HEADER TRANSFERASE 12-NOV-11 3VKD
TITLE CRYSTAL STRUCTURE OF MOEO5 SOAKED WITH 3-PHOSPHOGLYCERATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MOEO5;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: 2-CIS,TRANS-FARNESYL-3-PHOSPHOGLYCERATE SYNTHASE;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GHANAENSIS;
SOURCE 3 ORGANISM_TAXID: 566461;
SOURCE 4 STRAIN: ATCC 14672;
SOURCE 5 GENE: MOEO5;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC
KEYWDS TIM BARREL, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.REN,T.-P.KO,C.-H.HUANG,R.-T.GUO
REVDAT 4 08-NOV-23 3VKD 1 REMARK SEQADV LINK
REVDAT 3 22-NOV-17 3VKD 1 REMARK
REVDAT 2 29-APR-15 3VKD 1 JRNL
REVDAT 1 09-MAY-12 3VKD 0
JRNL AUTH F.REN,T.-P.KO,X.FENG,C.-H.HUANG,H.-C.CHAN,Y.HU,K.WANG,Y.MA,
JRNL AUTH 2 P.-H.LIANG,A.H.-J.WANG,E.OLDFIELD,R.-T.GUO
JRNL TITL INSIGHTS INTO THE MECHANISM OF THE ANTIBIOTIC-SYNTHESIZING
JRNL TITL 2 ENZYME MOEO5 FROM CRYSTAL STRUCTURES OF DIFFERENT COMPLEXES
JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 4157 2012
JRNL REFN ISSN 1433-7851
JRNL PMID 22431288
JRNL DOI 10.1002/ANIE.201108002
REMARK 2
REMARK 2 RESOLUTION. 1.66 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4
REMARK 3 NUMBER OF REFLECTIONS : 59609
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.158
REMARK 3 FREE R VALUE : 0.187
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 3013
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.50
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.1789
REMARK 3 BIN FREE R VALUE : 0.2202
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3927
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 59
REMARK 3 SOLVENT ATOMS : 470
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.44
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.90400
REMARK 3 B22 (A**2) : -1.54200
REMARK 3 B33 (A**2) : 0.63700
REMARK 3 B12 (A**2) : -1.39100
REMARK 3 B13 (A**2) : 1.23800
REMARK 3 B23 (A**2) : 0.15700
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.020
REMARK 3 BOND ANGLES (DEGREES) : 2.000
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 1.255 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.862 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 2.040 ; 2.000
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.016 ; 2.500
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : 45.24
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM
REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM
REMARK 3 PARAMETER FILE 3 : LIGAND.PARAM
REMARK 3 PARAMETER FILE 4 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 2 : NULL
REMARK 3 TOPOLOGY FILE 3 : NULL
REMARK 3 TOPOLOGY FILE 4 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3VKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-11.
REMARK 100 THE DEPOSITION ID IS D_1000095153.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-AUG-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSRRC
REMARK 200 BEAMLINE : BL13B1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59984
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660
REMARK 200 RESOLUTION RANGE LOW (A) : 25.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : 0.03500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0
REMARK 200 DATA REDUNDANCY IN SHELL : 4.00
REMARK 200 R MERGE FOR SHELL (I) : 0.08600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.40
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: PDB 3VK5
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.97
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M NA-MALONATE, 10MM
REMARK 280 MGCL2, 20MM 3-PHOSPHOGLYCERATE, PH 6.0, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A -4
REMARK 465 GLY A -3
REMARK 465 ALA A -2
REMARK 465 GLY A -1
REMARK 465 ALA A 0
REMARK 465 MET A 1
REMARK 465 ASN A 2
REMARK 465 ALA A 3
REMARK 465 SER A 4
REMARK 465 PRO A 5
REMARK 465 GLN A 6
REMARK 465 LEU A 7
REMARK 465 ASP A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 THR A 11
REMARK 465 GLU A 12
REMARK 465 LEU A 13
REMARK 465 HIS A 14
REMARK 465 ALA A 15
REMARK 465 ARG A 269
REMARK 465 ARG A 270
REMARK 465 PRO A 271
REMARK 465 ALA A 272
REMARK 465 ALA A 273
REMARK 465 PRO A 274
REMARK 465 ALA A 275
REMARK 465 ARG A 276
REMARK 465 PRO A 277
REMARK 465 GLY A 278
REMARK 465 SER A 279
REMARK 465 GLY A 280
REMARK 465 ARG A 281
REMARK 465 ALA B -4
REMARK 465 GLY B -3
REMARK 465 ALA B -2
REMARK 465 GLY B -1
REMARK 465 ALA B 0
REMARK 465 MET B 1
REMARK 465 ASN B 2
REMARK 465 ALA B 3
REMARK 465 SER B 4
REMARK 465 PRO B 5
REMARK 465 GLN B 6
REMARK 465 LEU B 7
REMARK 465 ASP B 8
REMARK 465 HIS B 9
REMARK 465 HIS B 10
REMARK 465 THR B 11
REMARK 465 GLU B 12
REMARK 465 LEU B 13
REMARK 465 HIS B 14
REMARK 465 ALA B 15
REMARK 465 ALA B 16
REMARK 465 ARG B 269
REMARK 465 ARG B 270
REMARK 465 PRO B 271
REMARK 465 ALA B 272
REMARK 465 ALA B 273
REMARK 465 PRO B 274
REMARK 465 ALA B 275
REMARK 465 ARG B 276
REMARK 465 PRO B 277
REMARK 465 GLY B 278
REMARK 465 SER B 279
REMARK 465 GLY B 280
REMARK 465 ARG B 281
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH1 ARG A 21 O HOH A 295 1.76
REMARK 500 O PRO A 18 O HOH A 295 1.87
REMARK 500 NH1 ARG B 21 O HOH B 409 1.96
REMARK 500 O PRO B 18 O HOH B 417 2.00
REMARK 500 O HOH A 344 O HOH A 526 2.02
REMARK 500 NE ARG B 21 O HOH B 417 2.12
REMARK 500 O HOH B 388 O HOH B 489 2.13
REMARK 500 OD1 ASP A 258 O HOH A 291 2.16
REMARK 500 O HOH A 370 O HOH A 371 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 19 -107.27 51.09
REMARK 500 ALA A 104 -33.92 -132.27
REMARK 500 TRP A 130 -16.45 -165.95
REMARK 500 ASP A 163 78.40 -161.27
REMARK 500 GLU A 205 -152.98 -130.82
REMARK 500 GLU A 255 57.11 -92.99
REMARK 500 ASP A 258 35.96 -89.84
REMARK 500 LEU B 19 -109.28 54.79
REMARK 500 TRP B 130 -16.08 -166.20
REMARK 500 ASP B 163 77.78 -160.98
REMARK 500 GLU B 205 -150.76 -135.75
REMARK 500 ASP B 258 36.47 -90.87
