ASP ASP A . n A 1 226 VAL 226 213 213 VAL VAL A . n A 1 227 SER 227 214 214 SER SER A . n A 1 228 ALA 228 215 215 ALA ALA A . n A 1 229 LYS 229 216 216 LYS LYS A . n A 1 230 VAL 230 217 217 VAL VAL A . n A 1 231 GLY 231 218 218 GLY GLY A . n A 1 232 PHE 232 219 219 PHE PHE A . n A 1 233 GLY 233 220 220 GLY GLY A . n A 1 234 LEU 234 221 221 LEU LEU A . n A 1 235 ILE 235 222 222 ILE ILE A . n A 1 236 LEU 236 223 223 LEU LEU A . n A 1 237 LEU 237 224 224 LEU LEU A . n A 1 238 ARG 238 225 225 ARG ARG A . n A 1 239 SER 239 226 226 SER SER A . n A 1 240 ARG 240 227 227 ARG ARG A . n A 1 241 ALA 241 228 228 ALA ALA A . n A 1 242 ILE 242 229 229 ILE ILE A . n A 1 243 PHE 243 230 230 PHE PHE A . n A 1 244 GLY 244 231 231 GLY GLY A . n A 1 245 GLU 245 232 ? ? ? A . n A 1 246 ALA 246 233 ? ? ? A . n A 1 247 GLU 247 234 ? ? ? A . n A 1 248 ALA 248 235 ? ? ? A . n A 1 249 PRO 249 236 ? ? ? A . n A 1 250 GLU 250 237 ? ? ? A . n A 1 251 PRO 251 238 ? ? ? A . n A 1 252 SER 252 239 ? ? ? A . n A 1 253 ALA 253 240 ? ? ? A . n A 1 254 GLY 254 241 ? ? ? A . n A 1 255 ASP 255 242 ? ? ? A . n A 1 256 GLY 256 243 ? ? ? A . n A 1 257 ALA 257 244 ? ? ? A . n A 1 258 ALA 258 245 ? ? ? A . n A 1 259 ALA 259 246 ? ? ? A . n A 1 260 THR 260 247 ? ? ? A . n A 1 261 SER 261 248 ? ? ? A . n A 1 262 ASP 262 249 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET 1 301 250 RET RET A . D 4 SOG 1 302 430 SOG SOG A . E 5 L2P 1 303 270 L2P L2P A . F 6 HOH 1 401 600 HOH HOH A . F 6 HOH 2 402 601 HOH HOH A . F 6 HOH 3 403 604 HOH HOH A . F 6 HOH 4 404 605 HOH HOH A . F 6 HOH 5 405 606 HOH HOH A . F 6 HOH 6 406 607 HOH HOH A . F 6 HOH 7 407 608 HOH HOH A . F 6 HOH 8 408 609 HOH HOH A . F 6 HOH 9 409 610 HOH HOH A . F 6 HOH 10 410 611 HOH HOH A . F 6 HOH 11 411 612 HOH HOH A . F 6 HOH 12 412 613 HOH HOH A . F 6 HOH 13 413 614 HOH HOH A . F 6 HOH 14 414 617 HOH HOH A . F 6 HOH 15 415 618 HOH HOH A . F 6 HOH 16 416 619 HOH HOH A . F 6 HOH 17 417 621 HOH HOH A . F 6 HOH 18 418 622 HOH HOH A . F 6 HOH 19 419 623 HOH HOH A . F 6 HOH 20 420 624 HOH HOH A . F 6 HOH 21 421 625 HOH HOH A . F 6 HOH 22 422 626 HOH HOH A . F 6 HOH 23 423 629 HOH HOH A . F 6 HOH 24 424 630 HOH HOH A . F 6 HOH 25 425 633 HOH HOH A . F 6 HOH 26 426 636 HOH HOH A . F 6 HOH 27 427 701 HOH HOH A . F 6 HOH 28 428 703 HOH HOH A . F 6 HOH 29 429 704 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16910 ? 1 MORE -30 ? 1 'SSA (A^2)' 23360 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 102.3000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 51.1500000000 -0.8660254038 -0.5000000000 0.0000000000 88.5943988071 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2014-04-23 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' pdbx_validate_close_contact 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_ref_seq_dif 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.mon_nstd_flag' 15 3 'Structure model' '_chem_comp.name' 16 3 'Structure model' '_chem_comp.type' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 19 3 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_1' 20 3 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 21 3 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_1' 22 3 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 23 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 24 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 25 3 'Structure model' '_struct_conn.pdbx_dist_value' 26 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_ref_seq_dif.details' 41 4 'Structure model' '_chem_comp.pdbx_synonyms' 42 4 'Structure model' '_database_2.pdbx_DOI' 43 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 CNS refinement . