HEADER DNA BINDING PROTEIN 01-NOV-11 3VK0 TITLE CRYSTAL STRUCTURE OF HYPOTHETICAL TRANSCRIPTION FACTOR NHTF FROM TITLE 2 NEISSERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NHTF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: NMB1204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HTH MOTIF, XRE TRANSCRIPTION FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.-C.WANG,T.-P.KO,M.-L.WU,H.-J.WU,S.-C.KU,A.H.-J.WANG REVDAT 3 08-NOV-23 3VK0 1 SEQADV REVDAT 2 22-NOV-17 3VK0 1 REMARK REVDAT 1 14-MAR-12 3VK0 0 JRNL AUTH H.-C.WANG,T.-P.KO,M.-L.WU,S.-C.KU,H.-J.WU,A.H.-J.WANG JRNL TITL NEISSERIA CONSERVED PROTEIN DMP19 IS A DNA MIMIC PROTEIN JRNL TITL 2 THAT PREVENTS DNA BINDING TO A HYPOTHETICAL JRNL TITL 3 NITROGEN-RESPONSE TRANSCRIPTION FACTOR JRNL REF NUCLEIC ACIDS RES. 2012 JRNL REFN ESSN 1362-4962 JRNL PMID 22373915 JRNL DOI 10.1093/NAR/GKS177 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : 2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.469 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2150 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2904 ; 1.574 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;33.600 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;16.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1593 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 1.147 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2105 ; 1.984 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 831 ; 3.212 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 799 ; 5.125 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5981 51.9706 35.9403 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6687 32.0936 39.5107 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 91 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2407 17.2488 23.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000095140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.72M SODIUM FORMATE, 9% PEG8000, 9% REMARK 280 PEG1000, 100MM SODIUM ACETATE, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.50650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.44950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.50650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.44950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -38.10915 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.50432 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 231 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 SER A 94 REMARK 465 ALA A 95 REMARK 465 ASP A 96 REMARK 465 THR A 97 REMARK 465 ARG A 98 REMARK 465 GLN A 99 REMARK 465 MET A 100 REMARK 465 PRO A 101 REMARK 465 SER A 102 REMARK 465 GLU A 103 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 ILE A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 THR B 92 REMARK 465 ASN B 93 REMARK 465 SER B 94 REMARK 465 ALA B 95 REMARK 465 ASP B 96 REMARK 465 THR B 97 REMARK 465 ARG B 98 REMARK 465 GLN B 99 REMARK 465 MET B 100 REMARK 465 PRO B 101 REMARK 465 SER B 102 REMARK 465 GLU B 103 REMARK 465 SER B 104 REMARK 465 GLY B 105 REMARK 465 ILE B 106 REMARK 465 LEU B 107 REMARK 465 GLU B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 GLY C 3 REMARK 465 ASN C 4 REMARK 465 ASN C 93 REMARK 465 SER C 94 REMARK 465 ALA C 95 REMARK 465 ASP C 96 REMARK 465 THR C 97 REMARK 465 ARG C 98 REMARK 465 GLN C 99 REMARK 465 MET C 100 REMARK 465 PRO C 101 REMARK 465 SER C 102 REMARK 465 GLU C 103 REMARK 465 SER C 104 REMARK 465 GLY C 105 REMARK 465 ILE C 106 REMARK 465 LEU C 107 REMARK 465 GLU C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 HIS C 113 REMARK 465 HIS C 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 44 CB CYS A 44 SG -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VJZ RELATED DB: PDB DBREF 3VK0 A 1 106 UNP Q7DDD9 Q7DDD9_NEIMB 1 106 DBREF 3VK0 B 1 106 UNP Q7DDD9 Q7DDD9_NEIMB 1 106 DBREF 3VK0 C 1 106 UNP Q7DDD9 Q7DDD9_NEIMB 1 106 SEQADV 3VK0 LEU A 107 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 