data_3VKO # _entry.id 3VKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VKO pdb_00003vko 10.2210/pdb3vko/pdb RCSB RCSB095164 ? ? WWPDB D_1000095164 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3VKL . unspecified PDB 3VKM . unspecified PDB 3VKN . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VKO _pdbx_database_status.recvd_initial_deposition_date 2011-11-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kamitori, S.' 1 'Yoshida, H.' 2 # _citation.id primary _citation.title 'X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 279 _citation.page_first 3937 _citation.page_last 3951 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22913484 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2012.08753.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoshida, H.' 1 ? primary 'Yamashita, S.' 2 ? primary 'Teraoka, M.' 3 ? primary 'Itoh, A.' 4 ? primary 'Nakakita, S.' 5 ? primary 'Nishi, N.' 6 ? primary 'Kamitori, S.' 7 ? # _cell.entry_id 3VKO _cell.length_a 54.710 _cell.length_b 61.500 _cell.length_c 84.070 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VKO _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-8 17368.109 2 ? ? 'N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN' ? 2 branched man 'N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 674.604 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 247 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Gal-8, Po66 carbohydrate-binding protein, Po66-CBP, Prostate carcinoma tumor antigen 1, PCTA-1' 2 "3'-sialyl-N-acetyllactosamine" # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSF ; _entity_poly.pdbx_seq_one_letter_code_can ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 LEU n 1 4 SER n 1 5 LEU n 1 6 ASN n 1 7 ASN n 1 8 LEU n 1 9 GLN n 1 10 ASN n 1 11 ILE n 1 12 ILE n 1 13 TYR n 1 14 ASN n 1 15 PRO n 1 16 VAL n 1 17 ILE n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ILE n 1 24 PRO n 1 25 ASP n 1 26 GLN n 1 27 LEU n 1 28 ASP n 1 29 PRO n 1 30 GLY n 1 31 THR n 1 32 LEU n 1 33 ILE n 1 34 VAL n 1 35 ILE n 1 36 ARG n 1 37 GLY n 1 38 HIS n 1 39 VAL n 1 40 PRO n 1 41 SER n 1 42 ASP n 1 43 ALA n 1 44 ASP n 1 45 ARG n 1 46 PHE n 1 47 GLN n 1 48 VAL n 1 49 ASP n 1 50 LEU n 1 51 GLN n 1 52 ASN n 1 53 GLY n 1 54 SER n 1 55 SER n 1 56 MET n 1 57 LYS n 1 58 PRO n 1 59 ARG n 1 60 ALA n 1 61 ASP n 1 62 VAL n 1 63 ALA n 1 64 PHE n 1 65 HIS n 1 66 PHE n 1 67 ASN n 1 68 PRO n 1 69 ARG n 1 70 PHE n 1 71 LYS n 1 72 ARG n 1 73 ALA n 1 74 GLY n 1 75 CYS n 1 76 ILE n 1 77 VAL n 1 78 CYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 ILE n 1 83 ASN n 1 84 GLU n 1 85 LYS n 1 86 TRP n 1 87 GLY n 1 88 ARG n 1 89 GLU n 1 90 GLU n 1 91 ILE n 1 92 THR n 1 93 TYR n 1 94 ASP n 1 95 THR n 1 96 PRO n 1 97 PHE n 1 98 LYS n 1 99 ARG n 1 100 GLU n 1 101 LYS n 1 102 SER n 1 103 PHE n 1 104 GLU n 1 105 ILE n 1 106 VAL n 1 107 ILE n 1 108 MET n 1 109 VAL n 1 110 LEU n 1 111 LYS n 1 112 ASP n 1 113 LYS n 1 114 PHE n 1 115 GLN n 1 116 VAL n 1 117 ALA n 1 118 VAL n 1 119 ASN n 1 120 GLY n 1 121 LYS n 1 122 HIS n 1 123 THR n 1 124 LEU n 1 125 LEU n 1 126 TYR n 1 127 GLY n 1 128 HIS n 1 129 ARG n 1 130 ILE n 1 131 GLY n 1 132 PRO n 1 133 GLU n 1 134 LYS n 1 135 ILE n 1 136 ASP n 1 137 THR n 1 138 LEU n 1 139 GLY n 1 140 ILE n 1 141 TYR n 1 142 GLY n 1 143 LYS n 1 144 VAL n 1 145 ASN n 1 146 ILE n 1 147 HIS n 1 148 SER n 1 149 ILE n 1 150 GLY n 1 151 PHE n 1 152 SER n 1 153 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEG8_HUMAN _struct_ref.pdbx_db_accession O00214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VKO A 1 ? 