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A GLY 33 ? ? O A HOH 421 ? ? 2.15 2 1 C1 B GLC 1 ? ? C3 A L2P 303 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 32 ? ? -18.08 -83.28 2 1 ASP A 36 ? ? -50.41 107.92 3 1 SER A 193 ? ? -59.59 -0.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A LEU -11 ? A LEU 2 3 1 Y 1 A GLU -10 ? A GLU 3 4 1 Y 1 A LEU -9 ? A LEU 4 5 1 Y 1 A LEU -8 ? A LEU 5 6 1 Y 1 A PRO -7 ? A PRO 6 7 1 Y 1 A THR -6 ? A THR 7 8 1 Y 1 A ALA -5 ? A ALA 8 9 1 Y 1 A VAL -4 ? A VAL 9 10 1 Y 1 A GLU -3 ? A GLU 10 11 1 Y 1 A GLY -2 ? A GLY 11 12 1 Y 1 A VAL -1 ? A VAL 12 13 1 Y 1 A SER 0 ? A SER 13 14 1 Y 1 A GLN 1 ? A GLN 14 15 1 Y 1 A ALA 2 ? A ALA 15 16 1 Y 1 A GLN 3 ? A GLN 16 17 1 Y 1 A ILE 4 ? A ILE 17 18 1 Y 1 A GLU 232 ? A GLU 245 19 1 Y 1 A ALA 233 ? A ALA 246 20 1 Y 1 A GLU 234 ? A GLU 247 21 1 Y 1 A ALA 235 ? A ALA 248 22 1 Y 1 A PRO 236 ? A PRO 249 23 1 Y 1 A GLU 237 ? A GLU 250 24 1 Y 1 A PRO 238 ? A PRO 251 25 1 Y 1 A SER 239 ? A SER 252 26 1 Y 1 A ALA 240 ? A ALA 253 27 1 Y 1 A GLY 241 ? A GLY 254 28 1 Y 1 A ASP 242 ? A ASP 255 29 1 Y 1 A GLY 243 ? A GLY 256 30 1 Y 1 A ALA 244 ? A ALA 257 31 1 Y 1 A ALA 245 ? A ALA 258 32 1 Y 1 A ALA 246 ? A ALA 259 33 1 Y 1 A THR 247 ? A THR 260 34 1 Y 1 A SER 248 ? A SER 261 35 1 Y 1 A ASP 249 ? A ASP 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLC C1 C N S 74 GLC C2 C N R 75 GLC C3 C N S 76 GLC C4 C N S 77 GLC C5 C N R 78 GLC C6 C N N 79 GLC O1 O N N 80 GLC O2 O N N 81 GLC O3 O N N 82 GLC O4 O N N 83 GLC O5 O N N 84 GLC O6 O N N 85 GLC H1 H N N 86 GLC H2 H N N 87 GLC H3 H N N 88 GLC H4 H N N 89 GLC H5 H N N 90 GLC H61 H N N 91 GLC H62 H N N 92 GLC HO1 H N N 93 GLC HO2 H N N 94 GLC HO3 H N N 95 GLC HO4 H N N 96 GLC HO6 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 ILE N N N N 150 ILE CA C N S 151 ILE C C N N 152 ILE O O N N 153 ILE CB C N S 154 ILE CG1 C N N 155 ILE CG2 C N N 156 ILE CD1 C N N 157 ILE OXT O N N 158 ILE H H N N 159 ILE H2 H N N 160 ILE HA H N N 161 ILE HB H N N 162 ILE HG12 H N N 163 ILE HG13 H N N 164 ILE HG21 H N N 165 ILE HG22 H N N 166 ILE HG23 H N N 167 ILE HD11 H N N 168 ILE HD12 H N N 169 ILE HD13 H N N 170 ILE HXT H N N 171 L2P C1 C N N 172 L2P O1 O N N 173 L2P C2 C N R 174 L2P O2 O N N 175 L2P C3 C N N 176 L2P O3 O N N 177 L2P C11 C N N 178 L2P C12 C N N 179 L2P C13 C N R 180 L2P C14 C N N 181 L2P C15 C N N 182 L2P C16 C N N 183 L2P C17 C N N 184 L2P C18 C N R 185 L2P C19 C N N 186 L2P C20 C N N 187 L2P C21 C N N 188 L2P C22 C N N 189 L2P C23 C N R 190 L2P C24 C N N 191 L2P C25 C N N 192 L2P C26 C N N 193 L2P C27 C N N 194 L2P C28 C N N 195 L2P C29 C N N 196 L2P C30 C N N 197 L2P C41 C N N 198 L2P C42 C N N 199 L2P C43 C N R 200 L2P C44 C N N 201 L2P C45 C N N 202 L2P C46 C N N 203 L2P C47 C N N 204 L2P C48 C N R 205 L2P C49 C N N 206 L2P C50 C N N 207 L2P C51 C N N 208 L2P C52 C N N 209 L2P C53 C N R 210 L2P C54 C N N 211 L2P C55 C N N 212 L2P C56 C N N 213 L2P C57 C N N 214 L2P C58 C N N 215 L2P C59 C N N 216 L2P C60 C N N 217 L2P H12 H N N 218 L2P H11 H N N 219 L2P H2 H N N 220 L2P H32 H N N 221 L2P H31 H N N 222 L2P H3O H N N 223 L2P H112 H N N 224 L2P H111 H N N 225 L2P H122 H N N 226 L2P H121 H N N 227 L2P H13 H N N 228 L2P H143 H N N 229 L2P H142 H N N 230 L2P H141 H N N 231 L2P H152 H N N 232 L2P H151 H N N 233 L2P H162 H N N 234 L2P H161 H N N 235 L2P H172 H N N 236 L2P H171 H N N 237 L2P H18 H N N 238 L2P H193 H N N 239 L2P H192 H N N 240 L2P H191 H N