HEADER RECOMBINATION ACTIVATOR 06-OCT-11 3VIR TITLE CRYSTAL STRCTURE OF SWI5 FROM FISSION YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATING-TYPE SWITCHING PROTEIN SWI5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DNA REPAIR PROTEIN SWI5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972H-; SOURCE 6 GENE: SWI5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SFR1, RECOMBINATION ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,N.YAMADA,H.HASHIMOTO,M.SATO,H.IWASAKI,T.SHIMIZU REVDAT 4 20-MAR-24 3VIR 1 HETSYN REVDAT 3 29-JUL-20 3VIR 1 COMPND REMARK HETNAM SITE REVDAT 2 14-FEB-18 3VIR 1 REMARK REVDAT 1 22-AUG-12 3VIR 0 JRNL AUTH N.KUWABARA,Y.MURAYAMA,H.HASHIMOTO,Y.KOKABU,M.IKEGUCHI, JRNL AUTH 2 M.SATO,K.MAYANAGI,Y.TSUTSUI,H.IWASAKI,T.SHIMIZU JRNL TITL MECHANISTIC INSIGHTS INTO THE ACTIVATION OF RAD51-MEDIATED JRNL TITL 2 STRAND EXCHANGE FROM THE STRUCTURE OF A RECOMBINATION JRNL TITL 3 ACTIVATOR, THE SWI5-SFR1 COMPLEX JRNL REF STRUCTURE V. 20 440 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22405003 JRNL DOI 10.1016/J.STR.2012.01.005 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0113 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 14795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.5260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43000 REMARK 3 B22 (A**2) : 3.11000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2006 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1355 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2687 ; 1.754 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3353 ; 1.020 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 6.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;40.203 ;25.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;22.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2157 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 341 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2888 15.4505 20.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.4962 REMARK 3 T33: 0.0759 T12: 0.0499 REMARK 3 T13: -0.0500 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 19.6361 L22: 1.4669 REMARK 3 L33: 3.2109 L12: -4.1522 REMARK 3 L13: -7.6367 L23: 1.4857 REMARK 3 S TENSOR REMARK 3 S11: 0.2341 S12: -0.3973 S13: 0.0296 REMARK 3 S21: 0.0945 S22: -0.1508 S23: -0.0923 REMARK 3 S31: -0.1492 S32: 0.2386 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0368 17.7509 9.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.4594 REMARK 3 T33: 0.1601 T12: 0.0636 REMARK 3 T13: 0.0241 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 27.3928 L22: 2.8736 REMARK 3 L33: 3.6244 L12: -7.7860 REMARK 3 L13: -8.9481 L23: 2.7254 REMARK 3 S TENSOR REMARK 3 S11: 0.8339 S12: 0.1116 S13: 0.2216 REMARK 3 S21: -0.3292 S22: -0.4408 S23: -0.1291 REMARK 3 S31: -0.3444 S32: -0.0193 S33: -0.3931 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 14 C 66 REMARK 3 ORIGIN FOR THE GROUP (A): 59.0438 -8.0826 17.5512 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.5279 REMARK 3 T33: 0.0386 T12: 0.0368 REMARK 3 T13: 0.0091 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 9.0980 L22: 1.6137 REMARK 3 L33: 1.0022 L12: -1.3209 REMARK 3 L13: 2.6088 L23: -0.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.1742 S12: -0.1614 S13: 0.0087 REMARK 3 S21: 0.1690 S22: 0.1636 S23: 0.1982 REMARK 3 S31: -0.0091 S32: -0.1074 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 72 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9133 -9.9262 7.2958 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.5229 REMARK 3 T33: 0.0890 T12: 0.0727 REMARK 3 T13: -0.0602 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 15.9811 L22: 2.9402 REMARK 3 L33: 1.6215 L12: -5.6340 REMARK 3 L13: 5.0034 L23: -1.7001 REMARK 3 S TENSOR REMARK 3 S11: 0.2626 S12: 0.3321 S13: 0.1298 REMARK 3 S21: -0.2476 S22: -0.2276 S23: -0.0580 REMARK 3 S31: 0.1256 S32: 0.1484 S33: -0.0351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000095095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPD, 0.1M TRIS-HCL, 24.5MM OCTYL-B REMARK 280 -GLUCOSIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.94950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.94950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 80 REMARK 465 VAL A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 SER A 84 REMARK 465 GLU A 85 REMARK 465 MET B 1 REMARK 465 GLU B 68 REMARK 465 LYS B 69 REMARK 465 CYS B 70 REMARK 