HEADER RECOMBINATION ACTIVATOR 06-OCT-11 3VIQ TITLE CRYSTAL STRUCTURE OF SWI5-SFR1 COMPLEX FROM FISSION YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: DNA REPAIR PROTEIN DDS20, MEIOTICALLY UP-REGULATED GENE 13 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MATING-TYPE SWITCHING PROTEIN SWI5; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: DNA REPAIR PROTEIN SWI5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_TAXID: 284812; SOURCE 4 STRAIN: 972H-; SOURCE 5 GENE: SFR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 10 ORGANISM_TAXID: 284812; SOURCE 11 STRAIN: 972H-; SOURCE 12 GENE: SWI5; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECOMBINATION ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,Y.MURAYAMA,H.HASHIMOTO,Y.KOKABU,M.IKEGUCHI,M.SATO, AUTHOR 2 K.MAYANAGI,Y.TSUTSUI,H.IWASAKI,T.SHIMIZU REVDAT 2 20-MAR-24 3VIQ 1 REMARK SEQADV REVDAT 1 22-AUG-12 3VIQ 0 JRNL AUTH N.KUWABARA,Y.MURAYAMA,H.HASHIMOTO,Y.KOKABU,M.IKEGUCHI, JRNL AUTH 2 M.SATO,K.MAYANAGI,Y.TSUTSUI,H.IWASAKI,T.SHIMIZU JRNL TITL MECHANISTIC INSIGHTS INTO THE ACTIVATION OF RAD51-MEDIATED JRNL TITL 2 STRAND EXCHANGE FROM THE STRUCTURE OF A RECOMBINATION JRNL TITL 3 ACTIVATOR, THE SWI5-SFR1 COMPLEX JRNL REF STRUCTURE V. 20 440 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22405003 JRNL DOI 10.1016/J.STR.2012.01.005 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0113 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 1.54000 REMARK 3 B33 (A**2) : -2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3300 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2344 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4411 ; 1.324 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5717 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 5.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;35.788 ;25.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;15.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.872 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3611 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 628 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6019 -16.2112 -14.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.3583 T22: 0.2770 REMARK 3 T33: 0.3310 T12: -0.0039 REMARK 3 T13: 0.0007 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.3509 L22: 0.1424 REMARK 3 L33: 0.7347 L12: 0.1623 REMARK 3 L13: -0.2768 L23: -0.2752 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: -0.1272 S13: 0.1145 REMARK 3 S21: 0.0745 S22: -0.0456 S23: 0.0118 REMARK 3 S31: -0.1869 S32: -0.1608 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6309 -31.8268 -17.5643 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: 0.0910 REMARK 3 T33: 0.0389 T12: -0.0353 REMARK 3 T13: -0.0092 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2912 L22: 0.2354 REMARK 3 L33: 3.7323 L12: 0.0666 REMARK 3 L13: 0.4337 L23: 0.4567 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0999 S13: -0.0491 REMARK 3 S21: -0.0355 S22: -0.0557 S23: -0.0326 REMARK 3 S31: 0.0783 S32: -0.2779 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 184 C 299 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9762 16.1382 -4.