153 ? O00214 1 ? 153 ? 1 153 2 1 3VKO B 1 ? 153 ? O00214 1 ? 153 ? 1 153 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pdbx_details '30%(v/v) PEG400, 0.1M CHES, pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS VII' _diffrn_detector.pdbx_collection_date 2011-07-22 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'confocal mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3VKO _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.08 _reflns.number_obs 17578 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.8 _reflns.B_iso_Wilson_estimate 18.500 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.327 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VKO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.0800 _refine.ls_d_res_low 22.6000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 1416924.0000 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.ls_percent_reflns_obs 99.6000 _refine.ls_number_reflns_obs 17576 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2120 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2490 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9000 _refine.ls_number_reflns_R_free 1743 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error 0.0060 _refine.B_iso_mean 44.1042 _refine.solvent_model_param_bsol 58.0525 _refine.solvent_model_param_ksol 0.3264 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -10.5700 _refine.aniso_B[2][2] -1.4000 _refine.aniso_B[3][3] 11.9600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2YV8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 98.190 _refine.B_iso_min 26.460 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.860 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 3VKO _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.270 _refine_analyze.Luzzati_sigma_a_obs 0.330 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.320 _refine_analyze.Luzzati_sigma_a_free 0.340 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2354 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 2694 _refine_hist.d_res_high 2.0800 _refine_hist.d_res_low 22.6000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_bond_d ? 0.006 ? ? ? 'X-RAY DIFFRACTION' c_angle_deg ? 1.300 ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d ? 26.200 ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d ? 0.860 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 1.450 1.500 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 2.330 2.000 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.070 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.920 2.500 ? ? # _refine_ls_shell.d_res_high 2.0800 _refine_ls_shell.d_res_low 2.2100 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 99.9000 _refine_ls_shell.number_reflns_R_work 2604 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3260 _refine_ls_shell.R_factor_R_free 