HEADER TRANSFERASE 12-NOV-11 3VKD TITLE CRYSTAL STRUCTURE OF MOEO5 SOAKED WITH 3-PHOSPHOGLYCERATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOEO5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-CIS,TRANS-FARNESYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GHANAENSIS; SOURCE 3 ORGANISM_TAXID: 566461; SOURCE 4 STRAIN: ATCC 14672; SOURCE 5 GENE: MOEO5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC KEYWDS TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.REN,T.-P.KO,C.-H.HUANG,R.-T.GUO REVDAT 4 08-NOV-23 3VKD 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 3VKD 1 REMARK REVDAT 2 29-APR-15 3VKD 1 JRNL REVDAT 1 09-MAY-12 3VKD 0 JRNL AUTH F.REN,T.-P.KO,X.FENG,C.-H.HUANG,H.-C.CHAN,Y.HU,K.WANG,Y.MA, JRNL AUTH 2 P.-H.LIANG,A.H.-J.WANG,E.OLDFIELD,R.-T.GUO JRNL TITL INSIGHTS INTO THE MECHANISM OF THE ANTIBIOTIC-SYNTHESIZING JRNL TITL 2 ENZYME MOEO5 FROM CRYSTAL STRUCTURES OF DIFFERENT COMPLEXES JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 4157 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22431288 JRNL DOI 10.1002/ANIE.201108002 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 59609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1789 REMARK 3 BIN FREE R VALUE : 0.2202 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90400 REMARK 3 B22 (A**2) : -1.54200 REMARK 3 B33 (A**2) : 0.63700 REMARK 3 B12 (A**2) : -1.39100 REMARK 3 B13 (A**2) : 1.23800 REMARK 3 B23 (A**2) : 0.15700 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.255 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.862 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.016 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 45.24 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000095153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 3VK5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M NA-MALONATE, 10MM REMARK 280 MGCL2, 20MM 3-PHOSPHOGLYCERATE, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 LEU A 13 REMARK 465 HIS A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 269 REMARK 465 ARG A 270 REMARK 465 PRO A 271 REMARK 465 ALA A 272 REMARK 465 ALA A 273 REMARK 465 PRO A 274 REMARK 465 ALA A 275 REMARK 465 ARG A 276 REMARK 465 PRO A 277 REMARK 465 GLY A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 ARG A 281 REMARK 465 ALA B -4 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 THR B 11 REMARK 465 GLU B 12 REMARK 465 LEU B 13 REMARK 465 HIS B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 ARG B 269 REMARK 465 ARG B 270 REMARK 465 PRO B 271 REMARK 465 ALA B 272 REMARK 465 ALA B 273 REMARK 465 PRO B 274 REMARK 465 ALA B 275 REMARK 465 ARG B 276 REMARK 465 PRO B 277 REMARK 465 GLY B 278 REMARK 465 SER B 279 REMARK 465 GLY B 280 REMARK 465 ARG B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 21 O HOH A 295 1.76 REMARK 500 O PRO A 18 O HOH A 295 1.87 REMARK 500 NH1 ARG B 21 O HOH B 409 1.96 REMARK 500 O PRO B 18 O HOH B 417 2.00 REMARK 500 O HOH A 344 O HOH A 526 2.02 REMARK 500 NE ARG B 21 O HOH B 417 