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.3548 T22: 0.2819 REMARK 3 T33: 0.4036 T12: -0.1353 REMARK 3 T13: -0.0708 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 1.1494 L22: 0.4911 REMARK 3 L33: 1.3142 L12: -0.5260 REMARK 3 L13: 0.2737 L23: -0.2551 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: -0.1887 S13: -0.3820 REMARK 3 S21: -0.1928 S22: -0.0581 S23: 0.2930 REMARK 3 S31: 0.3538 S32: -0.2798 S33: -0.1295 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 13 D 85 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9209 30.7793 -3.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.1608 REMARK 3 T33: 0.1745 T12: -0.0612 REMARK 3 T13: -0.0092 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 2.3740 L22: 1.2579 REMARK 3 L33: 5.4796 L12: -1.3133 REMARK 3 L13: -2.8279 L23: 1.5195 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.1738 S13: -0.0784 REMARK 3 S21: 0.0895 S22: 0.0092 S23: 0.1627 REMARK 3 S31: 0.1426 S32: -0.1185 S33: -0.0310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000095094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEGMME2000, 0.2M SODIUM ACETATE, REMARK 280 0.2M AMMONIUM SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.07950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.34100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.07950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.34100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 178 REMARK 465 HIS C 179 REMARK 465 MET C 180 REMARK 465 GLN C 181 REMARK 465 LEU C 182 REMARK 465 LEU C 183 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 GLN D 5 REMARK 465 LEU D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 ARG D 9 REMARK 465 VAL D 10 REMARK 465 HIS D 11 REMARK 465 LEU D 12 REMARK 465 ASN D 82 REMARK 465 GLY D 83 REMARK 465 SER D 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 299 OG REMARK 470 LYS C 224 CG CD CE NZ REMARK 470 ARG C 255 CG CD NE CZ NH1 NH2 REMARK 470 SER C 299 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 247 43.63 -155.63 REMARK 500 LYS C 262 -162.66 -76.27 REMARK 500 GLU C 292 -3.77 81.14 REMARK 500 LYS C 298 -154.87 -88.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 86 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VIR RELATED DB: PDB DBREF 3VIQ A 181 299 UNP Q9USV1 SFR1_SCHPO 181 299 DBREF 3VIQ B 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 DBREF 3VIQ C 181 299 UNP Q9USV1 SFR1_SCHPO 181 299 DBREF 3VIQ D 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 SEQADV 3VIQ GLY A 178 UNP Q9USV1 EXPRESSION TAG SEQADV 3VIQ HIS A 179 UNP Q9USV1 EXPRESSION TAG SEQADV 3VIQ MET A 180 UNP Q9USV1 EXPRESSION TAG SEQADV 3VIQ GLY C 178 UNP Q9USV1 EXPRESSION TAG SEQADV 3VIQ HIS C 179 UNP Q9USV1 EXPRESSION TAG SEQADV 3VIQ MET C 180 UNP Q9USV1 EXPRESSION TAG SEQRES 1 A 122 GLY HIS MET GLN LEU LEU SER ARG ARG LEU LYS LEU GLU SEQRES 2 A 122 LYS GLU VAL ARG ASN LEU GLN GLU GLN LEU ILE THR ALA SEQRES 3 A 122 GLU THR ALA ARG LYS VAL GLU ALA LYS ASN GLU ASP LYS SEQRES 4 A 122 ASP LEU GLN THR LEU ILE GLN LYS TRP LYS ASN ALA ALA SEQRES 5 A 122 GLN GLN ALA ALA GLU VAL LEU PHE LYS PRO MET ALA GLU SEQRES 6 A 122 ARG ILE ARG LEU ALA GLY GLY VAL THR GLN SER PHE ARG SEQRES 7 A 122 ILE GLU GLU GLY GLU ASN LYS GLY GLN ILE GLN GLU VAL SEQRES 8 A 122 ARG THR GLU PHE THR MET SER MET PHE LEU ASN GLN PHE SEQRES 9 A 122 