data_3VJR # _entry.id 3VJR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VJR pdb_00003vjr 10.2210/pdb3vjr/pdb NDB NA1381 ? ? RCSB RCSB095131 ? ? WWPDB D_1000095131 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VJR _pdbx_database_status.recvd_initial_deposition_date 2011-10-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ito, K.' 1 'Murakami, R.' 2 'Mochizuki, M.' 3 'Qi, H.' 4 'Shimizu, Y.' 5 'Miura, K.I.' 6 'Ueda, T.' 7 'Uchiumi, T.' 8 # _citation.id primary _citation.title 'Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 10521 _citation.page_last 10531 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22923517 _citation.pdbx_database_id_DOI 10.1093/nar/gks790 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ito, K.' 1 ? primary 'Murakami, R.' 2 ? primary 'Mochizuki, M.' 3 ? primary 'Qi, H.' 4 ? primary 'Shimizu, Y.' 5 ? primary 'Miura, K.' 6 ? primary 'Ueda, T.' 7 ? primary 'Uchiumi, T.' 8 ? # _cell.entry_id 3VJR _cell.length_a 55.070 _cell.length_b 55.070 _cell.length_c 413.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VJR _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-tRNA hydrolase' 21395.588 2 3.1.1.29 ? ? ? 2 polymer syn 'tRNA CCA-acceptor' 11532.882 2 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PTH # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAA MASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVS EQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ ; ;GSHMTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAA MASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVS EQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ ; A,C ? 2 polyribonucleotide no no GGGGGCUAAGCGGUUCGAUCCCGCUUAGCUCCACCA GGGGGCUAAGCGGUUCGAUCCCGCUUAGCUCCACCA B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 THR n 1 6 ILE n 1 7 LYS n 1 8 LEU n 1 9 ILE n 1 10 VAL n 1 11 GLY n 1 12 LEU n 1 13 ALA n 1 14 ASN n 1 15 PRO n 1 16 GLY n 1 17 ALA n 1 18 GLU n 1 19 TYR n 1 20 ALA n 1 21 ALA n 1 22 THR n 1 23 ARG n 1 24 HIS n 1 25 ASN n 1 26 ALA n 1 27 GLY n 1 28 ALA n 1 29 TRP n 1 30 PHE n 1 31 VAL n 1 32 ASP n 1 33 LEU n 1 34 LEU n 1 35 ALA n 1 36 GLU n 1 37 ARG n 1 38 LEU n 1 39 ARG n 1 40 ALA n 1 41 PRO n 1 42 LEU n 1 43 ARG n 1 44 GLU n 1 45 GLU n 1 46 ALA n 1 47 LYS n 1 48 PHE n 1 49 PHE n 1 50 GLY n 1 51 TYR n 1 52 THR n 1 53 SER n 1 54 ARG n 1 55 VAL n 1 56 THR n 1 57 LEU n 1 58 GLY n 1 59 GLY n 1 60 GLU n 1 61 ASP n 1 62 VAL n 1 63 ARG n 1 64 LEU n 1 65 LEU n 1 66 VAL n 1 67 PRO n 1 68 THR n 1 69 THR n 1 70 PHE n 1 71 MET n 1 72 ASN n 1 73 LEU n 1 74 SER n 1 75 GLY n 1 76 LYS n 1 77 ALA n 1 78 VAL n 1 79 ALA n 1 80 ALA n 1 81 MET n 1 82 ALA n 1 83 SER n 1 84 PHE n 1 85 PHE n 1 86 ARG n 1 87 ILE n 1 88 ASN n 1 89 PRO n 1 90 ASP n 1 91 GLU n 1 92 ILE n 1 93 LEU n 1 94 VAL n 1 95 ALA n 1 96 HIS n 1 97 ASP n 1 98 GLU n 1 99 LEU n 1 100 ASP n 1 101 LEU n 1 102 PRO n 1 103 PRO n 1 104 GLY n 1 105 VAL n 1 106 ALA n 1 107 LYS n 1 108 PHE n 1 109 LYS n 1 110 LEU n 1 111 GLY n 1 112 GLY n 1 113 GLY n 1 114 HIS n 1 115 GLY n 1 116 GLY n 1 117 HIS n 1 118 ASN n 1 119 GLY n 1 120 LEU n 1 121 LYS n 1 122 ASP n 1 123 ILE n 1 124 ILE n 1 125 SER n 1 126 LYS n 1 127 LEU n 1 128 GLY n 1 129 ASN n 1 130 ASN n 1 131 PRO n 1 132 ASN n 1 133 PHE n 1 134 HIS n 1 135 ARG n 1 136 LEU n 1 137 ARG n 1 138 ILE n 1 139 GLY n 1 140 ILE n 1 141 GLY n 1 142 HIS n 1 143 PRO n 1 144 GLY n 1 145 ASP n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 VAL n 1 151 GLY n 1 152 PHE n 1 153 VAL n 1 154 LEU n 1 155 GLY n 1 156 LYS n 1 157 PRO n 1 158 PRO n 1 159 VAL n 1 160 SER n 1 161 GLU n 1 162 GLN n 1 163 LYS n 1 164 LEU n 1 165 ILE n 1 166 ASP n 1 167 GLU n 1 168 ALA n 1 169 ILE n 1 170 ASP n 1 171 GLU n 1 172 ALA n 1 173 ALA n 1 174 ARG n 1 175 CYS n 1 176 THR n 1 177 GLU n 1 178 MET n 1 179 TRP n 1 180 PHE n 1 181 THR n 1 182 ASP n 1 183 GLY n 1 184 LEU n 1 185 THR n 1 186 LYS n 1 187 ALA n 1 188 THR n 1 189 ASN n 1 190 ARG n 1 191 LEU n 1 192 HIS n 1 193 ALA n 1 194 PHE n 1 195 LYS n 1 196 ALA n 1 197 GLN n 2 1 G n 2 2 G n 2 3 G n 2 4 G n 2 5 G n 2 6 C n 2 7 U n 2 8 A n 2 9 A n 2 10 G n 2 11 C n 2 12 G n 2 13 G n 2 14 U n 2 15 U n 2 16 C n 2 17 G n 2 18 A n 2 19 U n 2 20 C n 2 21 C n 2 22 C n 2 23 G n 2 24 C n 2 25 U n 2 26 U n 2 27 A n 2 28 G n 2 29 C n 2 30 U n 2 31 C n 2 32 C n 2 33 A n 2 34 C n 2 35 C n 2 36 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pth, b1204, JW1195' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA WAS REPEATED BY IN VITRO TRANSCRIPTION' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PTH_ECOLI P0A7D1 1 ;MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMAS FFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ ; 1 ? 2 PDB 3VJR 3VJR 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VJR A 4 ? 197 ? P0A7D1 1 ? 194 ? 4 197 2 1 3VJR C 4 ? 197 ? P0A7D1 1 ? 194 ? 4 197 3 2 3VJR B 1 ? 36 ? 3VJR 1 ? 36 ? 1 36 4 2 3VJR D 1 ? 36 ? 3VJR 1 ? 36 ? 1 36 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VJR GLY A 1 ? UNP P0A7D1 ? ? 'expression tag' 1 1 1 3VJR SER A 2 ? UNP P0A7D1 ? ? 'expression tag' 2 2 1 3VJR HIS A 3 ? UNP P0A7D1 ? ? 'expression tag' 3 3 2 3VJR GLY C 1 ? UNP P0A7D1 ? ? 'expression tag' 1 4 2 3VJR SER C 2 ? UNP P0A7D1 ? ? 'expression tag' 2 5 2 3VJR HIS C 3 ? UNP P0A7D1 ? ? 'expression tag' 3 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VJR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details ;100mM acetate buffer, 20% (w/v) 1,4-butanediol, 30mM glycyl-glycyl-glycine , pH 5.