2.12 REMARK 500 O HOH B 388 O HOH B 489 2.13 REMARK 500 OD1 ASP A 258 O HOH A 291 2.16 REMARK 500 O HOH A 370 O HOH A 371 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 19 -107.27 51.09 REMARK 500 ALA A 104 -33.92 -132.27 REMARK 500 TRP A 130 -16.45 -165.95 REMARK 500 ASP A 163 78.40 -161.27 REMARK 500 GLU A 205 -152.98 -130.82 REMARK 500 GLU A 255 57.11 -92.99 REMARK 500 ASP A 258 35.96 -89.84 REMARK 500 LEU B 19 -109.28 54.79 REMARK 500 TRP B 130 -16.08 -166.20 REMARK 500 ASP B 163 77.78 -160.98 REMARK 500 GLU B 205 -150.76 -135.75 REMARK 500 ASP B 258 36.47 -90.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 800 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 137 O REMARK 620 2 ALA A 138 O 78.6 REMARK 620 3 PHE A 140 O 94.7 87.8 REMARK 620 4 LEU B 137 O 71.2 104.0 159.0 REMARK 620 5 ALA B 138 O 102.7 178.1 90.6 77.9 REMARK 620 6 PHE B 140 O 157.2 90.6 105.0 92.4 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 OD2 REMARK 620 2 SER B 69 OG 96.5 REMARK 620 3 ASP B 71 OD1 176.7 84.3 REMARK 620 4 HOH B 355 O 86.8 91.2 90.1 REMARK 620 5 HOH B 484 O 77.3 167.6 102.4 99.1 REMARK 620 6 PO4 B 802 O2 80.8 80.8 102.4 164.3 87.6 REMARK 620 7 PO4 B 802 O3 113.0 116.7 69.2 142.1 57.8 53.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPQ A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPQ B 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VK5 RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 3VKA RELATED DB: PDB REMARK 900 SOAKED WITH FSPP FOR 3 HOURS REMARK 900 RELATED ID: 3VKB RELATED DB: PDB REMARK 900 SOAKED WITH FSPP OVERNIGHT REMARK 900 RELATED ID: 3VKC RELATED DB: PDB REMARK 900 SOAKED WITH PYROPHOSPHATE DBREF 3VKD A 1 281 UNP A0A011 A0A011_9ACTO 1 281 DBREF 3VKD B 1 281 UNP A0A011 A0A011_9ACTO 1 281 SEQADV 3VKD ALA A -4 UNP A0A011 EXPRESSION TAG SEQADV 3VKD GLY A -3 UNP A0A011 EXPRESSION TAG SEQADV 3VKD ALA A -2 UNP A0A011 EXPRESSION TAG SEQADV 3VKD GLY A -1 UNP A0A011 EXPRESSION TAG SEQADV 3VKD ALA A 0 UNP A0A011 EXPRESSION TAG SEQADV 3VKD ALA B -4 UNP A0A011 EXPRESSION TAG SEQADV 3VKD GLY B -3 UNP A0A011 EXPRESSION TAG SEQADV 3VKD ALA B -2 UNP A0A011 EXPRESSION TAG SEQADV 3VKD GLY B -1 UNP A0A011 EXPRESSION TAG SEQADV 3VKD ALA B 0 UNP A0A011 EXPRESSION TAG SEQRES 1 A 286 ALA GLY ALA GLY ALA MET ASN ALA SER PRO GLN LEU ASP SEQRES 2 A 286 HIS HIS THR GLU LEU HIS ALA ALA PRO PRO LEU TRP ARG SEQRES 3 A 286 PRO GLY ARG VAL LEU ALA ARG LEU ARG GLU HIS GLN PRO SEQRES 4 A 286 GLY PRO VAL HIS ILE ILE ASP PRO PHE LYS VAL PRO VAL SEQRES 5 A 286 THR GLU ALA VAL GLU LYS ALA ALA GLU LEU THR ARG LEU SEQRES 6 A 286 GLY PHE ALA ALA VAL LEU LEU ALA SER THR ASP TYR GLU SEQRES 7 A 286 SER PHE GLU SER HIS MET GLU PRO TYR VAL ALA ALA VAL SEQRES 8 A 286 LYS ALA ALA THR PRO LEU PRO VAL VAL LEU HIS PHE PRO SEQRES 9 A 286 PRO ARG PRO GLY ALA GLY PHE PRO VAL VAL ARG GLY ALA SEQRES 10 A 286 ASP ALA LEU LEU LEU PRO ALA LEU LEU GLY SER GLY ASP SEQRES 11 A 286 ASP TYR PHE VAL TRP LYS SER PHE LEU GLU THR LEU ALA SEQRES 12 A 286 ALA PHE PRO GLY ARG ILE PRO ARG GLU