N 241 L2P H202 H N N 242 L2P H201 H N N 243 L2P H212 H N N 244 L2P H211 H N N 245 L2P H222 H N N 246 L2P H221 H N N 247 L2P H23 H N N 248 L2P H243 H N N 249 L2P H242 H N N 250 L2P H241 H N N 251 L2P H252 H N N 252 L2P H251 H N N 253 L2P H262 H N N 254 L2P H261 H N N 255 L2P H272 H N N 256 L2P H271 H N N 257 L2P H28 H N N 258 L2P H293 H N N 259 L2P H292 H N N 260 L2P H291 H N N 261 L2P H303 H N N 262 L2P H302 H N N 263 L2P H301 H N N 264 L2P H412 H N N 265 L2P H411 H N N 266 L2P H422 H N N 267 L2P H421 H N N 268 L2P H43 H N N 269 L2P H443 H N N 270 L2P H442 H N N 271 L2P H441 H N N 272 L2P H452 H N N 273 L2P H451 H N N 274 L2P H462 H N N 275 L2P H461 H N N 276 L2P H472 H N N 277 L2P H471 H N N 278 L2P H48 H N N 279 L2P H493 H N N 280 L2P H492 H N N 281 L2P H491 H N N 282 L2P H502 H N N 283 L2P H501 H N N 284 L2P H512 H N N 285 L2P H511 H N N 286 L2P H522 H N N 287 L2P H521 H N N 288 L2P H53 H N N 289 L2P H543 H N N 290 L2P H542 H N N 291 L2P H541 H N N 292 L2P H552 H N N 293 L2P H551 H N N 294 L2P H562 H N N 295 L2P H561 H N N 296 L2P H572 H N N 297 L2P H571 H N N 298 L2P H58 H N N 299 L2P H593 H N N 300 L2P H592 H N N 301 L2P H591 H N N 302 L2P H603 H N N 303 L2P H602 H N N 304 L2P H601 H N N 305 LEU N N N N 306 LEU CA C N S 307 LEU C C N N 308 LEU O O N N 309 LEU CB C N N 310 LEU CG C N N 311 LEU CD1 C N N 312 LEU CD2 C N N 313 LEU OXT O N N 314 LEU H H N N 315 LEU H2 H N N 316 LEU HA H N N 317 LEU HB2 H N N 318 LEU HB3 H N N 319 LEU HG H N N 320 LEU HD11 H N N 321 LEU HD12 H N N 322 LEU HD13 H N N 323 LEU HD21 H N N 324 LEU HD22 H N N 325 LEU HD23 H N N 326 LEU HXT H N N 327 LYS N N N N 328 LYS CA C N S 329 LYS C C N N 330 LYS O O N N 331 LYS CB C N N 332 LYS CG C N N 333 LYS CD C N N 334 LYS CE C N N 335 LYS NZ N N N 336 LYS OXT O N N 337 LYS H H N N 338 LYS H2 H N N 339 LYS HA H N N 340 LYS HB2 H N N 341 LYS HB3 H N N 342 LYS HG2 H N N 343 LYS HG3 H N N 344 LYS HD2 H N N 345 LYS HD3 H N N 346 LYS HE2 H N N 347 LYS HE3 H N N 348 LYS HZ1 H N N 349 LYS HZ2 H N N 350 LYS HZ3 H N N 351 LYS HXT H N N 352 MAN C1 C N S 353 MAN C2 C N S 354 MAN C3 C N S 355 MAN C4 C N S 356 MAN C5 C N R 357 MAN C6 C N N 358 MAN O1 O N N 359 MAN O2 O N N 360 MAN O3 O N N 361 MAN O4 O N N 362 MAN O5 O N N 363 MAN O6 O N N 364 MAN H1 H N N 365 MAN H2 H N N 366 MAN H3 H N N 367 MAN H4 H N N 368 MAN H5 H N N 369 MAN H61 H N N 370 MAN H62 H N N 371 MAN HO1 H N N 372 MAN HO2 H N N 373 MAN HO3 H N N 374 MAN HO4 H N N 375 MAN HO6 H N N 376 MET N N N N 377 MET CA C N S 378 MET C C N N 379 MET O O N N 380 MET CB C N N 381 MET CG C N N 382 MET SD S N N 383 MET CE C N N 384 MET OXT O N N 385 MET H H N N 386 MET H2 H N N 387 MET HA H N N 388 MET HB2 H N N 389 MET HB3 H N N 390 MET HG2 H N N 391 MET HG3 H N N 392 MET HE1 H N N 393 MET HE2 H N N 394 MET HE3 H N N 395 MET HXT H N N 396 PHE N N N N 397 PHE CA C N S 398 PHE C C N N 399 PHE O O N N 400 PHE CB C N N 401 PHE CG C Y N 402 PHE CD1 C Y N 403 PHE CD2 C Y N 404 PHE CE1 C Y N 405 PHE CE2 C Y N 406 PHE CZ C Y N 407 PHE OXT O N N 408 PHE H H N N 409 PHE H2 H N N 410 PHE HA H N N 411 PHE HB2 H N N 412 PHE HB3 H N N 413 PHE HD1 H N N 414 PHE HD2 H N N 415 PHE HE1 H N N 416 PHE HE2 H N N 417 PHE HZ H N N 418 PHE HXT H N N 419 PRO N N N N 420 PRO CA C N S 421 PRO C C N N 422 PRO O O N N 423 PRO CB C N N 424 PRO CG C N N 425 PRO CD C N N 426 PRO OXT O N N 427 PRO H H N N 428 PRO HA H N N 429 PRO HB2 H N N 430 PRO HB3 H N N 431 PRO HG2 H N N 432 PRO HG3 H N N 433 PRO HD2 H N N 434 PRO HD3 H N N 435 PRO HXT H N N 436 RET C1 C N N 437 RET C2 C N N 438 RET C3 C N N 439 RET C4 C N