0.3340 _refine_ls_shell.percent_reflns_R_free 10.2000 _refine_ls_shell.number_reflns_R_free 297 _refine_ls_shell.R_factor_R_free_error 0.0190 _refine_ls_shell.number_reflns_all 2901 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' 4 water_rep.param ? # _struct.entry_id 3VKO _struct.title 'Galectin-8 N-terminal domain in complex with sialyllactosamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VKO _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'beta-sandwich, carbohydrate binding, oligosaccharide, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS MONOMER OR PSEUDO-DIMER OR UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 132 ? ILE A 135 ? PRO A 132 ILE A 135 1 ? 4 HELX_P HELX_P2 2 PRO B 132 ? ILE B 135 ? PRO B 132 ILE B 135 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C NAG . O4 ? ? ? 1_555 C GAL . C1 ? ? C NAG 1 C GAL 2 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale2 covale both ? C GAL . O3 ? ? ? 1_555 C SIA . C2 ? ? C GAL 2 C SIA 3 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale3 covale both ? D NAG . O4 ? ? ? 1_555 D GAL . C1 ? ? D NAG 1 D GAL 2 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale4 covale both ? D GAL . O3 ? ? ? 1_555 D SIA . C2 ? ? D GAL 2 D SIA 3 1_555 ? ? ? ? ? ? ? 1.386 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 17 A . ? ILE 17 A PRO 18 A ? PRO 18 A 1 -0.50 2 LYS 57 A . ? LYS 57 A PRO 58 A ? PRO 58 A 1 0.05 3 ILE 17 B . ? ILE 17 B PRO 18 B ? PRO 18 B 1 1.04 4 LYS 57 B . ? LYS 57 B PRO 58 B ? PRO 58 B 1 -0.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 6 ? D ? 6 ? E ? 6 ? F ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? ASN A 14 ? ILE A 11 ASN A 14 A 2 ASN A 145 ? SER A 152 ? ASN A 145 SER A 152 A 3 GLY A 30 ? VAL A 39 ? GLY A 30 VAL A 39 A 4 LYS A 101 ? LEU A 110 ? LYS A 101 LEU A 110 A 5 LYS A 113 ? VAL A 118 ? LYS A 113 VAL A 118 A 6 LYS A 121 ? GLY A 127 ? LYS A 121 GLY A 127 B 1 PHE A 19 ? ILE A 23 ? PHE A 19 ILE A 23 B 2 ASP A 136 ? GLY A 142 ? ASP A 136 GLY A 142 B 3 ASP A 44 ? GLN A 51 ? ASP A 44 GLN A 51 B 4 ASP A 61 ? PHE A 70 ? ASP A 61 PHE A 70 B 5 CYS A 75 ? ILE A 82 ? CYS A 75 ILE A 82 B 6 LYS A 85 ? GLY A 87 ? LYS A 85 GLY A 87 C 1 PHE A 19 ? ILE A 23 ? PHE A 19 ILE A 23 C 2 ASP A 136 ? GLY A 142 ? ASP A 136 GLY A 142 C 3 ASP A 44 ? GLN A 51 ? ASP A 44 GLN A 51 C 4 ASP A 61 ? PHE A 70 ? ASP A 61 PHE A 70 C 5 CYS A 75 ? ILE A 82 ? CYS A 75 ILE A 82 C 6 GLU A 90 ? TYR A 93 ? GLU A 90 TYR A 93 D 1 ILE B 11 ? ASN B 14 ? ILE B 11 ASN B 14 D 2 ASN B 145 ? SER B 152 ? ASN B 145 SER B 152 D 3 GLY B 30 ? VAL B 39 ? GLY B 30 VAL B 39 D 4 LYS B 101 ? LEU B 110 ? LYS B 101 LEU B 110 D 5 LYS B 113 ? VAL B 118 ? LYS B 113 VAL B 118 D 6 LYS B 121 ? GLY B 127 ? LYS B 121 GLY B 127 E 1 PHE B 19 ? ILE B 23 ? PHE B 19 ILE B 23 E 2 ASP B 136 ? GLY B 142 ? ASP B 136 GLY B 142 E 3 ASP B 44 ? GLN B 51 ? ASP B 44 GLN B 51 E 4 ASP B 61 ? PHE B 70 ? ASP B 61 PHE B 70 E 5 CYS B 75 ? ILE B 82 ? CYS B 75 ILE B 82 E 6 LYS B 85 ? GLY B 87 ? LYS B 85 GLY B 87 F 1 PHE B 19 ? ILE B 23 ? PHE B 19 ILE B 23 F 2 ASP B 136 ? GLY B 142 ? ASP B 136 GLY B 142 F 3 ASP B 44 ? GLN B 51 ? ASP B 44 GLN B 51 F 4 ASP B 61 ? PHE B 70 ? ASP B 61 PHE B 70 F 5 CYS B 75 ? ILE B 82 ? CYS