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-07-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3VJR _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.40 _reflns.number_obs 27129 _reflns.number_all 27129 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 24.94 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs 0.187 _reflns_shell.pdbx_Rsym_value 0.200 _reflns_shell.meanI_over_sigI_obs 8.2 _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4136 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VJR _refine.ls_number_reflns_obs 26216 _refine.ls_number_reflns_all 26216 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.19472 _refine.ls_R_factor_all 0.19472 _refine.ls_R_factor_R_work 0.19251 _refine.ls_R_factor_R_free 0.23657 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1390 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 47.222 _refine.aniso_B[1][1] 3.14 _refine.aniso_B[2][2] 3.14 _refine.aniso_B[3][3] -4.72 _refine.aniso_B[1][2] 1.57 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2PTH _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.243 _refine.overall_SU_ML 0.164 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.482 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2960 _refine_hist.pdbx_number_atoms_nucleic_acid 1532 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 4631 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.021 ? 4734 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.366 2.371 ? 6752 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.403 5.000 ? 384 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39.940 23.333 ? 132 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.800 15.000 ? 504 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17.257 15.000 ? 22 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.077 0.200 ? 810 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 3046 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.488 1.500 ? 1908 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.936 2.000 ? 3042 ? 'X-RAY DIFFRACTION' r_scbond_it 1.300 3.000 ? 2826 ? 'X-RAY DIFFRACTION' r_scangle_it 2.025 4.500 ? 3710 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.399 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 1865 _refine_ls_shell.R_factor_R_work 0.258 _refine_ls_shell.percent_reflns_obs 99.14 _refine_ls_shell.R_factor_R_free 0.341 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1968 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VJR _struct.title 'Crystal structure of Peptidyl-tRNA hydrolase from Escherichia coli in complex with the CCA-acceptor-T[PSI]C domain of tRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VJR _struct_keywords.pdbx_keywords hydrolase/RNA _struct_keywords.text 'Peptidyl-tRNA hydrolase, CCA-acceptor-T[PSI]C domain, seven beta-strands form, hydrolase-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? HIS A 24 ? THR A 22 HIS A 24 5 ? 3 HELX_P HELX_P2 2 ASN A 25 ? LEU A 38 ? ASN A 25 LEU A 38 1 ? 14 HELX_P HELX_P3 3 ALA A 46 ? PHE A 48 ? ALA A 46 PHE A 48 5 ? 3 HELX_P HELX_P4 4 PHE A 70 ? ASN A 72 ? PHE A 70 ASN A 72 5 ? 3 HELX_P HELX_P5 5 LEU A 73 ? ARG A 86 ? LEU A 73 ARG A 86 1 ? 14 HELX_P HELX_P6 6 ASN A 88 ? ASP A 90 ? ASN A 88 ASP A 90 5 ? 3 HELX_P HELX_P7 7 HIS A 117 ? LEU A 127 ? HIS A 117 LEU A 127 1 ? 11 HELX_P HELX_P8 8 ASP A 145 ? ASN A 147 ? ASP A 145 ASN A 147 5 ? 3 HELX_P HELX_P9 9 LYS A 148 ? LEU A 154 ? LYS A 148 LEU A 154 1 ? 7 HELX_P HELX_P10 10 PRO A 158 ? GLY A 183 ? PRO A 158 GLY A 183 1 ? 26 HELX_P HELX_P11 11 GLY A 183 ? HIS A 192 ? GLY A 183 HIS A 192 1 ? 10 HELX_P HELX_P12 12 GLY C 16 ? ALA C 20 ? GLY C 16 ALA C 20 5 ? 5 HELX_P HELX_P13 13 THR C 22 ? HIS C 24 ? THR C 22 HIS C 24 5 ? 3 HELX_P HELX_P14 14 ASN C 25 ? LEU C 38 ? ASN C 25 LEU C 38 1 ? 14 HELX_P HELX_P15 15 ALA C 46 ? PHE C 48 ? ALA C 46 PHE C 48 5 ? 3 HELX_P HELX_P16 16 PHE C 70 ? ASN C 72 ? PHE C 70 ASN C 72 5 ? 3 HELX_P HELX_P17 17 LEU C 73 ? ARG C 86 ? LEU C 73 ARG C 86 1 ? 14 HELX_P HELX_P18 18 ASN C 88 ? ASP C 90 ? ASN C 88 ASP C 90 5 ? 3 HELX_P HELX_P19 19 HIS C 117 ? LEU C 127 ? HIS C 117 LEU C 127 1 ? 11 HELX_P HELX_P20 20 ASP C 145 ? ASN C 147 ? ASP C 145 ASN C 147 5 ? 3 HELX_P HELX_P21 21 LYS C 148 ? LEU C 154 ? LYS C 148 LEU C 154 1 ? 7 HELX_P HELX_P22 22 PRO C 158 ? GLY C 183 ? PRO C 158 GLY C 183 1 ? 26 HELX_P HELX_P23 23 GLY C 183 ? HIS C 192 ? GLY C 183 HIS C 192 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 O6 ? ? ? 1_555 D C 34 N4 ? ? B G 2 D C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 31 N3 ? ? B G 3 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 31 O2 ? ? B G 3 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 31 N4 ? ? B G 3 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 3 O6 ? ? ? 1_555 D C 35 N4 ? ? B G 3 D C 35 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog9 hydrog ? ? B G 4 N1 ? ? ? 1_555 B U 30 O2 ? ? B G 4 B U 30 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? B G 4 O6 ? ? ? 1_555 B U 30 N3 ? ? B G 4 B U 30 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? B G 4 N7 ? ? ? 1_555 D A 36 N6 ? ? B G 4 D A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog12 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 27 N1 ? ? B U 7 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 27 N6 ? ? B U 7 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 26 N3 ? ? B A 8 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 26 O4 ? ? B A 8 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 25 N3 ? ? B A 9 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 25 O4 ? ? B A 9 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 24 N3 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 24 O2 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 24 N4 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 11 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 11 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 11 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 12 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 12 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 12 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 13 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 13 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 13 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 14 N3 ? ? ? 