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 800 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 LEU A 137 O
REMARK 620 2 ALA A 138 O 78.6
REMARK 620 3 PHE A 140 O 94.7 87.8
REMARK 620 4 LEU B 137 O 71.2 104.0 159.0
REMARK 620 5 ALA B 138 O 102.7 178.1 90.6 77.9
REMARK 620 6 PHE B 140 O 157.2 90.6 105.0 92.4 88.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 801 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 41 OD2
REMARK 620 2 SER B 69 OG 96.5
REMARK 620 3 ASP B 71 OD1 176.7 84.3
REMARK 620 4 HOH B 355 O 86.8 91.2 90.1
REMARK 620 5 HOH B 484 O 77.3 167.6 102.4 99.1
REMARK 620 6 PO4 B 802 O2 80.8 80.8 102.4 164.3 87.6
REMARK 620 7 PO4 B 802 O3 113.0 116.7 69.2 142.1 57.8 53.0
REMARK 620 N 1 2 3 4 5 6
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 800
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPQ A 900
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 802
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPQ B 900
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3VK5 RELATED DB: PDB
REMARK 900 NATIVE PROTEIN
REMARK 900 RELATED ID: 3VKA RELATED DB: PDB
REMARK 900 SOAKED WITH FSPP FOR 3 HOURS
REMARK 900 RELATED ID: 3VKB RELATED DB: PDB
REMARK 900 SOAKED WITH FSPP OVERNIGHT
REMARK 900 RELATED ID: 3VKC RELATED DB: PDB
REMARK 900 SOAKED WITH PYROPHOSPHATE
DBREF 3VKD A 1 281 UNP A0A011 A0A011_9ACTO 1 281
DBREF 3VKD B 1 281 UNP A0A011 A0A011_9ACTO 1 281
SEQADV 3VKD ALA A -4 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD GLY A -3 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD ALA A -2 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD GLY A -1 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD ALA A 0 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD ALA B -4 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD GLY B -3 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD ALA B -2 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD GLY B -1 UNP A0A011 EXPRESSION TAG
SEQADV 3VKD ALA B 0 UNP A0A011 EXPRESSION TAG
SEQRES 1 A 286 ALA GLY ALA GLY ALA MET ASN ALA SER PRO GLN LEU ASP
SEQRES 2 A 286 HIS HIS THR GLU LEU HIS ALA ALA PRO PRO LEU TRP ARG
SEQRES 3 A 286 PRO GLY ARG VAL LEU ALA ARG LEU ARG GLU HIS GLN PRO
SEQRES 4 A 286 GLY PRO VAL HIS ILE ILE ASP PRO PHE LYS VAL PRO VAL
SEQRES 5 A 286 THR GLU ALA VAL GLU LYS ALA ALA GLU LEU THR ARG LEU
SEQRES 6 A 286 GLY PHE ALA ALA VAL LEU LEU ALA SER THR ASP TYR GLU
SEQRES 7 A 286 SER PHE GLU SER HIS MET GLU PRO TYR VAL ALA ALA VAL
SEQRES 8 A 286 LYS ALA ALA THR PRO LEU PRO VAL VAL LEU HIS PHE PRO
SEQRES 9 A 286 PRO ARG PRO GLY ALA GLY PHE PRO VAL VAL ARG GLY ALA
SEQRES 10 A 286 ASP ALA LEU LEU LEU PRO ALA LEU LEU GLY SER GLY ASP
SEQRES 11 A 286 ASP TYR PHE VAL TRP LYS SER PHE LEU GLU THR LEU ALA
SEQRES 12 A 286 ALA PHE PRO GLY ARG ILE PRO ARG GLU GLU TRP PRO GLU
SEQRES 13 A 286 LEU LEU LEU THR VAL ALA LEU THR PHE GLY GLU ASP PRO
SEQRES 14 A 286 ARG THR GLY ASP LEU LEU GLY THR VAL PRO VAL SER THR