B 75 ILE B 82 F 6 GLU B 90 ? TYR B 93 ? GLU B 90 TYR B 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 12 ? O ILE A 12 N ILE A 149 ? N ILE A 149 A 2 3 O GLY A 150 ? O GLY A 150 N VAL A 34 ? N VAL A 34 A 3 4 O ILE A 35 ? O ILE A 35 N ILE A 105 ? N ILE A 105 A 4 5 O MET A 108 ? O MET A 108 N GLN A 115 ? N GLN A 115 A 5 6 O PHE A 114 ? O PHE A 114 N TYR A 126 ? N TYR A 126 B 1 2 O GLY A 21 ? O GLY A 21 N LEU A 138 ? N LEU A 138 B 2 3 O TYR A 141 ? O TYR A 141 N GLN A 47 ? N GLN A 47 B 3 4 O LEU A 50 ? O LEU A 50 N VAL A 62 ? N VAL A 62 B 4 5 O VAL A 62 ? O VAL A 62 N LEU A 81 ? N LEU A 81 B 5 6 N ILE A 82 ? N ILE A 82 O LYS A 85 ? O LYS A 85 C 1 2 O GLY A 21 ? O GLY A 21 N LEU A 138 ? N LEU A 138 C 2 3 O TYR A 141 ? O TYR A 141 N GLN A 47 ? N GLN A 47 C 3 4 O LEU A 50 ? O LEU A 50 N VAL A 62 ? N VAL A 62 C 4 5 O VAL A 62 ? O VAL A 62 N LEU A 81 ? N LEU A 81 C 5 6 O ILE A 76 ? O ILE A 76 N THR A 92 ? N THR A 92 D 1 2 O ILE B 12 ? O ILE B 12 N ILE B 149 ? N ILE B 149 D 2 3 O GLY B 150 ? O GLY B 150 N VAL B 34 ? N VAL B 34 D 3 4 O ILE B 35 ? O ILE B 35 N ILE B 105 ? N ILE B 105 D 4 5 O MET B 108 ? O MET B 108 N GLN B 115 ? N GLN B 115 D 5 6 O PHE B 114 ? O PHE B 114 N TYR B 126 ? N TYR B 126 E 1 2 O GLY B 21 ? O GLY B 21 N LEU B 138 ? N LEU B 138 E 2 3 O TYR B 141 ? O TYR B 141 N GLN B 47 ? N GLN B 47 E 3 4 O LEU B 50 ? O LEU B 50 N VAL B 62 ? N VAL B 62 E 4 5 O VAL B 62 ? O VAL B 62 N LEU B 81 ? N LEU B 81 E 5 6 N ILE B 82 ? N ILE B 82 O LYS B 85 ? O LYS B 85 F 1 2 O GLY B 21 ? O GLY B 21 N LEU B 138 ? N LEU B 138 F 2 3 O TYR B 141 ? O TYR B 141 N GLN B 47 ? N GLN B 47 F 3 4 O LEU B 50 ? O LEU B 50 N VAL B 62 ? N VAL B 62 F 4 5 O VAL B 62 ? O VAL B 62 N LEU B 81 ? N LEU B 81 F 5 6 O ILE B 76 ? O ILE B 76 N THR B 92 ? N THR B 92 # _database_PDB_matrix.entry_id 3VKO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VKO _atom_sites.fract_transf_matrix[1][1] 0.018278 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016260 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011895 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 ASN 6 6 ? ? ? A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 PHE 153 153 153 PHE PHE A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 MET 2 2 ? ? ? B . n B 1 3 LEU 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 ASN 6 6 ? ? ? B . n B 1 7 ASN 7 7 7 ASN ASN B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 GLN 9 9 9 GLN GLN B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 TYR 13 13 13 TYR TYR B . n B 1 14 ASN 14 14 14 ASN ASN B . n B 1 15 PRO 15 15 15 PRO PRO B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 ILE 17 17 17 ILE ILE B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 PHE 19 19 19 PHE PHE B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 THR 22 22 22 THR THR B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 GLN 26 26 26 GLN GLN B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 ILE 35 35 35 ILE ILE B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 HIS 38 38 38 HIS HIS B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 ASP 42 42 42 ASP ASP B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 PHE 46 46 46 PHE PHE B . n B 1 47 GLN 47 47 47 GLN GLN