1_555 B A 18 N7 ? ? B U 14 B A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog37 hydrog ? ? B U 14 O2 ? ? ? 1_555 B A 18 N6 ? ? B U 14 B A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog38 hydrog ? ? B C 34 N4 ? ? ? 1_555 D G 2 O6 ? ? B C 34 D G 2 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog39 hydrog ? ? B C 35 N4 ? ? ? 1_555 D G 3 O6 ? ? B C 35 D G 3 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog40 hydrog ? ? B A 36 N6 ? ? ? 1_555 D G 4 N7 ? ? B A 36 D G 4 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog41 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 32 N3 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 32 O2 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 32 N4 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D G 3 N1 ? ? ? 1_555 D C 31 N3 ? ? D G 3 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D G 3 N2 ? ? ? 1_555 D C 31 O2 ? ? D G 3 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D G 3 O6 ? ? ? 1_555 D C 31 N4 ? ? D G 3 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D G 4 N1 ? ? ? 1_555 D U 30 O2 ? ? D G 4 D U 30 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? D G 4 O6 ? ? ? 1_555 D U 30 N3 ? ? D G 4 D U 30 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 29 N3 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 29 O2 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 29 N4 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D C 6 N3 ? ? ? 1_555 D G 28 N1 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D C 6 N4 ? ? ? 1_555 D G 28 O6 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D C 6 O2 ? ? ? 1_555 D G 28 N2 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D U 7 N3 ? ? ? 1_555 D A 27 N1 ? ? D U 7 D A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D U 7 O4 ? ? ? 1_555 D A 27 N6 ? ? D U 7 D A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D A 8 N1 ? ? ? 1_555 D U 26 N3 ? ? D A 8 D U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D A 8 N6 ? ? ? 1_555 D U 26 O4 ? ? D A 8 D U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D A 9 N1 ? ? ? 1_555 D U 25 N3 ? ? D A 9 D U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D A 9 N6 ? ? ? 1_555 D U 25 O4 ? ? D A 9 D U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? D G 10 N1 ? ? ? 1_555 D C 24 N3 ? ? D G 10 D C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? D G 10 N2 ? ? ? 1_555 D C 24 O2 ? ? D G 10 D C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? D G 10 O6 ? ? ? 1_555 D C 24 N4 ? ? D G 10 D C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? D C 11 N3 ? ? ? 1_555 D G 23 N1 ? ? D C 11 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? D C 11 N4 ? ? ? 1_555 D G 23 O6 ? ? D C 11 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? D C 11 O2 ? ? ? 1_555 D G 23 N2 ? ? D C 11 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? D G 12 N1 ? ? ? 1_555 D C 22 N3 ? ? D G 12 D C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? D G 12 N2 ? ? ? 1_555 D C 22 O2 ? ? D G 12 D C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? D G 12 O6 ? ? ? 1_555 D C 22 N4 ? ? D G 12 D C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? D G 13 N1 ? ? ? 1_555 D C 21 N3 ? ? D G 13 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? D G 13 N2 ? ? ? 1_555 D C 21 O2 ? ? D G 13 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? D G 13 O6 ? ? ? 1_555 D C 21 N4 ? ? D G 13 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? D U 14 N3 ? ? ? 1_555 D A 18 N7 ? ? D U 14 D A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog74 hydrog ? ? D U 14 O2 ? ? ? 1_555 D A 18 N6 ? ? D U 14 D A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 43 ? GLU A 45 ? ARG A 43 GLU A 45 A 2 GLY A 50 ? LEU A 57 ? GLY A 50 LEU A 57 A 3 GLU A 60 ? PRO A 67 ? GLU A 60 PRO A 67 A 4 LEU A 8 ? GLY A 11 ? LEU A 8 GLY A 11 A 5 ILE A 92 ? GLU A 98 ? ILE A 92 GLU A 98 A 6 HIS A 134 ? GLY A 139 ? HIS A 134 GLY A 139 A 7 ALA A 106 ? LEU A 110 ? ALA A 106 LEU A 110 B 1 ARG C 43 ? GLU C 45 ? ARG C 43 GLU C 45 B 2 GLY C 50 ? LEU C 57 ? GLY C 50 LEU C 57 B 3 GLU C 60 ? PRO C 67 ? GLU C 60 PRO C 67 B 4 LEU C 8 ? GLY C 11 ? LEU C 8 GLY C 11 B 5 ILE C 92 ? GLU C 98 ? ILE C 92 GLU C 98 B 6 HIS C 134 ? GLY C 139 ? HIS C 134 GLY C 139 B 7 ALA C 106 ? LEU C 110 ? ALA C 106 LEU C 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 45 ? N GLU A 45 O GLY A 50 ? O GLY A 50 A 2 3 N VAL A 55 ? N VAL A 55 O VAL A 62 ? O VAL A 62 A 3 4 O LEU A 65 ? O LEU A 65 N GLY A 11 ? N GLY A 11 A 4 5 N VAL A 10 ? N VAL A 10 O ALA A 95 ? O ALA A 95 A 5 6 N HIS A 96 ? N HIS A 96 O ILE A 138 ? O ILE A 138 A 6 7 O ARG A 137 ? O ARG A 137 N LYS A 107 ? N LYS A 107 B 1 2 N GLU C 45 ? N GLU C 45 O GLY C 50 ? O GLY C 50 B 2 3 N VAL C 55 ? N VAL C 55 O VAL C 62 ? O VAL C 62 B 3 4 O ARG C 63 ? O ARG C 63 N ILE C 9 ? N ILE C 9 B 4 5 N VAL C 10 ? N VAL C 10 O ALA C 95 ? O ALA C 95 B 5 6 N GLU C 98 ? N GLU C 98 O ILE C 138 ? O ILE C 138 B 6 7 O ARG C 137 ? O ARG C 137 N LYS C 107 ? N LYS C 107 # _database_PDB_matrix.entry_id 3VJR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VJR _atom_sites.fract_transf_matrix[1][1] 0.018159 _atom_sites.fract_transf_matrix[1][2] 0.010484 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020968 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002421 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 HIS 114 114 114 HIS HIS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 HIS 134 134 134 HIS HIS A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 MET 178 178 178 MET MET A . n A 1 179 TRP 179 179 179 TRP TRP A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 HIS 192 192 192 HIS HIS A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 GLN 197 197 197 GLN GLN A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 G 5 5 5 G G B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 A 8 8 8 A A B . n B 2 9 A 9 9 9 A A B . n B 2 10 G 10 10 10 G G B . n B 2 11 C 11 11 11 C C B . n B 2 12 G 12 12 12 G G B . n B 2 13 G 13 13 13 G G B . n B 2 14 U 14 14 14 U U B . n B 2 15 U 15 15 15 U U B . n B 2 16 C 16 16 16 C C B . n B 2 17 G 17 17 17 G G B . n B 2 18 A 18 18 18 A A B . n B 2 19 U 19 19 19 U U B . n B 2 20 C 20 20 20 C C B . n B 2 21 C 21 21 21 C C B . n B 2 22 C 22 22 22 C C B . n B 2 23 G 23 23 23 G G B . n B 2 24 C 24 24 24 C C B . n B 2 25 U 25 25 25 U U B . n B 2 26 U 26 26 26 U U B . n B 2 27 A 27 27 27 A A B . n B 2 28 G 28 28 28 G G B . n B 2 29 C 29 29 29 C C B . n B 2 30 U 30 30 30 U U B . n B 2 31 C 31 31 31 C C B . n B 2 32 C 32 32 32 C C B . n B 2 33 A 33 33 33 A A B . n B 2 34 C 34 34 34 C C B . n B 2 35 C 35 35 35 C C B . n B 2 36 A 36 36 36 A A B . n C 1 1 GLY 1 1 ? ? ? C . n C 1 2 SER 2 2 ? ? ? C . n C 1 3 HIS 3 3 ? ? ? C . n C 1 4 MET 4 4 ? ? ? C . n C 1 5 THR 5 5 5 THR THR C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 ILE 9 9 9 ILE ILE C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 GLY 11 11 11 GLY GLY C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 ALA 13 13 13 ALA ALA C . n C 1 14 ASN 14 14 14 ASN ASN C . n C 1 15 PRO 15 15 15 PRO PRO C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 GLU 18 18 18 GLU GLU C . n C 1 19 TYR 19 19 19 TYR TYR C . n C 1 20 ALA 20 20 20 ALA ALA C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 THR 22 22 22 THR THR C . n C 1 23 ARG 23 23 23 ARG ARG C . n C 1 24 HIS 24 24 24 HIS HIS C . n C 1 25 ASN 25 25 25 ASN ASN C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 GLY 27 27 27 GLY GLY C . n C 1 28 ALA 28 28 28 ALA ALA C . n C 1 29 TRP 29 29 29 TRP TRP C . n C 1 30 PHE 30 30 30 PHE PHE C . n C 1 31 VAL 31 31 31 VAL VAL C . n C 1 32 ASP 32 32 32 ASP ASP C . n C 1 33 LEU 33 33 33 LEU LEU C . n C 1 34 LEU 34 34 34 LEU LEU C . n C 1 35 ALA 35 35 35 ALA ALA C . n C 1 36 GLU 36 36 36 GLU GLU C . n C 1 37 ARG 37 37 37 ARG ARG C . n C 1 38 LEU 38 38 38 LEU LEU C . n C 1 39 ARG 39 39 39 ARG ARG C . n C 1 40 ALA 40 40 40 ALA ALA C . n C 1 41 PRO 41 41 41 PRO PRO C . n C 1 42 LEU 42 42 42 LEU LEU C . n C 1 43 ARG 43 43 43 ARG ARG C . n C 1 44 GLU 44 44 44 GLU GLU C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 ALA 46 46 46 ALA ALA C . n C 1 47 LYS 47 47 47 LYS LYS C . n C 1 48 PHE 48 48 48 PHE PHE C . n C 1 49 PHE 49 49 49 PHE PHE C . n C 1 50 GLY 50 50 50 GLY GLY C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 THR 52 52 52 THR THR C . n C 1 53 SER 53 53 53 SER SER C . n C 1 54 ARG 54 54 54 ARG ARG C . n C 1 55 VAL 55 55 55 VAL VAL C . n C 1 56 THR 56 56 56 THR THR C . n C 1 57 LEU 57 57 57 LEU LEU C . n C 1 58 GLY 58 58 58 GLY GLY C . n C 1 59 GLY 59 59 59 GLY GLY C . n C 1 60 GLU 60 60 60 GLU GLU C . n C 1 61 ASP 61 61 61 ASP ASP C . n C 1 62 VAL 62 62 62 VAL VAL C . n C 1 63 ARG 63 63 63 ARG ARG C . n C 1 64 LEU 64 64 64 LEU LEU C . n C 1 65 LEU 65 65 65 LEU LEU C . n C 1 66 VAL 66 66 66 VAL VAL C . n C 1 67 PRO 67 67 67 PRO PRO C . n C 1 68 THR 68 68 68 THR THR C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 PHE 70 70 70 PHE PHE C . n C 1 71 MET 71 71 71 MET MET C . n C 1 72 ASN 72 72 72 ASN ASN C . n C 1 73 LEU 73 73 73 LEU LEU C . n C 1 74 SER 74 74 74 SER SER C . n C 1 75 GLY 75 75 75 GLY GLY C . n C 1 76 LYS 76 76 76 LYS LYS C . n C 1 77 ALA 77 77 77 ALA ALA C . n C 1 78 VAL 78 78 78 VAL VAL C . n C 1 79 ALA 79 79 79 ALA ALA C . n C 1 80 ALA 80 80 80 ALA ALA C . n C 1 81 MET 81 81 81 MET MET C . n C 1 82 ALA 82 82 82 ALA ALA C . n C 1 83 SER 83 83 83 SER SER C . n C 1 84 PHE 84 84 84 PHE PHE C . n C 1 85 PHE 85 85 85 PHE PHE C . n C 1 86 ARG 86 86 86 ARG ARG C . n C 1 87 ILE 87 87 87 ILE ILE C . n C 1 88 ASN 88 88 88 ASN ASN C . n C 1 89 PRO 89 89 89 PRO PRO C . n C 1 90 ASP 90 90 90 ASP ASP C . n C 1 91 GLU 91 91 91 GLU GLU C . n C 1 92 ILE 92 92 92 ILE ILE C . n C 1 93 LEU 93 93 93 LEU LEU C . n C 1 94 VAL 94 94 94 VAL VAL C . n C 1 95 ALA 95 95 95 ALA ALA C . n C 1 96 HIS 96 96 96 HIS HIS C . n C 1 97 ASP 97 97 97 ASP ASP C . n C 1 98 GLU 98 98 98 GLU GLU C . n C 1 99 LEU 99 99 99 LEU LEU C . n C 1 100 ASP 100 100 100 ASP ASP C . n C 1 101 LEU 101 101 101 LEU LEU C . n C 1 102 PRO 102 102 102 PRO PRO C . n C 1 103 PRO 103 103 103 PRO PRO C . n C 1 104 GLY 104 104 104 GLY GLY C . n C 1 105 VAL 105 105 105 VAL VAL C . n C 1 106 ALA 106 106 106 ALA ALA C . n C 1 107 LYS 107 107 107 LYS LYS C . n C 1 108 PHE 108 108 108 PHE PHE C . n C 1 109 LYS 109 109 109 LYS LYS C . n C 1 110 LEU 110 110 110 LEU LEU C . n C 1 111 GLY 111 111 111 GLY GLY C . n C 1 112 GLY 112 112 112 GLY GLY C . n C 1 113 GLY 113 113 113 GLY GLY C . n C 1 114 HIS 114 114 114 HIS HIS C . n C 1 115 GLY 115 115 115 GLY GLY C . n C 1 116 GLY 116 116 116 GLY GLY C . n C 1 117 HIS 117 117 117 HIS HIS C . n C 1 118 ASN 118 118 118 ASN ASN C . n C 1 119 GLY 119 119 119 GLY GLY C . n C 1 120 