HEADER HYDROLASE 11-OCT-11 3VIS TITLE CRYSTAL STRUCTURE OF CUTINASE EST119 FROM THERMOBIFIDA ALBA AHK119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA ALBA; SOURCE 3 ORGANISM_TAXID: 53522; SOURCE 4 STRAIN: AHK119; SOURCE 5 GENE: EST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE80L-EST119 KEYWDS ALPHA/BETA-HYDROLASE FOLD, ESTERASE, POLYETHYLENE TEREPHTHALATE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KITADOKORO,U.THUMARAT,R.NAKAMURA,K.NISHIMURA,H.KARATANI,H.SUZUKI, AUTHOR 2 F.KAWAI REVDAT 1 11-APR-12 3VIS 0 JRNL AUTH K.KITADOKORO,U.THUMARAT,R.NAKAMURA,K.NISHIMURA,H.KARATANI, JRNL AUTH 2 H.SUZUKI,F.KAWAI JRNL TITL CRYSTAL STRUCTURE OF CUTINASE EST119 FROM THERMOBIDA ALBA JRNL TITL 2 AHK119 THAT CAN DEGRADE MODPOLYETHYLENE TEREPHTHALATE AT JRNL TITL 3 1.76 A RESOLUTION. JRNL REF POLYM.DEGRAD.STAB. V. 97 771 2012 JRNL REFN ISSN 0141-3910 JRNL DOI 10.1016/J.POLYMDEGRADSTAB.2012.02.003 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 41770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.45000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4146 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5640 ; 2.174 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 6.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;30.642 ;22.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;12.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3206 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4905 -26.7835 23.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: 0.0526 REMARK 3 T33: 0.0492 T12: -0.0073 REMARK 3 T13: 0.0340 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.5196 L22: 0.8506 REMARK 3 L33: 0.3642 L12: 0.0388 REMARK 3 L13: 0.3226 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.0082 S13: 0.0054 REMARK 3 S21: -0.0831 S22: 0.0214 S23: -0.0317 REMARK 3 S31: -0.0103 S32: -0.0106 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3826 -0.6778 2.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.0225 REMARK 3 T33: 0.0228 T12: -0.0079 REMARK 3 T13: 0.0083 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5672 L22: 0.4682 REMARK 3 L33: 1.1984 L12: 0.0209 REMARK 3 L13: 0.6487 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0014 S13: 0.0064 REMARK 3 S21: -0.0396 S22: 0.0469 S23: 0.0301 REMARK 3 S31: -0.0102 S32: 0.0321 S33: -0.0245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB095096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41770 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD+MR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1000, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M SODIUM POTASSIUM PHOSPHATE, PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.49450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.36600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.49450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.36600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 VAL A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 VAL A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 SER B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 ARG B 18 REMARK 465 ALA B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 THR B 25 REMARK 465 ALA B 26 REMARK 465 VAL B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 VAL B 31 REMARK 465 ALA B 32 REMARK 465 LEU B 33 REMARK 465 ALA B 34 REMARK 465 ALA B 35 REMARK 465 PRO B 36 REMARK 465 ALA B 37 REMARK 465 GLN B 38 REMARK 465 ALA B 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 440 O HOH A 464 1.80 REMARK 500 O PHE A 300 O HOH A 454 1.98 REMARK 500 O HOH B 348 O HOH