B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 GLN 51 51 51 GLN GLN B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 MET 56 56 56 MET MET B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 PRO 58 58 58 PRO PRO B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 HIS 65 65 65 HIS HIS B . n B 1 66 PHE 66 66 66 PHE PHE B . n B 1 67 ASN 67 67 67 ASN ASN B . n B 1 68 PRO 68 68 68 PRO PRO B . n B 1 69 ARG 69 69 69 ARG ARG B . n B 1 70 PHE 70 70 70 PHE PHE B . n B 1 71 LYS 71 71 71 LYS LYS B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 CYS 75 75 75 CYS CYS B . n B 1 76 ILE 76 76 76 ILE ILE B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 CYS 78 78 78 CYS CYS B . n B 1 79 ASN 79 79 79 ASN ASN B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 ILE 82 82 82 ILE ILE B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 TRP 86 86 86 TRP TRP B . n B 1 87 GLY 87 87 87 GLY GLY B . n B 1 88 ARG 88 88 88 ARG ARG B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 THR 92 92 92 THR THR B . n B 1 93 TYR 93 93 93 TYR TYR B . n B 1 94 ASP 94 94 94 ASP ASP B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 PHE 97 97 97 PHE PHE B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 ARG 99 99 99 ARG ARG B . n B 1 100 GLU 100 100 100 GLU GLU B . n B 1 101 LYS 101 101 101 LYS LYS B . n B 1 102 SER 102 102 102 SER SER B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ILE 105 105 105 ILE ILE B . n B 1 106 VAL 106 106 106 VAL VAL B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 MET 108 108 108 MET MET B . n B 1 109 VAL 109 109 109 VAL VAL B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 ASP 112 112 112 ASP ASP B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 PHE 114 114 114 PHE PHE B . n B 1 115 GLN 115 115 115 GLN GLN B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 ALA 117 117 117 ALA ALA B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 GLY 120 120 120 GLY GLY B . n B 1 121 LYS 121 121 121 LYS LYS B . n B 1 122 HIS 122 122 122 HIS HIS B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 LEU 125 125 125 LEU LEU B . n B 1 126 TYR 126 126 126 TYR TYR B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 HIS 128 128 128 HIS HIS B . n B 1 129 ARG 129 129 129 ARG ARG B . n B 1 130 ILE 130 130 130 ILE ILE B . n B 1 131 GLY 131 131 131 GLY GLY B . n B 1 132 PRO 132 132 132 PRO PRO B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 ASP 136 136 136 ASP ASP B . n B 1 137 THR 137 137 137 THR THR B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 GLY 139 139 139 GLY GLY B . n B 1 140 ILE 140 140 140 ILE ILE B . n B 1 141 TYR 141 141 141 TYR TYR B . n B 1 142 GLY 142 142 142 GLY GLY B . n B 1 143 LYS 143 143 143 LYS LYS B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 ASN 145 145 145 ASN ASN B . n B 1 146 ILE 146 146 146 ILE ILE B . n B 1 147 HIS 147 147 147 HIS HIS B . n B 1 148 SER 148 148 148 SER SER B . n B 1 149 ILE 149 149 149 ILE ILE B . n B 1 150 GLY 150 150 150 GLY GLY B . n B 1 151 PHE 151 151 151 PHE PHE B . n B 1 152 SER 152 152 152 SER SER B . n B 1 153 PHE 153 153 153 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL 1 204 1 CL CL A . F 4 HOH 1 301 2 HOH HOH A . F 4 HOH 2 302 4 HOH HOH A . F 4 HOH 3 303 7 