N 440 RET C5 C N N 441 RET C6 C N N 442 RET C7 C N N 443 RET C8 C N N 444 RET C9 C N N 445 RET C10 C N N 446 RET C11 C N N 447 RET C12 C N N 448 RET C13 C N N 449 RET C14 C N N 450 RET C15 C N N 451 RET O1 O N N 452 RET C16 C N N 453 RET C17 C N N 454 RET C18 C N N 455 RET C19 C N N 456 RET C20 C N N 457 RET H21 H N N 458 RET H22 H N N 459 RET H31 H N N 460 RET H32 H N N 461 RET H41 H N N 462 RET H42 H N N 463 RET H7 H N N 464 RET H8 H N N 465 RET H10 H N N 466 RET H11 H N N 467 RET H12 H N N 468 RET H14 H N N 469 RET H15 H N N 470 RET H161 H N N 471 RET H162 H N N 472 RET H163 H N N 473 RET H171 H N N 474 RET H172 H N N 475 RET H173 H N N 476 RET H181 H N N 477 RET H182 H N N 478 RET H183 H N N 479 RET H191 H N N 480 RET H192 H N N 481 RET H193 H N N 482 RET H201 H N N 483 RET H202 H N N 484 RET H203 H N N 485 SER N N N N 486 SER CA C N S 487 SER C C N N 488 SER O O N N 489 SER CB C N N 490 SER OG O N N 491 SER OXT O N N 492 SER H H N N 493 SER H2 H N N 494 SER HA H N N 495 SER HB2 H N N 496 SER HB3 H N N 497 SER HG H N N 498 SER HXT H N N 499 SGA C1 C N R 500 SGA C2 C N R 501 SGA C3 C N S 502 SGA C4 C N S 503 SGA C5 C N R 504 SGA C6 C N N 505 SGA O1 O N N 506 SGA O2 O N N 507 SGA O3 O N N 508 SGA O4 O N N 509 SGA O5 O N N 510 SGA O6 O N N 511 SGA S S N N 512 SGA O1S O N N 513 SGA O2S O N N 514 SGA O3S O N N 515 SGA H1 H N N 516 SGA H2 H N N 517 SGA H3 H N N 518 SGA H4 H N N 519 SGA H5 H N N 520 SGA H61 H N N 521 SGA H62 H N N 522 SGA HO1 H N N 523 SGA HO2 H N N 524 SGA HO4 H N N 525 SGA HO6 H N N 526 SGA HOS3 H N N 527 SOG C1 C N S 528 SOG C2 C N R 529 SOG C3 C N S 530 SOG C4 C N S 531 SOG C5 C N R 532 SOG C6 C N N 533 SOG "C1'" C N N 534 SOG "C2'" C N N 535 SOG "C3'" C N N 536 SOG "C4'" C N N 537 SOG "C5'" C N N 538 SOG "C6'" C N N 539 SOG "C7'" C N N 540 SOG "C8'" C N N 541 SOG S1 S N N 542 SOG O2 O N N 543 SOG O3 O N N 544 SOG O4 O N N 545 SOG O5 O N N 546 SOG O6 O N N 547 SOG H1 H N N 548 SOG H2 H N N 549 SOG H3 H N N 550 SOG H4 H N N 551 SOG H5 H N N 552 SOG H61 H N N 553 SOG H62 H N N 554 SOG "H1'1" H N N 555 SOG "H1'2" H N N 556 SOG "H2'1" H N N 557 SOG "H2'2" H N N 558 SOG "H3'1" H N N 559 SOG "H3'2" H N N 560 SOG "H4'1" H N N 561 SOG "H4'2" H N N 562 SOG "H5'1" H N N 563 SOG "H5'2" H N N 564 SOG "H6'1" H N N 565 SOG "H6'2" H N N 566 SOG "H7'1" H N N 567 SOG "H7'2" H N N 568 SOG "H8'1" H N N 569 SOG "H8'2" H N N 570 SOG "H8'3" H N N 571 SOG HO2 H N N 572 SOG HO3 H N N 573 SOG HO4 H N N 574 SOG HO6 H N N 575 THR N N N N 576 THR CA C N S 577 THR C C N N 578 THR O O N N 579 THR CB C N R 580 THR OG1 O N N 581 THR CG2 C N N 582 THR OXT O N N 583 THR H H N N 584 THR H2 H N N 585 THR HA H N N 586 THR HB H N N 587 THR HG1 H N N 588 THR HG21 H N N 589 THR HG22 H N N 590 THR HG23 H N N 591 THR HXT H N N 592 TRP N N N N 593 TRP CA C N S 594 TRP C C N N 595 TRP O O N N 596 TRP CB C N N 597 TRP CG C Y N 598 TRP CD1 C Y N 599 TRP CD2 C Y N 600 TRP NE1 N Y N 601 TRP CE2 C Y N 602 TRP CE3 C Y N 603 TRP CZ2 C Y N 604 TRP CZ3 C Y N 605 TRP CH2 C Y N 606 TRP OXT O N N 607 TRP H H N N 608 TRP H2 H N N 609 TRP HA H N N 610 TRP HB2 H N N 611 TRP HB3 H N N 612 TRP HD1 H N N 613 TRP HE1 H N N 614 TRP HE3 H N N 615 TRP HZ2 H N N 616 TRP HZ3 H N N 617 TRP HH2 H N N 618 TRP HXT H N N 619 TYR N N N N 620 TYR CA C N S 621 TYR C C N N 622 TYR O O N N 623 TYR CB C N N 624 TYR CG C Y N 625 TYR CD1 C Y N 626 TYR CD2 C Y N 627 TYR CE1 C Y N 628 TYR CE2 C Y N 629 TYR CZ C Y N 630 TYR OH O N N 631 TYR OXT O N N 632 TYR H H N N 633 TYR H2 H N N 634 TYR HA H N N 635 TYR HB2 H N N 636 TYR HB3 H N N 637 TYR HD1 H N N 