GLU TRP PRO GLU SEQRES 13 A 286 LEU LEU LEU THR VAL ALA LEU THR PHE GLY GLU ASP PRO SEQRES 14 A 286 ARG THR GLY ASP LEU LEU GLY THR VAL PRO VAL SER THR SEQRES 15 A 286 ALA SER THR GLU GLU ILE ASP ARG TYR LEU HIS VAL ALA SEQRES 16 A 286 ARG ALA PHE GLY PHE HIS MET VAL TYR LEU TYR SER ARG SEQRES 17 A 286 ASN GLU HIS VAL PRO PRO GLU VAL VAL ARG HIS PHE ARG SEQRES 18 A 286 LYS GLY LEU GLY PRO ASP GLN VAL LEU PHE VAL SER GLY SEQRES 19 A 286 ASN VAL ARG SER GLY ARG GLN VAL THR GLU TYR LEU ASP SEQRES 20 A 286 SER GLY ALA ASP TYR VAL GLY PHE ALA GLY ALA LEU GLU SEQRES 21 A 286 GLN PRO ASP TRP ARG SER ALA LEU ALA GLU ILE ALA GLY SEQRES 22 A 286 ARG ARG PRO ALA ALA PRO ALA ARG PRO GLY SER GLY ARG SEQRES 1 B 286 ALA GLY ALA GLY ALA MET ASN ALA SER PRO GLN LEU ASP SEQRES 2 B 286 HIS HIS THR GLU LEU HIS ALA ALA PRO PRO LEU TRP ARG SEQRES 3 B 286 PRO GLY ARG VAL LEU ALA ARG LEU ARG GLU HIS GLN PRO SEQRES 4 B 286 GLY PRO VAL HIS ILE ILE ASP PRO PHE LYS VAL PRO VAL SEQRES 5 B 286 THR GLU ALA VAL GLU LYS ALA ALA GLU LEU THR ARG LEU SEQRES 6 B 286 GLY PHE ALA ALA VAL LEU LEU ALA SER THR ASP TYR GLU SEQRES 7 B 286 SER PHE GLU SER HIS MET GLU PRO TYR VAL ALA ALA VAL SEQRES 8 B 286 LYS ALA ALA THR PRO LEU PRO VAL VAL LEU HIS PHE PRO SEQRES 9 B 286 PRO ARG PRO GLY ALA GLY PHE PRO VAL VAL ARG GLY ALA SEQRES 10 B 286 ASP ALA LEU LEU LEU PRO ALA LEU LEU GLY SER GLY ASP SEQRES 11 B 286 ASP TYR PHE VAL TRP LYS SER PHE LEU GLU THR LEU ALA SEQRES 12 B 286 ALA PHE PRO GLY ARG ILE PRO ARG GLU GLU TRP PRO GLU SEQRES 13 B 286 LEU LEU LEU THR VAL ALA LEU THR PHE GLY GLU ASP PRO SEQRES 14 B 286 ARG THR GLY ASP LEU LEU GLY THR VAL PRO VAL SER THR SEQRES 15 B 286 ALA SER THR GLU GLU ILE ASP ARG TYR LEU HIS VAL ALA SEQRES 16 B 286 ARG ALA PHE GLY PHE HIS MET VAL TYR LEU TYR SER ARG SEQRES 17 B 286 ASN GLU HIS VAL PRO PRO GLU VAL VAL ARG HIS PHE ARG SEQRES 18 B 286 LYS GLY LEU GLY PRO ASP GLN VAL LEU PHE VAL SER GLY SEQRES 19 B 286 ASN VAL ARG SER GLY ARG GLN VAL THR GLU TYR LEU ASP SEQRES 20 B 286 SER GLY ALA ASP TYR VAL GLY PHE ALA GLY ALA LEU GLU SEQRES 21 B 286 GLN PRO ASP TRP ARG SER ALA LEU ALA GLU ILE ALA GLY SEQRES 22 B 286 ARG ARG PRO ALA ALA PRO ALA ARG PRO GLY SER GLY ARG HET MG A 800 1 HET FPQ A 900 26 HET MG B 801 1 HET PO4 B 802 5 HET FPQ B 900 26 HETNAM MG MAGNESIUM ION HETNAM FPQ (2R)-3-(PHOSPHONOOXY)-2-{[(2Z,6E)-3,7,11- HETNAM 2 FPQ TRIMETHYLDODECA-2,6,10-TRIEN-1-YL]OXY}PROPANOIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 FPQ 2(C18 H31 O7 P) FORMUL 6 PO4 O4 P 3- FORMUL 8 HOH *470(H2 O) HELIX 1 1 GLY A 23 HIS A 32 1 10 HELIX 2 2 PRO A 46 LEU A 60 1 15 HELIX 3 3 SER A 74 THR A 90 1 17 HELIX 4 4 ASP A 125 TRP A 130 1 6 HELIX 5 5 TRP A 130 PHE A 140 1 11 HELIX 6 6 PRO A 145 TRP A 149 5 5 HELIX 7 7 ASP A 163 GLY A 171 1 9 HELIX 8 8 THR A 180 PHE A 193 1 14 HELIX 9 9 PRO A 208 LEU A 219 1 12 HELIX 10 10 SER A 233 SER A 243 1 11 HELIX 11 11 ALA A 251 GLU A 255 5 5 HELIX 12 12 ASP A 258 GLY A 268 1 11 HELIX 13 13 GLY B 23 HIS B 32 1 10 HELIX 14 14 PRO B 46 GLY B 61 1 16 HELIX 15 15 SER B 74 