LEU 120 120 120 LEU LEU C . n C 1 121 LYS 121 121 121 LYS LYS C . n C 1 122 ASP 122 122 122 ASP ASP C . n C 1 123 ILE 123 123 123 ILE ILE C . n C 1 124 ILE 124 124 124 ILE ILE C . n C 1 125 SER 125 125 125 SER SER C . n C 1 126 LYS 126 126 126 LYS LYS C . n C 1 127 LEU 127 127 127 LEU LEU C . n C 1 128 GLY 128 128 128 GLY GLY C . n C 1 129 ASN 129 129 129 ASN ASN C . n C 1 130 ASN 130 130 130 ASN ASN C . n C 1 131 PRO 131 131 131 PRO PRO C . n C 1 132 ASN 132 132 132 ASN ASN C . n C 1 133 PHE 133 133 133 PHE PHE C . n C 1 134 HIS 134 134 134 HIS HIS C . n C 1 135 ARG 135 135 135 ARG ARG C . n C 1 136 LEU 136 136 136 LEU LEU C . n C 1 137 ARG 137 137 137 ARG ARG C . n C 1 138 ILE 138 138 138 ILE ILE C . n C 1 139 GLY 139 139 139 GLY GLY C . n C 1 140 ILE 140 140 140 ILE ILE C . n C 1 141 GLY 141 141 141 GLY GLY C . n C 1 142 HIS 142 142 142 HIS HIS C . n C 1 143 PRO 143 143 143 PRO PRO C . n C 1 144 GLY 144 144 144 GLY GLY C . n C 1 145 ASP 145 145 145 ASP ASP C . n C 1 146 LYS 146 146 146 LYS LYS C . n C 1 147 ASN 147 147 147 ASN ASN C . n C 1 148 LYS 148 148 148 LYS LYS C . n C 1 149 VAL 149 149 149 VAL VAL C . n C 1 150 VAL 150 150 150 VAL VAL C . n C 1 151 GLY 151 151 151 GLY GLY C . n C 1 152 PHE 152 152 152 PHE PHE C . n C 1 153 VAL 153 153 153 VAL VAL C . n C 1 154 LEU 154 154 154 LEU LEU C . n C 1 155 GLY 155 155 155 GLY GLY C . n C 1 156 LYS 156 156 156 LYS LYS C . n C 1 157 PRO 157 157 157 PRO PRO C . n C 1 158 PRO 158 158 158 PRO PRO C . n C 1 159 VAL 159 159 159 VAL VAL C . n C 1 160 SER 160 160 160 SER SER C . n C 1 161 GLU 161 161 161 GLU GLU C . n C 1 162 GLN 162 162 162 GLN GLN C . n C 1 163 LYS 163 163 163 LYS LYS C . n C 1 164 LEU 164 164 164 LEU LEU C . n C 1 165 ILE 165 165 165 ILE ILE C . n C 1 166 ASP 166 166 166 ASP ASP C . n C 1 167 GLU 167 167 167 GLU GLU C . n C 1 168 ALA 168 168 168 ALA ALA C . n C 1 169 ILE 169 169 169 ILE ILE C . n C 1 170 ASP 170 170 170 ASP ASP C . n C 1 171 GLU 171 171 171 GLU GLU C . n C 1 172 ALA 172 172 172 ALA ALA C . n C 1 173 ALA 173 173 173 ALA ALA C . n C 1 174 ARG 174 174 174 ARG ARG C . n C 1 175 CYS 175 175 175 CYS CYS C . n C 1 176 THR 176 176 176 THR THR C . n C 1 177 GLU 177 177 177 GLU GLU C . n C 1 178 MET 178 178 178 MET MET C . n C 1 179 TRP 179 179 179 TRP TRP C . n C 1 180 PHE 180 180 180 PHE PHE C . n C 1 181 THR 181 181 181 THR THR C . n C 1 182 ASP 182 182 182 ASP ASP C . n C 1 183 GLY 183 183 183 GLY GLY C . n C 1 184 LEU 184 184 184 LEU LEU C . n C 1 185 THR 185 185 185 THR THR C . n C 1 186 LYS 186 186 186 LYS LYS C . n C 1 187 ALA 187 187 187 ALA ALA C . n C 1 188 THR 188 188 188 THR THR C . n C 1 189 ASN 189 189 189 ASN ASN C . n C 1 190 ARG 190 190 190 ARG ARG C . n C 1 191 LEU 191 191 191 LEU LEU C . n C 1 192 HIS 192 192 192 HIS HIS C . n C 1 193 ALA 193 193 193 ALA ALA C . n C 1 194 PHE 194 194 194 PHE PHE C . n C 1 195 LYS 195 195 195 LYS LYS C . n C 1 196 ALA 196 196 196 ALA ALA C . n C 1 197 GLN 197 197 197 GLN GLN C . n D 2 1 G 1 1 1 G G D . n D 2 2 G 2 2 2 G G D . n D 2 3 G 3 3 3 G G D . n D 2 4 G 4 4 4 G G D . n D 2 5 G 5 5 5 G G D . n D 2 6 C 6 6 6 C C D . n D 2 7 U 7 7 7 U U D . n D 2 8 A 8 8 8 A A D . n D 2 9 A 9 9 9 A A D . n D 2 10 G 10 10 10 G G D . n D 2 11 C 11 11 11 C C D . n D 2 12 G 12 12 12 G G D . n D 2 13 G 13 13 13 G G D . n D 2 14 U 14 14 14 U U D . n D 2 15 U 15 15 15 U U D . n D 2 16 C 16 16 16 C C D . n D 2 17 G 17 17 17 G G D . n D 2 18 A 18 18 18 A A D . n D 2 19 U 19 19 19 U U D . n D 2 20 C 20 20 20 C C D . n D 2 21 C 21 21 21 C C D . n D 2 22 C 22 22 22 C C D . n D 2 23 G 23 23 23 G G D . n D 2 24 C 24 24 24 C C D . n D 2 25 U 25 25 25 U U D . n D 2 26 U 26 26 26 U U D . n D 2 27 A 27 27 27 A A D . n D 2 28 G 28 28 28 G G D . n D 2 29 C 29 29 29 C C D . n D 2 30 U 30 30 30 U U D . n D 2 31 C 31 31 31 C C D . n D 2 32 C 32 32 32 C C D . n D 2 33 A 33 33 33 A A D . n D 2 34 C 34 34 34 C C D . n D 2 35 C 35 35 35 C C D . n D 2 36 A 36 36 36 A A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 198 1 HOH HOH A . E 3 HOH 2 199 3 HOH HOH A . E 3 HOH 3 200 4 HOH HOH A . E 3 HOH 4 201 6 HOH HOH A . E 3 HOH 5 202 11 HOH HOH A . E 3 HOH 6 203 14 HOH HOH A . E 3 HOH 7 204 17 HOH HOH A . E 3 HOH 8 205 18 HOH HOH A . E 3 HOH 9 206 24 HOH HOH A . E 3 HOH 10 207 30 HOH HOH A . E 3 HOH 11 208 34 HOH HOH A . E 3 HOH 12 209 38 HOH HOH A . E 3 HOH 13 210 39 HOH HOH A . E 3 HOH 14 211 40 HOH HOH A . E 3 HOH 15 212 41 HOH HOH A . E 3 HOH 16 213 47 HOH HOH A . E 3 HOH 17 214 50 HOH HOH A . E 3 HOH 18 215 55 HOH HOH A . E 3 HOH 19 216 56 HOH HOH A . E 3 HOH 20 217 60 HOH HOH A . E 3 HOH 21 218 62 HOH HOH A . E 3 HOH 22 219 68 HOH HOH A . E 3 HOH 23 220 70 HOH HOH A . E 3 HOH 24 221 72 HOH HOH A . E 3 HOH 25 222 75 HOH HOH A . E 3 HOH 26 223 76 HOH HOH A . E 3 HOH 27 224 80 HOH HOH A . E 3 HOH 28 225 84 HOH HOH A . E 3 HOH 29 226 85 HOH HOH A . E 3 HOH 30 227 91 HOH HOH A . E 3 HOH 31 228 94 HOH HOH A . E 3 HOH 32 229 95 HOH HOH A . E 3 HOH 33 230 97 HOH HOH A . E 3 HOH 34 231 101 HOH HOH A . E 3 HOH 35 232 104 HOH HOH A . E 3 HOH 36 233 107 HOH HOH A . E 3 HOH 37 234 110 HOH HOH A . E 3 HOH 38 235 113 HOH HOH A . E 3 HOH 39 236 116 HOH HOH A . E 3 HOH 40 237 118 HOH HOH A . E 3 HOH 41 238 122 HOH HOH A . E 3 HOH 42 239 125 HOH HOH A . E 3 HOH 43 240 128 HOH HOH A . E 3 HOH 44 241 130 HOH HOH A . E 3 HOH 45 242 133 HOH HOH A . E 3 HOH 46 243 135 HOH HOH A . E 3 HOH 47 244 7 HOH HOH A . F 3 HOH 1 39 16 HOH HOH B . F 3 HOH 2 40 22 HOH HOH B . F 3 HOH 3 41 33 HOH HOH B . F 3 HOH 4 42 42 HOH HOH B . F 3 HOH 5 43 36 HOH HOH B . F 3 HOH 6 48 48 HOH HOH B . F 3 HOH 7 52 52 HOH HOH B . F 3 HOH 8 54 54 HOH HOH B . F 3 HOH 9 61 61 HOH HOH B . F 3 HOH 10 66 66 