465 THR B 71 REMARK 465 SER B 72 REMARK 465 VAL B 73 REMARK 465 GLU B 74 REMARK 465 LEU B 75 REMARK 465 PHE B 76 REMARK 465 ASP B 77 REMARK 465 ARG B 78 REMARK 465 PHE B 79 REMARK 465 GLY B 80 REMARK 465 VAL B 81 REMARK 465 ASN B 82 REMARK 465 GLY B 83 REMARK 465 SER B 84 REMARK 465 GLU B 85 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 LEU C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 ARG C 9 REMARK 465 VAL C 10 REMARK 465 HIS C 11 REMARK 465 LEU C 12 REMARK 465 LEU C 13 REMARK 465 HIS C 67 REMARK 465 GLU C 68 REMARK 465 LYS C 69 REMARK 465 CYS C 70 REMARK 465 THR C 71 REMARK 465 SER C 72 REMARK 465 VAL C 73 REMARK 465 GLU C 74 REMARK 465 LEU C 75 REMARK 465 PHE C 76 REMARK 465 ASP C 77 REMARK 465 ARG C 78 REMARK 465 PHE C 79 REMARK 465 GLY C 80 REMARK 465 VAL C 81 REMARK 465 ASN C 82 REMARK 465 GLY C 83 REMARK 465 SER C 84 REMARK 465 GLU C 85 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 GLN D 5 REMARK 465 LEU D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 ARG D 9 REMARK 465 VAL D 73 REMARK 465 GLU D 74 REMARK 465 LEU D 75 REMARK 465 PHE D 76 REMARK 465 ASP D 77 REMARK 465 ARG D 78 REMARK 465 PHE D 79 REMARK 465 GLY D 80 REMARK 465 VAL D 81 REMARK 465 ASN D 82 REMARK 465 GLY D 83 REMARK 465 SER D 84 REMARK 465 GLU D 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 GLU C 14 CG CD OE1 OE2 REMARK 470 GLN C 15 CG CD OE1 NE2 REMARK 470 GLN C 16 CG CD OE1 NE2 REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 GLU C 66 CG CD OE1 OE2 REMARK 470 VAL D 10 CG1 CG2 REMARK 470 LEU D 12 CG CD1 CD2 REMARK 470 LEU D 13 CG CD1 CD2 REMARK 470 GLU D 14 CG CD OE1 OE2 REMARK 470 GLN D 15 CG CD OE1 NE2 REMARK 470 GLN D 16 CG CD OE1 NE2 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 470 GLU D 68 CG CD OE1 OE2 REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 THR D 71 OG1 CG2 REMARK 470 SER D 72 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 50 OE2 GLU A 68 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 21.51 -65.76 REMARK 500 ARG A 78 -98.23 -73.45 REMARK 500 VAL C 64 -65.59 -108.57 REMARK 500 CYS D 70 38.65 -166.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VIQ RELATED DB: PDB DBREF 3VIR A 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 DBREF 3VIR B 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 DBREF 3VIR C 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 DBREF 3VIR D 1 85 UNP Q9UUB7 SWI5_SCHPO 1 85 SEQRES 1 A 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 A 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 A 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 A 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 A 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 A 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 A 85 PHE GLY VAL ASN GLY SER GLU SEQRES 1 B 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 B 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 B 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 B 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 B 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 B 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 B 85 PHE GLY VAL ASN GLY SER GLU SEQRES 1 C 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 C 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 C 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 C 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 C 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 C 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 C 85 PHE GLY VAL ASN GLY SER GLU SEQRES 1 D 85 MET GLU LYS SER GLN LEU GLU SER ARG VAL HIS LEU LEU SEQRES 2 D 85 GLU GLN GLN LYS GLU GLN LEU GLU SER SER LEU GLN ASP SEQRES 3 D 85 ALA LEU ALA LYS LEU LYS ASN ARG ASP ALA LYS GLN THR SEQRES 4 D 85 VAL GLN LYS HIS ILE ASP LEU LEU HIS THR TYR ASN GLU SEQRES 5 D 85 ILE ARG ASP ILE ALA LEU GLY MET ILE GLY LYS VAL ALA SEQRES 6 D 85 GLU HIS GLU LYS CYS THR SER VAL GLU LEU PHE ASP ARG SEQRES 7 D 85 PHE GLY VAL ASN GLY SER GLU HET BOG B 86 20 HET BOG C 86 20 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 5 BOG 2(C14 H28 O6) HELIX 1 1 LEU A 12 PHE A 79 1 68 HELIX 2 2 LYS B 3 HIS B 67 1 65 HELIX 3 3 GLN C 15 GLU C 66 1 52 HELIX 4 4 HIS D 11 LYS D 69 1 59 CRYST1 177.240 57.899 64.432 90.00 96.73 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005642 0.000000 0.000666 0.00000 SCALE2 0.000000 0.017271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015628 0.00000