SEQRES 15 A 286 ALA SER THR GLU GLU ILE ASP ARG TYR LEU HIS VAL ALA
SEQRES 16 A 286 ARG ALA PHE GLY PHE HIS MET VAL TYR LEU TYR SER ARG
SEQRES 17 A 286 ASN GLU HIS VAL PRO PRO GLU VAL VAL ARG HIS PHE ARG
SEQRES 18 A 286 LYS GLY LEU GLY PRO ASP GLN VAL LEU PHE VAL SER GLY
SEQRES 19 A 286 ASN VAL ARG SER GLY ARG GLN VAL THR GLU TYR LEU ASP
SEQRES 20 A 286 SER GLY ALA ASP TYR VAL GLY PHE ALA GLY ALA LEU GLU
SEQRES 21 A 286 GLN PRO ASP TRP ARG SER ALA LEU ALA GLU ILE ALA GLY
SEQRES 22 A 286 ARG ARG PRO ALA ALA PRO ALA ARG PRO GLY SER GLY ARG
SEQRES 1 B 286 ALA GLY ALA GLY ALA MET ASN ALA SER PRO GLN LEU ASP
SEQRES 2 B 286 HIS HIS THR GLU LEU HIS ALA ALA PRO PRO LEU TRP ARG
SEQRES 3 B 286 PRO GLY ARG VAL LEU ALA ARG LEU ARG GLU HIS GLN PRO
SEQRES 4 B 286 GLY PRO VAL HIS ILE ILE ASP PRO PHE LYS VAL PRO VAL
SEQRES 5 B 286 THR GLU ALA VAL GLU LYS ALA ALA GLU LEU THR ARG LEU
SEQRES 6 B 286 GLY PHE ALA ALA VAL LEU LEU ALA SER THR ASP TYR GLU
SEQRES 7 B 286 SER PHE GLU SER HIS MET GLU PRO TYR VAL ALA ALA VAL
SEQRES 8 B 286 LYS ALA ALA THR PRO LEU PRO VAL VAL LEU HIS PHE PRO
SEQRES 9 B 286 PRO ARG PRO GLY ALA GLY PHE PRO VAL VAL ARG GLY ALA
SEQRES 10 B 286 ASP ALA LEU LEU LEU PRO ALA LEU LEU GLY SER GLY ASP
SEQRES 11 B 286 ASP TYR PHE VAL TRP LYS SER PHE LEU GLU THR LEU ALA
SEQRES 12 B 286 ALA PHE PRO GLY ARG ILE PRO ARG GLU GLU TRP PRO GLU
SEQRES 13 B 286 LEU LEU LEU THR VAL ALA LEU THR PHE GLY GLU ASP PRO
SEQRES 14 B 286 ARG THR GLY ASP LEU LEU GLY THR VAL PRO VAL SER THR
SEQRES 15 B 286 ALA SER THR GLU GLU ILE ASP ARG TYR LEU HIS VAL ALA
SEQRES 16 B 286 ARG ALA PHE GLY PHE HIS MET VAL TYR LEU TYR SER ARG
SEQRES 17 B 286 ASN GLU HIS VAL PRO PRO GLU VAL VAL ARG HIS PHE ARG
SEQRES 18 B 286 LYS GLY LEU GLY PRO ASP GLN VAL LEU PHE VAL SER GLY
SEQRES 19 B 286 ASN VAL ARG SER GLY ARG GLN VAL THR GLU TYR LEU ASP
SEQRES 20 B 286 SER GLY ALA ASP TYR VAL GLY PHE ALA GLY ALA LEU GLU
SEQRES 21 B 286 GLN PRO ASP TRP ARG SER ALA LEU ALA GLU ILE ALA GLY
SEQRES 22 B 286 ARG ARG PRO ALA ALA PRO ALA ARG PRO GLY SER GLY ARG
HET MG A 800 1
HET FPQ A 900 26
HET MG B 801 1
HET PO4 B 802 5
HET FPQ B 900 26
HETNAM MG MAGNESIUM ION
HETNAM FPQ (2R)-3-(PHOSPHONOOXY)-2-{[(2Z,6E)-3,7,11-
HETNAM 2 FPQ TRIMETHYLDODECA-2,6,10-TRIEN-1-YL]OXY}PROPANOIC ACID
HETNAM PO4 PHOSPHATE ION
FORMUL 3 MG 2(MG 2+)
FORMUL 4 FPQ 2(C18 H31 O7 P)
FORMUL 6 PO4 O4 P 3-
FORMUL 8 HOH *470(H2 O)
HELIX 1 1 GLY A 23 HIS A 32 1 10
HELIX 2 2 PRO A 46 LEU A 60 1 15
HELIX 3 3 SER A 74 THR A 90 1 17
HELIX 4 4 ASP A 125 TRP A 130 1 6
HELIX 5 5 TRP A 130 PHE A 140 1 11
HELIX 6 6 PRO A 145 TRP A 149 5 5
HELIX 7 7 ASP A 163 GLY A 171 1 9
HELIX 8 8 THR A 180 PHE A 193 1 14
HELIX 9 9 PRO A 208 LEU A 219 1 12
HELIX 10 10 SER A 233 SER A 243 1 11
HELIX 11 11 ALA A 251 GLU A 255 5 5
HELIX 12 12 ASP A 258 GLY A 268 1 11
HELIX 13 13 GLY B 23 HIS B 32 1 10
HELIX 14 14 PRO B 46 GLY B 61 1 16
HELIX 15 15 SER B 74 THR B 90 1 17
HELIX 16 16 ASP B 125 TRP B 130 1 6
HELIX 17 17 TRP B 130 PHE B 140 1 11