HOH HOH B . F 3 HOH 11 83 83 HOH HOH B . F 3 HOH 12 87 87 HOH HOH B . F 3 HOH 13 89 89 HOH HOH B . F 3 HOH 14 90 90 HOH HOH B . F 3 HOH 15 102 102 HOH HOH B . F 3 HOH 16 112 112 HOH HOH B . F 3 HOH 17 127 127 HOH HOH B . F 3 HOH 18 129 129 HOH HOH B . F 3 HOH 19 136 136 HOH HOH B . G 3 HOH 1 198 2 HOH HOH C . G 3 HOH 2 199 5 HOH HOH C . G 3 HOH 3 200 12 HOH HOH C . G 3 HOH 4 201 13 HOH HOH C . G 3 HOH 5 202 15 HOH HOH C . G 3 HOH 6 203 19 HOH HOH C . G 3 HOH 7 204 20 HOH HOH C . G 3 HOH 8 205 21 HOH HOH C . G 3 HOH 9 206 25 HOH HOH C . G 3 HOH 10 207 26 HOH HOH C . G 3 HOH 11 208 28 HOH HOH C . G 3 HOH 12 209 29 HOH HOH C . G 3 HOH 13 210 31 HOH HOH C . G 3 HOH 14 211 32 HOH HOH C . G 3 HOH 15 212 35 HOH HOH C . G 3 HOH 16 213 37 HOH HOH C . G 3 HOH 17 214 46 HOH HOH C . G 3 HOH 18 215 49 HOH HOH C . G 3 HOH 19 216 51 HOH HOH C . G 3 HOH 20 217 53 HOH HOH C . G 3 HOH 21 218 57 HOH HOH C . G 3 HOH 22 219 58 HOH HOH C . G 3 HOH 23 220 64 HOH HOH C . G 3 HOH 24 221 65 HOH HOH C . G 3 HOH 25 222 67 HOH HOH C . G 3 HOH 26 223 69 HOH HOH C . G 3 HOH 27 224 71 HOH HOH C . G 3 HOH 28 225 74 HOH HOH C . G 3 HOH 29 226 77 HOH HOH C . G 3 HOH 30 227 86 HOH HOH C . G 3 HOH 31 228 92 HOH HOH C . G 3 HOH 32 229 93 HOH HOH C . G 3 HOH 33 230 105 HOH HOH C . G 3 HOH 34 231 106 HOH HOH C . G 3 HOH 35 232 108 HOH HOH C . G 3 HOH 36 233 109 HOH HOH C . G 3 HOH 37 234 111 HOH HOH C . G 3 HOH 38 235 114 HOH HOH C . G 3 HOH 39 236 119 HOH HOH C . G 3 HOH 40 237 120 HOH HOH C . G 3 HOH 41 238 123 HOH HOH C . G 3 HOH 42 239 124 HOH HOH C . G 3 HOH 43 240 126 HOH HOH C . G 3 HOH 44 241 131 HOH HOH C . G 3 HOH 45 242 132 HOH HOH C . G 3 HOH 46 243 134 HOH HOH C . G 3 HOH 47 244 137 HOH HOH C . G 3 HOH 48 245 139 HOH HOH C . H 3 HOH 1 37 9 HOH HOH D . H 3 HOH 2 38 8 HOH HOH D . H 3 HOH 3 39 23 HOH HOH D . H 3 HOH 4 40 27 HOH HOH D . H 3 HOH 5 41 10 HOH HOH D . H 3 HOH 6 43 43 HOH HOH D . H 3 HOH 7 44 44 HOH HOH D . H 3 HOH 8 45 45 HOH HOH D . H 3 HOH 9 59 59 HOH HOH D . H 3 HOH 10 63 63 HOH HOH D . H 3 HOH 11 73 73 HOH HOH D . H 3 HOH 12 78 78 HOH HOH D . H 3 HOH 13 79 79 HOH HOH D . H 3 HOH 14 81 81 HOH HOH D . H 3 HOH 15 82 82 HOH HOH D . H 3 HOH 16 88 88 HOH HOH D . H 3 HOH 17 96 96 HOH HOH D . H 3 HOH 18 98 98 HOH HOH D . H 3 HOH 19 99 99 HOH HOH D . H 3 HOH 20 100 100 HOH HOH D . H 3 HOH 21 103 103 HOH HOH D . H 3 HOH 22 115 115 HOH HOH D . H 3 HOH 23 117 117 HOH HOH D . H 3 HOH 24 121 121 HOH HOH D . H 3 HOH 25 138 138 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4000 ? 1 MORE -40 ? 1 'SSA (A^2)' 27680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-12 2 'Structure model' 1 1 2013-06-26 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -22.0767 9.7909 1.8265 0.1583 0.0651 0.1091 -0.0843 0.0331 -0.0293 1.5136 2.1424 2.3370 0.0314 -0.1376 -0.0523 -0.1280 0.0327 -0.0498 -0.0500 -0.0328 0.1025 0.1958 0.0641 0.1608 'X-RAY DIFFRACTION' 2 ? refined -18.2249 32.5519 -3.2730 0.1711 0.1066 0.1483 -0.0706 -0.0307 -0.0034 0.5798 0.4911 2.7715 0.0607 0.2617 1.0366 0.0302 0.0382 0.1209 -0.0403 -0.0637 -0.0696 -0.2018 -0.2191 0.0335 'X-RAY DIFFRACTION' 3 ? refined -30.1164 23.6566 -40.8329 0.0214 0.2131 0.1143 -0.0020 0.0181 -0.0442 2.0477 1.7453 2.2009 -0.1790 0.2290 0.0951 -0.0381 -0.0871 -0.0674 -0.0041 -0.1207 0.1046 -0.1642 -0.1366 0.1588 'X-RAY DIFFRACTION' 4 ? refined -8.3464 15.5810 -35.8746 0.1107 0.2262 0.1663 -0.0043 0.0131 0.0121 0.5600 0.2889 2.4748 0.1822 -1.0296 -0.2584 -0.0676 0.0038 0.0179 0.0541 0.0151 -0.1417 0.3393 0.0477 0.0525 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 5 ? ? A 197 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 36 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 5 ? ? C 197 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 1 ? ? D 36 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B G 1 ? ? OP3 B G 1 ? ? 1.471 1.607 -0.136 0.012 N 2 1 P D G 1 ? ? OP3 D G 1 ? ? 1.464 1.607 -0.143 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" B G 2 ? ? "C3'" B G 2 ? ? "C2'" B G 2 ? ? 95.12 102.60 -7.48 1.00 N 2 1 "O4'" B C 31 ? ? "C1'" B C 31 ? ? N1 B C 31 ? ? 113.17 108.50 4.67 0.70 N 3 1 "C4'" D G 2 ? ? "C3'" D G 2 ? ? "C2'" D G 2 ? ? 96.33 102.60 -6.27 1.00 N 4 1 "O4'" D C 6 ? ? "C1'" D C 6 ? ? N1 D C 6 ? ? 112.99 108.50 4.49 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP C 90 ? ? -69.91 1.01 2 1 LYS C 148 ? ? -99.22 32.76 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 C GLY 1 ? C GLY 1 6 1 Y 1 C SER 2 ? C SER 2 7 1 Y 1 C HIS 3 ? C HIS 3 8 1 Y 1 C MET 4 ? C MET 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 PHE N N N N 360 PHE CA C N S 361 PHE C C N N 362 PHE O O N N 363 PHE CB C N N 364 PHE CG C Y N 365 PHE CD1 C Y N 366 PHE CD2 C Y N 367 PHE CE1 C Y N 368 PHE CE2 C Y N 369 PHE CZ C Y N 370 PHE OXT O N N 371 PHE H H N N 372 PHE H2 H N N 373 PHE HA H N N 374 PHE HB2 H N N 375 PHE HB3 H N N 376 PHE HD1 H N N 377 PHE HD2 H N N 378 PHE HE1 H N N 379 PHE HE2 H N N 380 PHE HZ H N N 381 PHE HXT H N N 382 PRO N N N N 383 PRO CA C N S 384 PRO C C N N 385 PRO O O N N 386 PRO CB C N N 387 PRO CG C N N 388 PRO CD C N N 389 PRO OXT O N N 390 PRO H H N N 391 PRO HA H N N 392 PRO HB2 H N N 393 PRO HB3 H N N 394 PRO HG2 H N N 395 PRO HG3 H N N 396 PRO HD2 H N N 397 PRO HD3 H N N 398 PRO HXT H N N 399 SER N N N N 400 SER CA C N S 401 SER C C N N 402 SER O O N N 403 SER CB C N N 404 SER OG O N N 405 SER OXT O N N 406 SER H H N N 407 SER H2 H N N 408 SER HA H N N 409 SER HB2 H N N 410 SER HB3 H N N 411 SER HG H N N 412 SER HXT H N N 413 THR N N N N 414 THR CA C N S 415 THR C C N N 416 THR O O N N 417 THR CB C N R 418 THR OG1 O N N 419 THR CG2 C N N 420 THR OXT O N N 421 THR H H N N 422 THR