GLU A 108 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 109 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 110 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 111 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 112 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 113 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS A 114 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 LEU B 107 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 GLU B 108 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 109 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 110 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 111 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 112 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 113 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS B 114 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 LEU C 107 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 GLU C 108 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 109 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 110 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 111 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 112 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 113 UNP Q7DDD9 EXPRESSION TAG SEQADV 3VK0 HIS C 114 UNP Q7DDD9 EXPRESSION TAG SEQRES 1 A 114 MET MET GLY ASN LYS LEU THR LEU PRO ALA GLU LEU PRO SEQRES 2 A 114 ASP GLU GLN ASP LEU ARG ALA VAL LEU ALA TYR ASN MET SEQRES 3 A 114 ARG LEU PHE ARG VAL ASN LYS GLY TRP SER GLN GLU GLU SEQRES 4 A 114 LEU ALA ARG GLN CYS GLY LEU ASP ARG THR TYR VAL SER SEQRES 5 A 114 ALA VAL GLU ARG LYS ARG TRP ASN ILE ALA LEU SER ASN SEQRES 6 A 114 ILE GLU LYS MET ALA ALA ALA LEU GLY VAL ALA ALA TYR SEQRES 7 A 114 GLN LEU LEU LEU PRO PRO GLN GLU ARG LEU LYS LEU MET SEQRES 8 A 114 THR ASN SER ALA ASP THR ARG GLN MET PRO SER GLU SER SEQRES 9 A 114 GLY ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 114 MET MET GLY ASN LYS LEU THR LEU PRO ALA GLU LEU PRO SEQRES 2 B 114 ASP GLU GLN ASP LEU ARG ALA VAL LEU ALA TYR ASN MET SEQRES 3 B 114 ARG LEU PHE ARG VAL ASN LYS GLY TRP SER GLN GLU GLU SEQRES 4 B 114 LEU ALA ARG GLN CYS GLY LEU ASP ARG THR TYR VAL SER SEQRES 5 B 114 ALA VAL GLU ARG LYS ARG TRP ASN ILE ALA LEU SER ASN SEQRES 6 B 114 ILE GLU LYS MET ALA ALA ALA LEU GLY VAL ALA ALA TYR SEQRES 7 B 114 GLN LEU LEU LEU PRO PRO GLN GLU ARG LEU LYS LEU MET SEQRES 8 B 114 THR ASN SER ALA ASP THR ARG GLN MET PRO SER GLU SER SEQRES 9 B 114 GLY ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 114 MET MET GLY ASN LYS LEU THR LEU PRO ALA GLU LEU PRO SEQRES 2 C 114 ASP GLU GLN ASP LEU ARG ALA VAL LEU ALA TYR ASN MET SEQRES 3 C 114 ARG LEU PHE ARG VAL ASN LYS GLY TRP SER GLN GLU GLU SEQRES 4 C 114 LEU ALA ARG GLN CYS GLY LEU ASP ARG THR TYR VAL SER SEQRES 5 C 114 ALA VAL GLU ARG LYS ARG TRP ASN ILE ALA LEU SER ASN SEQRES 6 C 114 ILE GLU LYS MET ALA ALA ALA LEU GLY VAL ALA ALA TYR SEQRES 7 C 114 GLN LEU LEU LEU PRO PRO GLN GLU ARG LEU LYS LEU MET SEQRES 8 C 114 THR ASN SER ALA ASP THR ARG GLN MET PRO SER GLU SER SEQRES 9 C 114 GLY ILE LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *239(H2 O) HELIX 1 1 ASP A 17 LYS A 33 1 17 HELIX 2 2 SER A 36 GLY A 45 1 10 HELIX 3 3 ASP A 47 GLU A 55 1 9 HELIX 4 4 ALA A 62 GLY A 74 1 13 HELIX 5 5 ALA A 76 LEU A 81 1 6 HELIX 6 6 PRO A 83 ASN A 93 1 11 HELIX 7 7 ASP B 17 LYS B 33 1 17 HELIX 8 8 SER B 36 GLY B 45 1 10 HELIX 9 9 ASP B 47 ARG B 56 1 10 HELIX 10 10 ALA B 62 GLY B 74 1 13 HELIX 11 11 ALA B 76 LEU B 82 5 7 HELIX 12 12 PRO B 83 LEU B 90 1 8 HELIX 13 13 ASP C 17 LYS C 33 1 17 HELIX 14 14 SER C 36 GLY C 45 1 10 HELIX 15 15 ASP C 47 ARG C 56 1 10 HELIX 16 16 ALA C 62 GLY C 74 1 13 HELIX 17 17 ALA C 76 LEU C 81 1 6 HELIX 18 18 PRO C 83 THR C 92 1 10 CRYST1 75.013 108.899 44.083 90.00 115.61 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013331 0.000000 0.006389 0.00000 SCALE2 0.000000 0.009183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025155 0.00000