B 430 2.13 REMARK 500 O ALA B 73 O HOH B 374 2.17 REMARK 500 OG SER B 69 O PHE B 71 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 38 OG1 THR B 216 4546 1.87 REMARK 500 OE2 GLU A 292 OE2 GLU A 292 2656 2.04 REMARK 500 O HOH B 374 O HOH B 392 4545 2.15 REMARK 500 O HOH A 393 O HOH A 393 2656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 67 CB ARG A 67 CG -0.214 REMARK 500 GLU A 241 CB GLU A 241 CG 0.134 REMARK 500 TRP A 264 CZ3 TRP A 264 CH2 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 100 -5.98 71.03 REMARK 500 SER A 169 -114.67 57.42 REMARK 500 THR A 192 52.85 37.28 REMARK 500 HIS A 223 -86.66 -123.15 REMARK 500 THR A 297 40.20 -104.94 REMARK 500 THR B 100 -10.59 71.47 REMARK 500 SER B 169 -122.56 59.49 REMARK 500 THR B 192 53.75 34.01 REMARK 500 HIS B 223 -81.39 -123.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 557 DBREF 3VIS A 1 300 UNP F7IX06 F7IX06_9ACTO 1 300 DBREF 3VIS B 1 300 UNP F7IX06 F7IX06_9ACTO 1 300 SEQADV 3VIS HIS A -5 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS A -4 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS A -3 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS A -2 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS A -1 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS A 0 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B -5 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B -4 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B -3 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B -2 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B -1 UNP F7IX06 EXPRESSION TAG SEQADV 3VIS HIS B 0 UNP F7IX06 EXPRESSION TAG SEQRES 1 A 306 HIS HIS HIS HIS HIS HIS MET SER VAL THR THR PRO ARG SEQRES 2 A 306 ARG GLU THR SER LEU LEU SER ARG ALA LEU ARG ALA THR SEQRES 3 A 306 ALA ALA ALA ALA THR ALA VAL VAL ALA THR VAL ALA LEU SEQRES 4 A 306 ALA ALA PRO ALA GLN ALA ALA ASN PRO TYR GLU ARG GLY SEQRES 5 A 306 PRO ASN PRO THR GLU SER MET LEU GLU ALA ARG SER GLY SEQRES 6 A 306 PRO PHE SER VAL SER GLU GLU ARG ALA SER ARG PHE GLY SEQRES 7 A 306 ALA ASP GLY PHE GLY GLY GLY THR ILE TYR TYR PRO ARG SEQRES 8 A 306 GLU ASN ASN THR TYR GLY ALA ILE ALA ILE SER PRO GLY SEQRES 9 A 306 TYR THR GLY THR GLN SER SER ILE ALA TRP LEU GLY GLU SEQRES 10 A 306 ARG ILE ALA SER HIS GLY PHE VAL VAL ILE ALA ILE ASP SEQRES 11 A 306 THR ASN THR THR LEU ASP GLN PRO ASP SER ARG ALA ARG SEQRES 12 A 306 GLN LEU ASN ALA ALA LEU ASP TYR MET LEU THR ASP ALA SEQRES 13 A 306 SER SER ALA VAL ARG ASN ARG ILE ASP ALA SER ARG LEU SEQRES 14 A 306 ALA VAL MET GLY HIS SER MET GLY GLY GLY GLY THR LEU SEQRES 15 A 306 ARG LEU ALA SER GLN ARG PRO ASP LEU LYS ALA ALA ILE SEQRES 16 A 306 PRO LEU THR PRO TRP HIS LEU ASN LYS SER TRP ARG ASP SEQRES 17 A 306 ILE THR VAL PRO THR LEU ILE ILE GLY ALA GLU TYR ASP SEQRES 18 A 306 THR ILE ALA SER VAL THR LEU HIS SER LYS PRO PHE TYR SEQRES 19 A 306 ASN SER ILE PRO SER PRO THR ASP LYS ALA TYR LEU GLU SEQRES 20 A 306 LEU ASP GLY ALA SER HIS PHE ALA PRO ASN ILE THR ASN SEQRES 21 A 306 LYS THR ILE GLY MET TYR SER VAL ALA TRP LEU LYS ARG SEQRES 22 A 306 PHE VAL ASP GLU ASP THR ARG TYR THR GLN PHE LEU CYS SEQRES 23 A 306 PRO GLY PRO ARG THR GLY LEU LEU SER ASP VAL GLU GLU SEQRES 24 A 306 TYR ARG SER THR CYS PRO PHE SEQRES 1 B 306 HIS HIS HIS HIS HIS HIS MET SER VAL THR THR PRO ARG SEQRES 2 B 306 ARG GLU THR SER LEU LEU SER ARG ALA LEU ARG ALA THR SEQRES 3 B 306 ALA ALA ALA ALA THR ALA VAL VAL ALA THR VAL ALA LEU SEQRES 4 B 306 ALA ALA PRO ALA GLN ALA ALA ASN PRO TYR GLU ARG GLY SEQRES 5 B 306 PRO ASN PRO THR GLU SER MET LEU GLU ALA ARG SER GLY SEQRES 6 B 306 PRO PHE SER