H2 H N N 423 THR HA H N N 424 THR HB H N N 425 THR HG1 H N N 426 THR HG21 H N N 427 THR HG22 H N N 428 THR HG23 H N N 429 THR HXT H N N 430 TRP N N N N 431 TRP CA C N S 432 TRP C C N N 433 TRP O O N N 434 TRP CB C N N 435 TRP CG C Y N 436 TRP CD1 C Y N 437 TRP CD2 C Y N 438 TRP NE1 N Y N 439 TRP CE2 C Y N 440 TRP CE3 C Y N 441 TRP CZ2 C Y N 442 TRP CZ3 C Y N 443 TRP CH2 C Y N 444 TRP OXT O N N 445 TRP H H N N 446 TRP H2 H N N 447 TRP HA H N N 448 TRP HB2 H N N 449 TRP HB3 H N N 450 TRP HD1 H N N 451 TRP HE1 H N N 452 TRP HE3 H N N 453 TRP HZ2 H N N 454 TRP HZ3 H N N 455 TRP HH2 H N N 456 TRP HXT H N N 457 TYR N N N N 458 TYR CA C N S 459 TYR C C N N 460 TYR O O N N 461 TYR CB C N N 462 TYR CG C Y N 463 TYR CD1 C Y N 464 TYR CD2 C Y N 465 TYR CE1 C Y N 466 TYR CE2 C Y N 467 TYR CZ C Y N 468 TYR OH O N N 469 TYR OXT O N N 470 TYR H H N N 471 TYR H2 H N N 472 TYR HA H N N 473 TYR HB2 H N N 474 TYR HB3 H N N 475 TYR HD1 H N N 476 TYR HD2 H N N 477 TYR HE1 H N N 478 TYR HE2 H N N 479 TYR HH H N N 480 TYR HXT H N N 481 U OP3 O N N 482 U P P N N 483 U OP1 O N N 484 U OP2 O N N 485 U "O5'" O N N 486 U "C5'" C N N 487 U "C4'" C N R 488 U "O4'" O N N 489 U "C3'" C N S 490 U "O3'" O N N 491 U "C2'" C N R 492 U "O2'" O N N 493 U "C1'" C N R 494 U N1 N N N 495 U C2 C N N 496 U O2 O N N 497 U N3 N N N 498 U C4 C N N 499 U O4 O N N 500 U C5 C N N 501 U C6 C N N 502 U HOP3 H N N 503 U HOP2 H N N 504 U "H5'" H N N 505 U "H5''" H N N 506 U "H4'" H N N 507 U "H3'" H N N 508 U "HO3'" H N N 509 U "H2'" H N N 510 U "HO2'" H N N 511 U "H1'" H N N 512 U H3 H N N 513 U H5 H N N 514 U H6 H N N 515 VAL N N N N 516 VAL CA C N S 517 VAL C C N N 518 VAL O O N N 519 VAL CB C N N 520 VAL CG1 C N N 521 VAL CG2 C N N 522 VAL OXT O N N 523 VAL H H N N 524 VAL H2 H N N 525 VAL HA H N N 526 VAL HB H N N 527 VAL HG11 H N N 528 VAL HG12 H N N 529 VAL HG13 H N N 530 VAL HG21 H N N 531 VAL HG22 H N N 532 VAL HG23 H N N 533 VAL HXT H N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TRP N CA sing N N 421 TRP N H sing N N 422 TRP N H2 sing N N 423 TRP CA C sing N N 424 TRP CA CB sing N N 425 TRP CA HA sing N N 426 TRP C O doub N N 427 TRP C OXT sing N N 428 TRP CB CG sing N N 429 TRP CB HB2 sing N N 430 TRP CB HB3 sing N N 431 TRP CG CD1 doub Y N 432 TRP CG CD2 sing Y N 433 TRP CD1 NE1 sing Y N 434 TRP CD1 HD1 sing N N 435 TRP CD2 CE2 doub Y N 436 TRP CD2 CE3 sing Y N 437 TRP NE1 CE2 sing Y N 438 TRP NE1 HE1 sing N N 439 TRP CE2 CZ2 sing Y N 440 TRP CE3 CZ3 doub Y N 441 TRP CE3 HE3 sing N N 442 TRP CZ2 CH2 doub Y N 443 TRP CZ2 HZ2 sing N N 444 TRP CZ3 CH2 sing Y N 445 TRP CZ3 HZ3 sing N N 446 TRP CH2 HH2 sing N N 447 TRP OXT HXT sing N N 448 TYR N CA sing N N 449 TYR N H sing N N 450 TYR N H2 sing N N 451 TYR CA C sing N N 452 TYR CA CB sing N N 453 TYR CA HA sing N N 454 TYR C O doub N N 455 TYR C OXT sing N N 456 TYR CB CG sing N N 457 TYR CB HB2 sing N N 458 TYR CB HB3 sing N N 459 TYR CG CD1 doub Y N 460 TYR CG CD2 sing Y N 461 TYR CD1 CE1 sing Y N 462 TYR CD1 HD1 sing N N 463 TYR CD2 CE2 doub Y N 464 TYR CD2 HD2 sing N N 465 TYR CE1 CZ doub Y N 466 TYR CE1 HE1 sing N N 467 TYR CE2 CZ sing Y N 468 TYR CE2 HE2 sing N N 469 TYR CZ OH sing N N 470 TYR OH HH sing N N 471 TYR OXT HXT sing N N 472 U OP3 P sing N N 473 U OP3 HOP3 sing N N 474 U P OP1 doub N N 475 U P OP2 sing N N 476 U P "O5'" sing N N 477 U OP2 HOP2 sing N N 478 U "O5'" "C5'" sing N N 479 U "C5'" "C4'" sing N N 480 U "C5'" "H5'" sing N N 481 U "C5'" "H5''" sing N N 482 U "C4'" "O4'" sing N N 483 U "C4'" "C3'" sing N N 484 U "C4'" "H4'" sing N N 485 U "O4'" "C1'" sing N N 486 U "C3'" "O3'" sing N N 487 U "C3'" "C2'" sing N N 488 U "C3'" "H3'" sing N N 489 U "O3'" "HO3'" sing N N 490 U "C2'" "O2'" sing N N 491 U "C2'" "C1'" sing N N 492 U "C2'" "H2'" sing N N 493 U "O2'" "HO2'" sing N N 494 U "C1'" N1 sing N N 495 U "C1'" "H1'" sing N N 496 U N1 C2 sing N N 497 U N1 C6 sing N N 498 U C2 O2 doub N N 499 U C2 N3 sing N N 500 U N3 C4 sing N N 501 U N3 H3 sing N N 502 U C4 O4 doub N N 503 U C4 C5 sing N N 504 U C5 C6 doub N N 505 U C5 H5 sing N N 506 U C6 H6 sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VJR 'double helix' 3VJR 'a-form double helix' 3VJR 'hairpin loop' 3VJR 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 2 1_555 B C 32 1_555 -0.300 -0.176 -0.222 -6.423 -3.592 -1.448 1 B_G2:C32_B B 2 ? B 32 ? 19 1 1 B G 3 1_555 B C 31 1_555 -0.267 -0.147 -0.158 -5.605 -7.770 -1.536 2 B_G3:C31_B B 3 ? B 31 ? 19 1 1 B G 4 1_555 B U 30 1_555 -2.560 -0.496 0.303 0.707 -12.617 2.713 3 B_G4:U30_B B 4 ? B 30 ? 28 1 1 B G 5 1_555 B C 29 1_555 -0.142 0.021 0.309 2.674 -11.916 1.978 4 B_G5:C29_B B 5 ? B 29 ? 19 1 1 B C 6 1_555 B G 28 1_555 0.480 -0.020 0.097 1.492 -13.766 5.444 5 B_C6:G28_B B 6 ? B 28 ? 19 1 1 B U 7 1_555 B A 27 1_555 0.060 -0.026 0.242 -0.984 -12.290 4.799 6 B_U7:A27_B B 7 ? B 27 ? 20 1 1 B A 8 1_555 B U 26 1_555 -0.090 -0.009 0.204 -0.367 -17.412 7.280 7 B_A8:U26_B B 8 ? B 26 ? 20 1 1 B A 9 1_555 B U 25 1_555 -0.862 -0.133 0.133 -0.558 -14.116 2.149 8 B_A9:U25_B B 9 ? B 25 ? 20 1 1 B G 10 1_555 B C 24 1_555 -0.340 -0.009 -0.055 -8.629 -16.108 5.186 9 B_G10:C24_B B 10 ? B 24 ? 19 1 1 B C 11 1_555 B G 23 1_555 0.837 -0.217 0.371 -6.955 -9.082 2.807 10 B_C11:G23_B B 11 ? B 23 ? 19 1 1 B G 12 1_555 B C 22 1_555 -0.124 -0.037 -0.057 0.859 -2.900 4.700 11 B_G12:C22_B B 12 ? B 22 ? 19 1 1 B G 13 1_555 B C 21 1_555 0.012 -0.229 -0.343 -10.422 -6.177 1.234 12 B_G13:C21_B B 13 ? B 21 ? 19 1 1 B U 14 1_555 B A 18 1_555 4.215 -2.165 0.095 4.213 7.536 -96.576 13 B_U14:A18_B B 14 ? B 18 ? 24 4 1 D G 2 1_555 D C 32 1_555 -0.521 -0.193 -0.242 -6.562 -1.369 -1.440 14 D_G2:C32_D D 2 ? D 32 ? 