638 TYR HD2 H N N 639 TYR HE1 H N N 640 TYR HE2 H N N 641 TYR HH H N N 642 TYR HXT H N N 643 VAL N N N N 644 VAL CA C N S 645 VAL C C N N 646 VAL O O N N 647 VAL CB C N N 648 VAL CG1 C N N 649 VAL CG2 C N N 650 VAL OXT O N N 651 VAL H H N N 652 VAL H2 H N N 653 VAL HA H N N 654 VAL HB H N N 655 VAL HG11 H N N 656 VAL HG12 H N N 657 VAL HG13 H N N 658 VAL HG21 H N N 659 VAL HG22 H N N 660 VAL HG23 H N N 661 VAL HXT H N N 662 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLC C1 C2 sing N N 70 GLC C1 O1 sing N N 71 GLC C1 O5 sing N N 72 GLC C1 H1 sing N N 73 GLC C2 C3 sing N N 74 GLC C2 O2 sing N N 75 GLC C2 H2 sing N N 76 GLC C3 C4 sing N N 77 GLC C3 O3 sing N N 78 GLC C3 H3 sing N N 79 GLC C4 C5 sing N N 80 GLC C4 O4 sing N N 81 GLC C4 H4 sing N N 82 GLC C5 C6 sing N N 83 GLC C5 O5 sing N N 84 GLC C5 H5 sing N N 85 GLC C6 O6 sing N N 86 GLC C6 H61 sing N N 87 GLC C6 H62 sing N N 88 GLC O1 HO1 sing N N 89 GLC O2 HO2 sing N N 90 GLC O3 HO3 sing N N 91 GLC O4 HO4 sing N N 92 GLC O6 HO6 sing N N 93 GLN N CA sing N N 94 GLN N H sing N N 95 GLN N H2 sing N N 96 GLN CA C sing N N 97 GLN CA CB sing N N 98 GLN CA HA sing N N 99 GLN C O doub N N 100 GLN C OXT sing N N 101 GLN CB CG sing N N 102 GLN CB HB2 sing N N 103 GLN CB HB3 sing N N 104 GLN CG CD sing N N 105 GLN CG HG2 sing N N 106 GLN CG HG3 sing N N 107 GLN CD OE1 doub N N 108 GLN CD NE2 sing N N 109 GLN NE2 HE21 sing N N 110 GLN NE2 HE22 sing N N 111 GLN OXT HXT sing N N 112 GLU N CA sing N N 113 GLU N H sing N N 114 GLU N H2 sing N N 115 GLU CA C sing N N 116 GLU CA CB sing N N 117 GLU CA HA sing N N 118 GLU C O doub N N 119 GLU C OXT sing N N 120 GLU CB CG sing N N 121 GLU CB HB2 sing N N 122 GLU CB HB3 sing N N 123 GLU CG CD sing N N 124 GLU CG HG2 sing N N 125 GLU CG HG3 sing N N 126 GLU CD OE1 doub N N 127 GLU CD OE2 sing N N 128 GLU OE2 HE2 sing N N 129 GLU OXT HXT sing N N 130 GLY N CA sing N N 131 GLY N H sing N N 132 GLY N H2 sing N N 133 GLY CA C sing N N 134 GLY CA HA2 sing N N 135 GLY CA HA3 sing N N 136 GLY C O doub N N 137 GLY C OXT sing N N 138 GLY OXT HXT sing N N 139 HOH O H1 sing N N 140 HOH O H2 sing N N 141 ILE N CA sing N N 142 ILE N H sing N N 143 ILE N H2 sing N N 144 ILE CA C sing N N 145 ILE CA CB sing N N 146 ILE CA HA sing N N 147 ILE C O doub N N 148 ILE C OXT sing N N 149 ILE CB CG1 sing N N 150 ILE CB CG2 sing N N 151 ILE CB HB sing N N 152 ILE CG1 CD1 sing N N 153 ILE CG1 HG12 sing N N 154 ILE CG1 HG13 sing N N 155 ILE CG2 HG21 sing N N 156 ILE CG2 HG22 sing N N 157 ILE CG2 HG23 sing N N 158 ILE CD1 HD11 sing N N 159 ILE CD1 HD12 sing N N 160 ILE CD1 HD13 sing N N 161 ILE OXT HXT sing N N 162 L2P C1 O1 sing N N 163 L2P C1 C2 sing N N 164 L2P C1 H12 sing N N 165 L2P C1 H11 sing N N 166 L2P O1 C11 sing N N 167 L2P C2 O2 sing N N 168 L2P C2 C3 sing N N 169 L2P C2 H2 sing N N 170 L2P O2 C41 sing N N 171 L2P C3 O3 sing N N 172 L2P C3 H32 sing N N 173 L2P C3 H31 sing N N 174 L2P O3 H3O sing N N 175 L2P C11 C12 sing N N 176 L2P C11 H112 sing N N 177 L2P C11 H111 sing N N 178 L2P C12 C13 sing N N 179 L2P C12 H122 sing N N 180 L2P C12 H121 sing N N 181 L2P C13 C14 sing N N 182 L2P C13 C15 sing N N 183 L2P C13 H13 sing N N 184 L2P C14 H143 sing N N 185 L2P C14 H142 sing N N 186 L2P C14 H141 sing N N 187 L2P C15 C16 sing N N 188 L2P C15 H152 sing N N 189 L2P C15 H151 sing N N 190 L2P C16 C17 sing N N 191 L2P C16 H162 sing N N 192 L2P C16 H161 sing N N 193 L2P C17 C18 sing N N 194 L2P C17 H172 sing N N 195 L2P C17 H171 sing N N 196 L2P C18 C19 sing N N 197 L2P C18 C20 sing N N 198 L2P C18 H18 sing N N 199 L2P C19 H193 