THR B 90 1 17 HELIX 16 16 ASP B 125 TRP B 130 1 6 HELIX 17 17 TRP B 130 PHE B 140 1 11 HELIX 18 18 PRO B 145 TRP B 149 5 5 HELIX 19 19 ASP B 163 GLY B 171 1 9 HELIX 20 20 THR B 180 PHE B 193 1 14 HELIX 21 21 PRO B 208 LEU B 219 1 12 HELIX 22 22 SER B 233 SER B 243 1 11 HELIX 23 23 ALA B 251 GLU B 255 5 5 HELIX 24 24 ASP B 258 ALA B 267 1 10 SHEET 1 A 9 GLY A 35 ILE A 40 0 SHEET 2 A 9 VAL A 65 ALA A 68 1 O LEU A 66 N ILE A 40 SHEET 3 A 9 VAL A 94 HIS A 97 1 O VAL A 95 N VAL A 65 SHEET 4 A 9 ALA A 114 ALA A 119 1 O LEU A 116 N LEU A 96 SHEET 5 A 9 GLU A 151 THR A 159 1 O THR A 155 N ALA A 119 SHEET 6 A 9 MET A 197 TYR A 201 1 O TYR A 199 N VAL A 156 SHEET 7 A 9 VAL A 224 SER A 228 1 O PHE A 226 N VAL A 198 SHEET 8 A 9 TYR A 247 PHE A 250 1 O GLY A 249 N VAL A 227 SHEET 9 A 9 GLY A 35 ILE A 40 1 N ILE A 39 O PHE A 250 SHEET 1 B 9 GLY B 35 ILE B 40 0 SHEET 2 B 9 VAL B 65 ALA B 68 1 O LEU B 66 N ILE B 40 SHEET 3 B 9 VAL B 94 HIS B 97 1 O VAL B 95 N VAL B 65 SHEET 4 B 9 ALA B 114 ALA B 119 1 O LEU B 116 N LEU B 96 SHEET 5 B 9 GLU B 151 THR B 159 1 O THR B 155 N ALA B 119 SHEET 6 B 9 MET B 197 TYR B 201 1 O TYR B 199 N VAL B 156 SHEET 7 B 9 VAL B 224 SER B 228 1 O PHE B 226 N VAL B 198 SHEET 8 B 9 TYR B 247 PHE B 250 1 O GLY B 249 N VAL B 227 SHEET 9 B 9 GLY B 35 ILE B 40 1 N ILE B 39 O PHE B 250 LINK O LEU A 137 MG MG A 800 1555 1555 2.56 LINK O ALA A 138 MG MG A 800 1555 1555 2.53 LINK O PHE A 140 MG MG A 800 1555 1555 2.36 LINK MG MG A 800 O LEU B 137 1555 1555 2.56 LINK MG MG A 800 O ALA B 138 1555 1555 2.55 LINK MG MG A 800 O PHE B 140 1555 1555 2.37 LINK OD2 ASP B 41 MG MG B 801 1555 1555 2.36 LINK OG SER B 69 MG MG B 801 1555 1555 2.14 LINK OD1 ASP B 71 MG MG B 801 1555 1555 2.15 LINK O HOH B 355 MG MG B 801 1555 1555 2.02 LINK O HOH B 484 MG MG B 801 1555 1555 2.36 LINK MG MG B 801 O2 PO4 B 802 1555 1555 2.67 LINK MG MG B 801 O3 PO4 B 802 1555 1555 2.82 CISPEP 1 PHE A 140 PRO A 141 0 0.38 CISPEP 2 PHE B 140 PRO B 141 0 0.46 SITE 1 AC1 6 LEU A 137 ALA A 138 PHE A 140 LEU B 137 SITE 2 AC1 6 ALA B 138 PHE B 140 SITE 1 AC2 18 ILE A 39 SER A 69 HIS A 97 TYR A 199 SITE 2 AC2 18 TYR A 201 SER A 228 GLY A 229 ASN A 230 SITE 3 AC2 18 PHE A 250 ALA A 251 GLY A 252 HOH A 298 SITE 4 AC2 18 HOH A 308 HOH A 310 HOH A 312 HOH A 333 SITE 5 AC2 18 HOH A 334 HOH A 381 SITE 1 AC3 6 ASP B 41 SER B 69 ASP B 71 HOH B 355 SITE 2 AC3 6 HOH B 484 PO4 B 802 SITE 1 AC4 10 ASP B 41 SER B 69 THR B 70 ASP B 71 SITE 2 AC4 10 ARG B 203 HOH B 381 HOH B 484 HOH B 485 SITE 3 AC4 10 MG B 801 FPQ B 900 SITE 1 AC5 22 ILE B 39 SER B 69 THR B 70 HIS B 97 SITE 2 AC5 22 LEU B 120 THR B 159 TYR B 199 TYR B 201 SITE 3 AC5 22 SER B 228 GLY B 229 ASN B 230 PHE B 250 SITE 4 AC5 22 ALA B 251 GLY B 252 HOH B 381 HOH B 384 SITE 5 AC5 22 HOH B 387 HOH B 393 HOH B 394 HOH B 395 SITE 6 AC5 22 HOH B 483 PO4 B 802 CRYST1 46.778 58.729 59.242 97.83 112.62 108.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021378 0.007012 0.011454 0.00000 SCALE2 0.000000 0.017920 0.005471 0.00000 SCALE3 0.000000 0.000000 0.019120 0.00000