HELIX 18 18 PRO B 145 TRP B 149 5 5
HELIX 19 19 ASP B 163 GLY B 171 1 9
HELIX 20 20 THR B 180 PHE B 193 1 14
HELIX 21 21 PRO B 208 LEU B 219 1 12
HELIX 22 22 SER B 233 SER B 243 1 11
HELIX 23 23 ALA B 251 GLU B 255 5 5
HELIX 24 24 ASP B 258 ALA B 267 1 10
SHEET 1 A 9 GLY A 35 ILE A 40 0
SHEET 2 A 9 VAL A 65 ALA A 68 1 O LEU A 66 N ILE A 40
SHEET 3 A 9 VAL A 94 HIS A 97 1 O VAL A 95 N VAL A 65
SHEET 4 A 9 ALA A 114 ALA A 119 1 O LEU A 116 N LEU A 96
SHEET 5 A 9 GLU A 151 THR A 159 1 O THR A 155 N ALA A 119
SHEET 6 A 9 MET A 197 TYR A 201 1 O TYR A 199 N VAL A 156
SHEET 7 A 9 VAL A 224 SER A 228 1 O PHE A 226 N VAL A 198
SHEET 8 A 9 TYR A 247 PHE A 250 1 O GLY A 249 N VAL A 227
SHEET 9 A 9 GLY A 35 ILE A 40 1 N ILE A 39 O PHE A 250
SHEET 1 B 9 GLY B 35 ILE B 40 0
SHEET 2 B 9 VAL B 65 ALA B 68 1 O LEU B 66 N ILE B 40
SHEET 3 B 9 VAL B 94 HIS B 97 1 O VAL B 95 N VAL B 65
SHEET 4 B 9 ALA B 114 ALA B 119 1 O LEU B 116 N LEU B 96
SHEET 5 B 9 GLU B 151 THR B 159 1 O THR B 155 N ALA B 119
SHEET 6 B 9 MET B 197 TYR B 201 1 O TYR B 199 N VAL B 156
SHEET 7 B 9 VAL B 224 SER B 228 1 O PHE B 226 N VAL B 198
SHEET 8 B 9 TYR B 247 PHE B 250 1 O GLY B 249 N VAL B 227
SHEET 9 B 9 GLY B 35 ILE B 40 1 N ILE B 39 O PHE B 250
LINK O LEU A 137 MG MG A 800 1555 1555 2.56
LINK O ALA A 138 MG MG A 800 1555 1555 2.53
LINK O PHE A 140 MG MG A 800 1555 1555 2.36
LINK MG MG A 800 O LEU B 137 1555 1555 2.56
LINK MG MG A 800 O ALA B 138 1555 1555 2.55
LINK MG MG A 800 O PHE B 140 1555 1555 2.37
LINK OD2 ASP B 41 MG MG B 801 1555 1555 2.36
LINK OG SER B 69 MG MG B 801 1555 1555 2.14
LINK OD1 ASP B 71 MG MG B 801 1555 1555 2.15
LINK O HOH B 355 MG MG B 801 1555 1555 2.02
LINK O HOH B 484 MG MG B 801 1555 1555 2.36
LINK MG MG B 801 O2 PO4 B 802 1555 1555 2.67
LINK MG MG B 801 O3 PO4 B 802 1555 1555 2.82
CISPEP 1 PHE A 140 PRO A 141 0 0.38
CISPEP 2 PHE B 140 PRO B 141 0 0.46
SITE 1 AC1 6 LEU A 137 ALA A 138 PHE A 140 LEU B 137
SITE 2 AC1 6 ALA B 138 PHE B 140
SITE 1 AC2 18 ILE A 39 SER A 69 HIS A 97 TYR A 199
SITE 2 AC2 18 TYR A 201 SER A 228 GLY A 229 ASN A 230
SITE 3 AC2 18 PHE A 250 ALA A 251 GLY A 252 HOH A 298
SITE 4 AC2 18 HOH A 308 HOH A 310 HOH A 312 HOH A 333
SITE 5 AC2 18 HOH A 334 HOH A 381
SITE 1 AC3 6 ASP B 41 SER B 69 ASP B 71 HOH B 355
SITE 2 AC3 6 HOH B 484 PO4 B 802
SITE 1 AC4 10 ASP B 41 SER B 69 THR B 70 ASP B 71
SITE 2 AC4 10 ARG B 203 HOH B 381 HOH B 484 HOH B 485
SITE 3 AC4 10 MG B 801 FPQ B 900
SITE 1 AC5 22 ILE B 39 SER B 69 THR B 70 HIS B 97
SITE 2 AC5 22 LEU B 120 THR B 159 TYR B 199 TYR B 201
SITE 3 AC5 22 SER B 228 GLY B 229 ASN B 230 PHE B 250
SITE 4 AC5 22 ALA B 251 GLY B 252 HOH B 381 HOH B 384
SITE 5 AC5 22 HOH B 387 HOH B 393 HOH B 394 HOH B 395
SITE 6 AC5 22 HOH B 483 PO4 B 802
CRYST1 46.778 58.729 59.242 97.83 112.62 108.16 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021378 0.007012 0.011454 0.00000
SCALE2 0.000000 0.017920 0.005471 0.00000
SCALE3 0.000000 0.000000 0.019120 0.00000