sing N N 200 L2P C19 H192 sing N N 201 L2P C19 H191 sing N N 202 L2P C20 C21 sing N N 203 L2P C20 H202 sing N N 204 L2P C20 H201 sing N N 205 L2P C21 C22 sing N N 206 L2P C21 H212 sing N N 207 L2P C21 H211 sing N N 208 L2P C22 C23 sing N N 209 L2P C22 H222 sing N N 210 L2P C22 H221 sing N N 211 L2P C23 C24 sing N N 212 L2P C23 C25 sing N N 213 L2P C23 H23 sing N N 214 L2P C24 H243 sing N N 215 L2P C24 H242 sing N N 216 L2P C24 H241 sing N N 217 L2P C25 C26 sing N N 218 L2P C25 H252 sing N N 219 L2P C25 H251 sing N N 220 L2P C26 C27 sing N N 221 L2P C26 H262 sing N N 222 L2P C26 H261 sing N N 223 L2P C27 C28 sing N N 224 L2P C27 H272 sing N N 225 L2P C27 H271 sing N N 226 L2P C28 C29 sing N N 227 L2P C28 C30 sing N N 228 L2P C28 H28 sing N N 229 L2P C29 H293 sing N N 230 L2P C29 H292 sing N N 231 L2P C29 H291 sing N N 232 L2P C30 H303 sing N N 233 L2P C30 H302 sing N N 234 L2P C30 H301 sing N N 235 L2P C41 C42 sing N N 236 L2P C41 H412 sing N N 237 L2P C41 H411 sing N N 238 L2P C42 C43 sing N N 239 L2P C42 H422 sing N N 240 L2P C42 H421 sing N N 241 L2P C43 C44 sing N N 242 L2P C43 C45 sing N N 243 L2P C43 H43 sing N N 244 L2P C44 H443 sing N N 245 L2P C44 H442 sing N N 246 L2P C44 H441 sing N N 247 L2P C45 C46 sing N N 248 L2P C45 H452 sing N N 249 L2P C45 H451 sing N N 250 L2P C46 C47 sing N N 251 L2P C46 H462 sing N N 252 L2P C46 H461 sing N N 253 L2P C47 C48 sing N N 254 L2P C47 H472 sing N N 255 L2P C47 H471 sing N N 256 L2P C48 C49 sing N N 257 L2P C48 C50 sing N N 258 L2P C48 H48 sing N N 259 L2P C49 H493 sing N N 260 L2P C49 H492 sing N N 261 L2P C49 H491 sing N N 262 L2P C50 C51 sing N N 263 L2P C50 H502 sing N N 264 L2P C50 H501 sing N N 265 L2P C51 C52 sing N N 266 L2P C51 H512 sing N N 267 L2P C51 H511 sing N N 268 L2P C52 C53 sing N N 269 L2P C52 H522 sing N N 270 L2P C52 H521 sing N N 271 L2P C53 C54 sing N N 272 L2P C53 C55 sing N N 273 L2P C53 H53 sing N N 274 L2P C54 H543 sing N N 275 L2P C54 H542 sing N N 276 L2P C54 H541 sing N N 277 L2P C55 C56 sing N N 278 L2P C55 H552 sing N N 279 L2P C55 H551 sing N N 280 L2P C56 C57 sing N N 281 L2P C56 H562 sing N N 282 L2P C56 H561 sing N N 283 L2P C57 C58 sing N N 284 L2P C57 H572 sing N N 285 L2P C57 H571 sing N N 286 L2P C58 C59 sing N N 287 L2P C58 C60 sing N N 288 L2P C58 H58 sing N N 289 L2P C59 H593 sing N N 290 L2P C59 H592 sing N N 291 L2P C59 H591 sing N N 292 L2P C60 H603 sing N N 293 L2P C60 H602 sing N N 294 L2P C60 H601 sing N N 295 LEU N CA sing N N 296 LEU N H sing N N 297 LEU N H2 sing N N 298 LEU CA C sing N N 299 LEU CA CB sing N N 300 LEU CA HA sing N N 301 LEU C O doub N N 302 LEU C OXT sing N N 303 LEU CB CG sing N N 304 LEU CB HB2 sing N N 305 LEU CB HB3 sing N N 306 LEU CG CD1 sing N N 307 LEU CG CD2 sing N N 308 LEU CG HG sing N N 309 LEU CD1 HD11 sing N N 310 LEU CD1 HD12 sing N N 311 LEU CD1 HD13 sing N N 312 LEU CD2 HD21 sing N N 313 LEU CD2 HD22 sing N N 314 LEU CD2 HD23 sing N N 315 LEU OXT HXT sing N N 316 LYS N CA sing N N 317 LYS N H sing N N 318 LYS N H2 sing N N 319 LYS CA C sing N N 320 LYS CA CB sing N N 321 LYS CA HA sing N N 322 LYS C O doub N N 323 LYS C OXT sing N N 324 LYS CB CG sing N N 325 LYS CB HB2 sing N N 326 LYS CB HB3 sing N N 327 LYS CG CD sing N N 328 LYS CG HG2 sing N N 329 LYS CG HG3 sing N N 330 LYS CD CE sing N N 331 LYS CD HD2 sing N N 332 LYS CD HD3 sing N N 333 LYS CE NZ sing N N 334 LYS CE HE2 sing N N 335 LYS CE HE3 sing N N 336 LYS NZ HZ1 sing N N 337 LYS NZ HZ2 sing N N 338 LYS NZ HZ3 sing N N 339 LYS OXT HXT sing N N 340 MAN C1 C2 sing N N 341 MAN C1 O1 sing N N 342 