VAL SER GLU GLU ARG ALA SER ARG PHE GLY SEQRES 7 B 306 ALA ASP GLY PHE GLY GLY GLY THR ILE TYR TYR PRO ARG SEQRES 8 B 306 GLU ASN ASN THR TYR GLY ALA ILE ALA ILE SER PRO GLY SEQRES 9 B 306 TYR THR GLY THR GLN SER SER ILE ALA TRP LEU GLY GLU SEQRES 10 B 306 ARG ILE ALA SER HIS GLY PHE VAL VAL ILE ALA ILE ASP SEQRES 11 B 306 THR ASN THR THR LEU ASP GLN PRO ASP SER ARG ALA ARG SEQRES 12 B 306 GLN LEU ASN ALA ALA LEU ASP TYR MET LEU THR ASP ALA SEQRES 13 B 306 SER SER ALA VAL ARG ASN ARG ILE ASP ALA SER ARG LEU SEQRES 14 B 306 ALA VAL MET GLY HIS SER MET GLY GLY GLY GLY THR LEU SEQRES 15 B 306 ARG LEU ALA SER GLN ARG PRO ASP LEU LYS ALA ALA ILE SEQRES 16 B 306 PRO LEU THR PRO TRP HIS LEU ASN LYS SER TRP ARG ASP SEQRES 17 B 306 ILE THR VAL PRO THR LEU ILE ILE GLY ALA GLU TYR ASP SEQRES 18 B 306 THR ILE ALA SER VAL THR LEU HIS SER LYS PRO PHE TYR SEQRES 19 B 306 ASN SER ILE PRO SER PRO THR ASP LYS ALA TYR LEU GLU SEQRES 20 B 306 LEU ASP GLY ALA SER HIS PHE ALA PRO ASN ILE THR ASN SEQRES 21 B 306 LYS THR ILE GLY MET TYR SER VAL ALA TRP LEU LYS ARG SEQRES 22 B 306 PHE VAL ASP GLU ASP THR ARG TYR THR GLN PHE LEU CYS SEQRES 23 B 306 PRO GLY PRO ARG THR GLY LEU LEU SER ASP VAL GLU GLU SEQRES 24 B 306 TYR ARG SER THR CYS PRO PHE HET PE4 A 557 24 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 3 PE4 C16 H34 O8 FORMUL 4 HOH *454(H2 O) HELIX 1 1 THR A 50 ALA A 56 1 7 HELIX 2 2 THR A 102 SER A 115 1 14 HELIX 3 3 GLN A 131 ASP A 149 1 19 HELIX 4 4 SER A 151 ASN A 156 1 6 HELIX 5 5 SER A 169 ARG A 182 1 14 HELIX 6 6 HIS A 223 SER A 230 1 8 HELIX 7 7 PHE A 248 ILE A 252 5 5 HELIX 8 8 ASN A 254 ASP A 270 1 17 HELIX 9 9 ASP A 272 ARG A 274 5 3 HELIX 10 10 TYR A 275 CYS A 280 1 6 HELIX 11 11 THR B 50 ALA B 56 1 7 HELIX 12 12 THR B 102 SER B 115 1 14 HELIX 13 13 GLN B 131 ASP B 149 1 19 HELIX 14 14 SER B 151 ASN B 156 1 6 HELIX 15 15 SER B 169 ARG B 182 1 14 HELIX 16 16 HIS B 223 ILE B 231 1 9 HELIX 17 17 PHE B 248 ILE B 252 5 5 HELIX 18 18 ASN B 254 ASP B 270 1 17 HELIX 19 19 ASP B 272 ARG B 274 5 3 HELIX 20 20 TYR B 275 CYS B 280 1 6 SHEET 1 A 6 VAL A 63 ALA A 68 0 SHEET 2 A 6 GLY A 79 PRO A 84 -1 O ILE A 81 N GLU A 66 SHEET 3 A 6 PHE A 118 ILE A 123 -1 O VAL A 120 N TYR A 82 SHEET 4 A 6 TYR A 90 SER A 96 1 N ILE A 95 O ILE A 121 SHEET 5 A 6 ILE A 158 HIS A 168 1 O ASP A 159 N TYR A 90 SHEET 6 A 6 ALA A 187 LEU A 191 1 O LEU A 191 N GLY A 167 SHEET 1 B 3 THR A 207 ALA A 212 0 SHEET 2 B 3 LYS A 237 LEU A 242 1 O LEU A 242 N GLY A 211 SHEET 3 B 3 VAL A 291 SER A 296 -1 O ARG A 295 N TYR A 239 SHEET 1 C 6 VAL B 63 ALA B 68 0 SHEET 2 C 6 GLY B 79 PRO B 84 -1 O ILE B 81 N GLU B 66 SHEET 3 C 6 VAL B 119 ILE B 123 -1 O VAL B 120 N TYR B 82 SHEET 4 C 6 TYR B 90 SER B 96 1 N ILE B 95 O ILE B 121 SHEET 5 C 6 ILE B 158 HIS B 168 1 O ASP B 159 N TYR B 90 SHEET 6 C 6 ALA B 187 LEU B 191 1 O LEU B 191 N GLY B 167 SHEET 1 D 3 THR B 207 ALA B 212 0 SHEET 2 D 3 LYS B 237 LEU B 242 1 O LEU B 242 N GLY B 211 SHEET 3 D 3 VAL B 291 SER B 296 -1 O GLU B 292 N GLU B 241 SSBOND 1 CYS A 280 CYS A 298 1555 1555 2.07 SSBOND 2 CYS B 280 CYS B 298 1555 1555 2.13 CISPEP 1 SER A 233 PRO A 234 0 6.43 CISPEP 2 CYS A 280 PRO A 281 0 9.17 CISPEP 3 CYS A 298 PRO A 299 0 4.25 CISPEP 4 CYS B 280 PRO B 281 0 -0.44 CISPEP 5 CYS B 298 PRO B 299 0 -0.29 SITE 1 AC1 9 TYR A 99 THR A 100 ILE A 217 PHE A 248 SITE 2 AC1 9 HOH A 304 HOH A 448 HOH A 499 THR B 216 SITE 3 AC1 9 ILE B 217 CRYST1 100.989 88.732 71.794 90.00 133.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009902 0.000000 0.009242 0.00000 SCALE2 0.000000 0.011270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019053 0.00000