19 1 1 D G 3 1_555 D C 31 1_555 -0.132 -0.134 -0.214 -4.367 -6.251 -2.909 15 D_G3:C31_D D 3 ? D 31 ? 19 1 1 D G 4 1_555 D U 30 1_555 -2.479 -0.416 0.412 3.513 -12.122 1.644 16 D_G4:U30_D D 4 ? D 30 ? 28 1 1 D G 5 1_555 D C 29 1_555 -0.177 -0.060 0.258 1.754 -14.212 1.936 17 D_G5:C29_D D 5 ? D 29 ? 19 1 1 D C 6 1_555 D G 28 1_555 0.560 -0.042 0.007 2.980 -12.455 2.762 18 D_C6:G28_D D 6 ? D 28 ? 19 1 1 D U 7 1_555 D A 27 1_555 0.074 -0.023 0.163 0.454 -10.897 6.551 19 D_U7:A27_D D 7 ? D 27 ? 20 1 1 D A 8 1_555 D U 26 1_555 -0.123 -0.100 0.285 -0.788 -15.991 6.100 20 D_A8:U26_D D 8 ? D 26 ? 20 1 1 D A 9 1_555 D U 25 1_555 -1.081 -0.168 0.216 -0.260 -18.311 1.846 21 D_A9:U25_D D 9 ? D 25 ? 20 1 1 D G 10 1_555 D C 24 1_555 -0.193 0.004 -0.070 -5.849 -13.942 4.710 22 D_G10:C24_D D 10 ? D 24 ? 19 1 1 D C 11 1_555 D G 23 1_555 0.995 -0.249 0.155 -4.128 -10.347 3.404 23 D_C11:G23_D D 11 ? D 23 ? 19 1 1 D G 12 1_555 D C 22 1_555 -0.183 -0.009 0.048 1.742 -3.408 5.585 24 D_G12:C22_D D 12 ? D 22 ? 19 1 1 D G 13 1_555 D C 21 1_555 -0.103 -0.213 -0.365 -9.556 -7.388 -0.310 25 D_G13:C21_D D 13 ? D 21 ? 19 1 1 D U 14 1_555 D A 18 1_555 4.245 -2.188 0.099 4.421 7.124 -98.089 26 D_U14:A18_D D 14 ? D 18 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 2 1_555 B C 32 1_555 B G 3 1_555 B C 31 1_555 -0.332 -2.406 3.308 0.859 1.459 25.130 -5.941 1.010 3.152 3.349 -1.971 25.187 1 BB_G2G3:C31C32_BB B 2 ? B 32 ? B 3 ? B 31 ? 1 B G 3 1_555 B C 31 1_555 B G 4 1_555 B U 30 1_555 0.171 -2.152 2.909 -3.977 2.616 24.510 -5.643 -1.405 2.609 6.088 9.256 24.961 2 BB_G3G4:U30C31_BB B 3 ? B 31 ? B 4 ? B 30 ? 1 B G 4 1_555 B U 30 1_555 B G 5 1_555 B C 29 1_555 0.016 -1.511 3.210 -1.905 3.303 38.494 -2.672 -0.250 3.071 4.995 2.881 38.675 3 BB_G4G5:C29U30_BB B 4 ? B 30 ? B 5 ? B 29 ? 1 B G 5 1_555 B C 29 1_555 B C 6 1_555 B G 28 1_555 0.644 -1.912 3.199 3.942 2.388 32.998 -3.721 -0.487 3.111 4.178 -6.898 33.310 4 BB_G5C6:G28C29_BB B 5 ? B 29 ? B 6 ? B 28 ? 1 B C 6 1_555 B G 28 1_555 B U 7 1_555 B A 27 1_555 -0.493 -2.137 3.098 -1.055 9.970 27.415 -6.068 0.787 2.217 20.199 2.138 29.157 5 BB_C6U7:A27G28_BB B 6 ? B 28 ? B 7 ? B 27 ? 1 B U 7 1_555 B A 27 1_555 B A 8 1_555 B U 26 1_555 -0.177 -1.406 3.145 -0.044 10.437 29.526 -4.368 0.321 2.515 19.719 0.083 31.278 6 BB_U7A8:U26A27_BB B 7 ? B 27 ? B 8 ? B 26 ? 1 B A 8 1_555 B U 26 1_555 B A 9 1_555 B U 25 1_555 -0.056 -1.315 3.127 -1.967 10.356 29.877 -4.121 -0.222 2.540 19.345 3.674 31.642 7 BB_A8A9:U25U26_BB B 8 ? B 26 ? B 9 ? B 25 ? 1 B A 9 1_555 B U 25 1_555 B G 10 1_555 B C 24 1_555 0.475 -1.487 3.334 1.268 12.937 34.007 -4.090 -0.594 2.629 21.183 -2.076 36.338 8 BB_A9G10:C24U25_BB B 9 ? B 25 ? B 10 ? B 24 ? 1 B G 10 1_555 B C 24 1_555 B C 11 1_555 B G 23 1_555 0.124 -1.437 3.236 -0.977 4.678 36.208 -2.915 -0.327 3.029 7.487 1.564 36.512 9 BB_G10C11:G23C24_BB B 10 ? B 24 ? B 11 ? B 23 ? 1 B C 11 1_555 B G 23 1_555 B G 12 1_555 B C 22 1_555 0.340 -1.917 2.928 4.076 4.600 24.762 -5.463 0.222 2.558 10.522 -9.322 25.502 10 BB_C11G12:C22G23_BB B 11 ? B 23 ? B 12 ? B 22 ? 1 B G 12 1_555 B C 22 1_555 B G 13 1_555 B C 21 1_555 0.497 -2.269 3.626 2.259 3.671 32.878 -4.641 -0.462 3.386 6.451 -3.969 33.152 11 BB_G12G13:C21C22_BB B 12 ? B 22 ? B 13 ? B 21 ? 1 B G 13 1_555 B C 21 1_555 B U 14 1_555 B A 18 1_555 -2.148 -2.743 3.205 -4.803 -3.343 86.854 -1.918 1.455 3.379 -2.429 3.490 87.012 12 BB_G13U14:A18C21_BB B 13 ? B 21 ? B 14 ? B 18 ? 1 D G 2 1_555 D C 32 1_555 D G 3 1_555 D C 31 1_555 -0.326 -2.390 3.310 1.226 1.275 26.578 -5.519 1.027 3.175 2.769 -2.663 26.636 13 DD_G2G3:C31C32_DD D 2 ? D 32 ? D 3 ? D 31 ? 1 D G 3 1_555 D C 31 1_555 D G 4 1_555 D U 30 1_555 0.240 -2.176 2.860 -4.639 1.744 24.545 -5.458 -1.717 2.612 4.049 10.771 25.033 14 DD_G3G4:U30C31_DD D 3 ? D 31 ? D 4 ? D 30 ? 1 D G 4 1_555 D U 30 1_555 D G 5 1_555 D C 29 1_555 0.094 -1.556 3.301 -0.137 5.398 38.071 -3.020 -0.159 3.059 8.225 0.208 38.438 15 DD_G4G5:C29U30_DD D 4 ? D 30 ? D 5 ? D 29 ? 1 D G 5 1_555 D C 29 1_555 D C 6 1_555 D G 28 1_555 0.590 -1.879 3.121 3.740 1.925 33.807 -3.498 -0.443 3.058 3.295 -6.401 34.060 16 DD_G5C6:G28C29_DD D 5 ? D 29 ? D 6 ? D 28 ? 1 D C 6 1_555 D G 28 1_555 D U 7 1_555 D A 27 1_555 -0.300 -2.129 3.161 -1.173 9.854 26.395 -6.345 0.382 2.247 20.674 2.461 28.168 17 DD_C6U7:A27G28_DD D 6 ? D 28 ? D 7 ? D 27 ? 1 D U 7 1_555 D A 27 1_555 D A 8 1_555 D U 26 1_555 -0.314 -1.395 3.154 -1.090 11.786 30.148 -4.359 0.393 2.459 21.640 2.001 32.338 18 DD_U7A8:U26A27_DD D 7 ? D 27 ? D 8 ? D 26 ? 1 D A 8 1_555 D U 26 1_555 D A 9 1_555 D U 25 1_555 -0.007 -1.300 3.077 -1.244 9.727 29.386 -4.091 -0.198 2.526 18.536 2.370 30.945 19 DD_A8A9:U25U26_DD D 8 ? D 26 ? D 9 ? D 25 ? 1 D A 9 1_555 D U 25 1_555 D G 10 1_555 D C 24 1_555 0.345 -1.424 3.301 1.069 12.939 35.676 -3.751 -0.403 2.653 20.309 -1.677 37.892 20 DD_A9G10:C24U25_DD D 9 ? D 25 ? D 10 ? D 24 ? 1 D G 10 1_555 D C 24 1_555 D C 11 1_555 D G 23 1_555 0.090 -1.438 3.266 0.580 4.349 35.772 -2.926 -0.066 3.077 7.048 -0.939 36.031 21 DD_G10C11:G23C24_DD D 10 ? D 24 ? D 11 ? D 23 ? 1 D C 11 1_555 D G 23 1_555 D G 12 1_555 D C 22 1_555 0.534 -1.914 3.022 2.851 4.552 22.913 -6.037 -0.467 2.642 11.260 -7.053 23.526 22 DD_C11G12:C22G23_DD D 11 ? D 23 ? D 12 ? D 22 ? 1 D G 12 1_555 D C 22 1_555 D G 13 1_555 D C 21 1_555 0.413 -2.202 3.590 3.339 4.524 32.872 -4.636 -0.132 3.291 7.921 -5.848 33.337 23 DD_G12G13:C21C22_DD D 12 ? D 22 ? D 13 ? D 21 ? 1 D G 13 1_555 D C 21 1_555 D U 14 1_555 D A 18 1_555 -2.088 -2.881 3.299 -4.984 -3.220 87.639 -2.006 1.395 3.473 -2.323 3.596 87.799 24 DD_G13U14:A18C21_DD D 13 ? D 21 ? D 14 ? D 18 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PTH _pdbx_initial_refinement_model.details ? #