MAN C1 O5 sing N N 343 MAN C1 H1 sing N N 344 MAN C2 C3 sing N N 345 MAN C2 O2 sing N N 346 MAN C2 H2 sing N N 347 MAN C3 C4 sing N N 348 MAN C3 O3 sing N N 349 MAN C3 H3 sing N N 350 MAN C4 C5 sing N N 351 MAN C4 O4 sing N N 352 MAN C4 H4 sing N N 353 MAN C5 C6 sing N N 354 MAN C5 O5 sing N N 355 MAN C5 H5 sing N N 356 MAN C6 O6 sing N N 357 MAN C6 H61 sing N N 358 MAN C6 H62 sing N N 359 MAN O1 HO1 sing N N 360 MAN O2 HO2 sing N N 361 MAN O3 HO3 sing N N 362 MAN O4 HO4 sing N N 363 MAN O6 HO6 sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 RET C1 C2 sing N N 424 RET C1 C6 sing N N 425 RET C1 C16 sing N N 426 RET C1 C17 sing N N 427 RET C2 C3 sing N N 428 RET C2 H21 sing N N 429 RET C2 H22 sing N N 430 RET C3 C4 sing N N 431 RET C3 H31 sing N N 432 RET C3 H32 sing N N 433 RET C4 C5 sing N N 434 RET C4 H41 sing N N 435 RET C4 H42 sing N N 436 RET C5 C6 doub N N 437 RET C5 C18 sing N N 438 RET C6 C7 sing N N 439 RET C7 C8 doub N E 440 RET C7 H7 sing N N 441 RET C8 C9 sing N N 442 RET C8 H8 sing N N 443 RET C9 C10 doub N E 444 RET C9 C19 sing N N 445 RET C10 C11 sing N N 446 RET C10 H10 sing N N 447 RET C11 C12 doub N E 448 RET C11 H11 sing N N 449 RET C12 C13 sing N N 450 RET C12 H12 sing N N 451 RET C13 C14 doub N E 452 RET C13 C20 sing N N 453 RET C14 C15 sing N N 454 RET C14 H14 sing N N 455 RET C15 O1 doub N N 456 RET C15 H15 sing N N 457 RET C16 H161 sing N N 458 RET C16 H162 sing N N 459 RET C16 H163 sing N N 460 RET C17 H171 sing N N 461 RET C17 H172 sing N N 462 RET C17 H173 sing N N 463 RET C18 H181 sing N N 464 RET C18 H182 sing N N 465 RET C18 H183 sing N N 466 RET C19 H191 sing N N 467 RET C19 H192 sing N N 468 RET C19 H193 sing N N 469 RET C20 H201 sing N N 470 RET C20 H202 sing N N 471 RET C20 H203 sing N N 472 SER N CA sing N N 473 SER N H sing N N 474 SER N H2 sing N N 475 SER CA C sing N N 476 SER CA CB sing N N 477 SER CA HA sing N N 478 SER C O doub N N 479 SER C OXT sing N N 480 SER CB OG sing N N 481 SER CB HB2 sing N N 482 SER CB HB3 sing N N 483 SER OG HG sing N N 484 SER OXT HXT sing N N 485 SGA C1 C2 sing N N 486 SGA C1 O1 sing N N 487 SGA C1 O5 sing N N 488 SGA C1 H1 sing N N 489 SGA C2 C3 sing N N 490 SGA C2 O2 sing N N 491 SGA C2 H2 sing N N 492 SGA C3 C4 sing N N 493 SGA C3 O3 sing N N 494 SGA C3 H3 sing N N 495 SGA C4 C5 sing N N 496 SGA C4 O4 sing N N 497 SGA C4 H4 sing N N 498 SGA C5 C6 sing N N 499 SGA C5 O5 sing N N 500 SGA C5 H5 sing N N 501 SGA C6 O6 sing N N 502 SGA C6 H61 sing N N 503 SGA C6 H62 sing N N 504 SGA O1 HO1 sing N N 505 SGA O2 HO2 sing N N 506 SGA O3 S sing N N 507 SGA O4 HO4 sing N N 508 SGA O6 HO6 sing N N 509 SGA S O1S doub N N 510 SGA S O2S doub N N 511 SGA S O3S sing N N 512 SGA O3S HOS3 sing N N 513 SOG C1 C2 sing N N 514 SOG C1 S1 sing N N 515 SOG C1 O5 sing N N 516 SOG C1 H1 sing N N 517 SOG C2 C3 sing N N 518 SOG C2 O2 sing N N 519 SOG C2 H2 sing N N 520 SOG C3 C4 sing N N 521 SOG C3 O3 sing N N 522 SOG C3 H3 sing N N 523 SOG C4 C5 sing N N 524 SOG C4 O4 sing N N 525 SOG C4 H4 sing N N 526 SOG C5 C6 sing N N 527 SOG C5 O5 sing N N 528 SOG C5 H5 sing N N 529 SOG C6 O6 sing N N 530 SOG C6 H61 sing N N 531 SOG C6 H62 sing N N 532 SOG "C1'" "C2'" sing N N 533 SOG "C1'" S1 sing N N 534 SOG "C1'" "H1'1" sing N N 535 SOG "C1'" "H1'2" sing N N 536 SOG "C2'" "C3'" sing N N 537 SOG "C2'" "H2'1" sing N N 538 SOG "C2'" "H2'2" sing N N 539 SOG "C3'" "C4'" sing N N 540 SOG "C3'" "H3'1" sing N N 541 SOG "C3'" "H3'2" sing N N 542 SOG "C4'" "C5'" sing N N 543 SOG "C4'" "H4'1" sing N N 544 SOG "C4'" "H4'2" sing N N 545 SOG "C5'" "C6'" sing N N 