GLY VAL PRO VAL HIS LEU MET SER PHE ASP GLU GLU ASN SEQRES 10 A 122 GLY ASP TRP LYS SER SEQRES 1 B 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 B 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 B 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 B 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 B 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 B 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 B 85 PHE GLY VAL ASN GLY SER GLU SEQRES 1 C 122 GLY HIS MET GLN LEU LEU SER ARG ARG LEU LYS LEU GLU SEQRES 2 C 122 LYS GLU VAL ARG ASN LEU GLN GLU GLN LEU ILE THR ALA SEQRES 3 C 122 GLU THR ALA ARG LYS VAL GLU ALA LYS ASN GLU ASP LYS SEQRES 4 C 122 ASP LEU GLN THR LEU ILE GLN LYS TRP LYS ASN ALA ALA SEQRES 5 C 122 GLN GLN ALA ALA GLU VAL LEU PHE LYS PRO MET ALA GLU SEQRES 6 C 122 ARG ILE ARG LEU ALA GLY GLY VAL THR GLN SER PHE ARG SEQRES 7 C 122 ILE GLU GLU GLY GLU ASN LYS GLY GLN ILE GLN GLU VAL SEQRES 8 C 122 ARG THR GLU PHE THR MET SER MET PHE LEU ASN GLN PHE SEQRES 9 C 122 GLY VAL PRO VAL HIS LEU MET SER PHE ASP GLU GLU ASN SEQRES 10 C 122 GLY ASP TRP LYS SER SEQRES 1 D 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 D 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 D 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 D 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 D 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 D 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 D 85 PHE GLY VAL ASN GLY SER GLU HET GOL A 3 6 HET GOL A 4 6 HET NO3 A 13 4 HET SO4 C 1 5 HET GOL C 5 6 HET GOL C 6 6 HET GOL C 7 6 HET GOL C 8 6 HET GOL D 86 6 HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 7(C3 H8 O3) FORMUL 7 NO3 N O3 1- FORMUL 8 SO4 O4 S 2- FORMUL 14 HOH *164(H2 O) HELIX 1 1 HIS A 179 ASN A 213 1 35 HELIX 2 2 GLU A 214 LEU A 246 1 33 HELIX 3 3 THR A 273 PHE A 281 1 9 HELIX 4 4 GLU B 2 LYS B 30 1 29 HELIX 5 5 ASP B 35 GLU B 68 1 34 HELIX 6 6 THR B 71 GLU B 74 5 4 HELIX 7 7 LEU B 75 GLY B 80 1 6 HELIX 8 8 ARG C 185 ASN C 213 1 29 HELIX 9 9 GLU C 214 ALA C 247 1 34 HELIX 10 10 THR C 273 PHE C 281 1 9 HELIX 11 11 GLU D 14 ALA D 29 1 16 HELIX 12 12 ASP D 35 GLU D 68 1 34 HELIX 13 13 SER D 72 PHE D 76 5 5 SHEET 1 A 4 ILE A 265 THR A 270 0 SHEET 2 A 4 VAL A 250 ARG A 255 -1 N PHE A 254 O GLN A 266 SHEET 3 A 4 VAL C 250 ARG C 255 -1 O SER C 253 N THR A 251 SHEET 4 A 4 ILE C 265 THR C 270 -1 O THR C 270 N VAL C 250 SHEET 1 B 2 PHE A 290 ASP A 291 0 SHEET 2 B 2 ASP A 296 TRP A 297 -1 O ASP A 296 N ASP A 291 SITE 1 AC1 5 HOH A 73 HIS A 179 GLU A 214 ASP A 217 SITE 2 AC1 5 TYR B 50 SITE 1 AC2 5 GLY A 178 LYS A 212 ASN A 213 LYS B 3 SITE 2 AC2 5 GLU C 260 SITE 1 AC3 9 HOH A 89 HOH A 164 GLY A 178 HIS A 179 SITE 2 AC3 9 MET A 180 GLN A 181 LEU A 182 ASP A 217 SITE 3 AC3 9 LYS B 3 SITE 1 AC4 4 GLN B 5 PRO C 284 VAL C 285 HIS C 286 SITE 1 AC5 5 ARG A 269 HOH C 63 GLY C 263 GLN C 264 SITE 2 AC5 5 ASN C 279 SITE 1 AC6 5 HOH C 103 VAL C 209 ASN C 213 GLU C 214 SITE 2 AC6 5 ASP C 215 SITE 1 AC7 3 GLU A 258 PHE C 281 LYS D 63 SITE 1 AC8 6 LEU B 58 GLY B 59 GLY B 62 LYS C 208 SITE 2 AC8 6 VAL C 209 HIS D 43 SITE 1 AC9 6 ARG B 9 PHE C 281 ILE D 56 GLY D 59 SITE 2 AC9 6 MET D 60 LYS D 63 CRYST1 88.159 128.682 59.970 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016675 0.00000