546 SOG "C5'" "H5'1" sing N N 547 SOG "C5'" "H5'2" sing N N 548 SOG "C6'" "C7'" sing N N 549 SOG "C6'" "H6'1" sing N N 550 SOG "C6'" "H6'2" sing N N 551 SOG "C7'" "C8'" sing N N 552 SOG "C7'" "H7'1" sing N N 553 SOG "C7'" "H7'2" sing N N 554 SOG "C8'" "H8'1" sing N N 555 SOG "C8'" "H8'2" sing N N 556 SOG "C8'" "H8'3" sing N N 557 SOG O2 HO2 sing N N 558 SOG O3 HO3 sing N N 559 SOG O4 HO4 sing N N 560 SOG O6 HO6 sing N N 561 THR N CA sing N N 562 THR N H sing N N 563 THR N H2 sing N N 564 THR CA C sing N N 565 THR CA CB sing N N 566 THR CA HA sing N N 567 THR C O doub N N 568 THR C OXT sing N N 569 THR CB OG1 sing N N 570 THR CB CG2 sing N N 571 THR CB HB sing N N 572 THR OG1 HG1 sing N N 573 THR CG2 HG21 sing N N 574 THR CG2 HG22 sing N N 575 THR CG2 HG23 sing N N 576 THR OXT HXT sing N N 577 TRP N CA sing N N 578 TRP N H sing N N 579 TRP N H2 sing N N 580 TRP CA C sing N N 581 TRP CA CB sing N N 582 TRP CA HA sing N N 583 TRP C O doub N N 584 TRP C OXT sing N N 585 TRP CB CG sing N N 586 TRP CB HB2 sing N N 587 TRP CB HB3 sing N N 588 TRP CG CD1 doub Y N 589 TRP CG CD2 sing Y N 590 TRP CD1 NE1 sing Y N 591 TRP CD1 HD1 sing N N 592 TRP CD2 CE2 doub Y N 593 TRP CD2 CE3 sing Y N 594 TRP NE1 CE2 sing Y N 595 TRP NE1 HE1 sing N N 596 TRP CE2 CZ2 sing Y N 597 TRP CE3 CZ3 doub Y N 598 TRP CE3 HE3 sing N N 599 TRP CZ2 CH2 doub Y N 600 TRP CZ2 HZ2 sing N N 601 TRP CZ3 CH2 sing Y N 602 TRP CZ3 HZ3 sing N N 603 TRP CH2 HH2 sing N N 604 TRP OXT HXT sing N N 605 TYR N CA sing N N 606 TYR N H sing N N 607 TYR N H2 sing N N 608 TYR CA C sing N N 609 TYR CA CB sing N N 610 TYR CA HA sing N N 611 TYR C O doub N N 612 TYR C OXT sing N N 613 TYR CB CG sing N N 614 TYR CB HB2 sing N N 615 TYR CB HB3 sing N N 616 TYR CG CD1 doub Y N 617 TYR CG CD2 sing Y N 618 TYR CD1 CE1 sing Y N 619 TYR CD1 HD1 sing N N 620 TYR CD2 CE2 doub Y N 621 TYR CD2 HD2 sing N N 622 TYR CE1 CZ doub Y N 623 TYR CE1 HE1 sing N N 624 TYR CE2 CZ sing Y N 625 TYR CE2 HE2 sing N N 626 TYR CZ OH sing N N 627 TYR OH HH sing N N 628 TYR OXT HXT sing N N 629 VAL N CA sing N N 630 VAL N H sing N N 631 VAL N H2 sing N N 632 VAL CA C sing N N 633 VAL CA CB sing N N 634 VAL CA HA sing N N 635 VAL C O doub N N 636 VAL C OXT sing N N 637 VAL CB CG1 sing N N 638 VAL CB CG2 sing N N 639 VAL CB HB sing N N 640 VAL CG1 HG11 sing N N 641 VAL CG1 HG12 sing N N 642 VAL CG1 HG13 sing N N 643 VAL CG2 HG21 sing N N 644 VAL CG2 HG22 sing N N 645 VAL CG2 HG23 sing N N 646 VAL OXT HXT sing N N 647 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 ? GLC 400 n B 2 MAN 2 B MAN 2 ? MAN 410 n B 2 SGA 3 B SGA 3 ? SGA 420 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man SGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGalp[3S]b' SGA 'COMMON NAME' GMML 1.0 3-sulfo-b-D-galactopyranose SGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp3SO3 # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalp[3S]b1-6DManpa1-2DGlcpa1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a2122h-1a_1-5][a1122h-1a_1-5][a2112h-1b_1-5_3*OSO/3=O/3=O]/1-2-3/a2-b1_b6-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-D-Manp]{[(6+1)][b-D-Galp3SO3]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 MAN C1 O1 1 GLC O2 HO2 sing ? 2 2 3 SGA C1 O1 2 MAN O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 MAN 2 n 2 SGA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 RETINAL RET 4 'octyl 1-thio-beta-D-glucopyranoside' SOG 5 2,3-DI-PHYTANYL-GLYCEROL L2P 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3VHZ _pdbx_initial_refinement_model.details 'pdb entry 3vhz' #