HOH HOH A . F 4 HOH 4 304 8 HOH HOH A . F 4 HOH 5 305 9 HOH HOH A . F 4 HOH 6 306 10 HOH HOH A . F 4 HOH 7 307 11 HOH HOH A . F 4 HOH 8 308 14 HOH HOH A . F 4 HOH 9 309 15 HOH HOH A . F 4 HOH 10 310 16 HOH HOH A . F 4 HOH 11 311 18 HOH HOH A . F 4 HOH 12 312 20 HOH HOH A . F 4 HOH 13 313 21 HOH HOH A . F 4 HOH 14 314 22 HOH HOH A . F 4 HOH 15 315 23 HOH HOH A . F 4 HOH 16 316 27 HOH HOH A . F 4 HOH 17 317 28 HOH HOH A . F 4 HOH 18 318 31 HOH HOH A . F 4 HOH 19 319 34 HOH HOH A . F 4 HOH 20 320 35 HOH HOH A . F 4 HOH 21 321 36 HOH HOH A . F 4 HOH 22 322 37 HOH HOH A . F 4 HOH 23 323 39 HOH HOH A . F 4 HOH 24 324 40 HOH HOH A . F 4 HOH 25 325 45 HOH HOH A . F 4 HOH 26 326 46 HOH HOH A . F 4 HOH 27 327 48 HOH HOH A . F 4 HOH 28 328 50 HOH HOH A . F 4 HOH 29 329 52 HOH HOH A . F 4 HOH 30 330 61 HOH HOH A . F 4 HOH 31 331 62 HOH HOH A . F 4 HOH 32 332 64 HOH HOH A . F 4 HOH 33 333 65 HOH HOH A . F 4 HOH 34 334 67 HOH HOH A . F 4 HOH 35 335 69 HOH HOH A . F 4 HOH 36 336 70 HOH HOH A . F 4 HOH 37 337 72 HOH HOH A . F 4 HOH 38 338 74 HOH HOH A . F 4 HOH 39 339 77 HOH HOH A . F 4 HOH 40 340 79 HOH HOH A . F 4 HOH 41 341 80 HOH HOH A . F 4 HOH 42 342 82 HOH HOH A . F 4 HOH 43 343 84 HOH HOH A . F 4 HOH 44 344 85 HOH HOH A . F 4 HOH 45 345 86 HOH HOH A . F 4 HOH 46 346 87 HOH HOH A . F 4 HOH 47 347 88 HOH HOH A . F 4 HOH 48 348 90 HOH HOH A . F 4 HOH 49 349 91 HOH HOH A . F 4 HOH 50 350 92 HOH HOH A . F 4 HOH 51 351 93 HOH HOH A . F 4 HOH 52 352 95 HOH HOH A . F 4 HOH 53 353 96 HOH HOH A . F 4 HOH 54 354 97 HOH HOH A . F 4 HOH 55 355 100 HOH HOH A . F 4 HOH 56 356 101 HOH HOH A . F 4 HOH 57 357 105 HOH HOH A . F 4 HOH 58 358 106 HOH HOH A . F 4 HOH 59 359 107 HOH HOH A . F 4 HOH 60 360 109 HOH HOH A . F 4 HOH 61 361 111 HOH HOH A . F 4 HOH 62 362 112 HOH HOH A . F 4 HOH 63 363 113 HOH HOH A . F 4 HOH 64 364 114 HOH HOH A . F 4 HOH 65 365 116 HOH HOH A . F 4 HOH 66 366 117 HOH HOH A . F 4 HOH 67 367 118 HOH HOH A . F 4 HOH 68 368 119 HOH HOH A . F 4 HOH 69 369 120 HOH HOH A . F 4 HOH 70 370 124 HOH HOH A . F 4 HOH 71 371 125 HOH HOH A . F 4 HOH 72 372 126 HOH HOH A . F 4 HOH 73 373 131 HOH HOH A . F 4 HOH 74 374 132 HOH HOH A . F 4 HOH 75 375 133 HOH HOH A . F 4 HOH 76 376 134 HOH HOH A . F 4 HOH 77 377 137 HOH HOH A . F 4 HOH 78 378 140 HOH HOH A . F 4 HOH 79 379 142 HOH HOH A . F 4 HOH 80 380 150 HOH HOH A . F 4 HOH 81 381 151 HOH HOH A . F 4 HOH 82 382 152 HOH HOH A . F 4 HOH 83 383 153 HOH HOH A . F 4 HOH 84 384 154 HOH HOH A . F 4 HOH 85 385 156 HOH HOH A . F 4 HOH 86 386 157 HOH HOH A . F 4 HOH 87 387 158 HOH HOH A . F 4 HOH 88 388 161 HOH HOH A . F 4 HOH 89 389 164 HOH HOH A . F 4 HOH 90 390 166 HOH HOH A . F 4 HOH 91 391 168 HOH HOH A . F 4 HOH 92 392 169 HOH HOH A . F 4 HOH 93 393 170 HOH HOH A . F 4 HOH 94 394 171 HOH HOH A . F 4 HOH 95 395 173 HOH HOH A . F 4 HOH 96 396 174 HOH HOH A . F 4 HOH 97 397 175 HOH HOH A . F 4 HOH 98 398 176 HOH HOH A . F 4 HOH 99 399 177 HOH HOH A . F 4 HOH 100 400 178 HOH HOH A . F 4 HOH 101 401 182 HOH HOH A . F 4 HOH 102 402 183 HOH HOH A . F 4 HOH 103 403 185 HOH HOH A . F 4 HOH 104 404 186 HOH HOH A . F 4 HOH 105 405 187 HOH HOH A . F 4 HOH 106 406 191 HOH HOH A . F 4 HOH 107 407 192 HOH HOH A . F 4 HOH 108 408 193 HOH HOH A . F 4 HOH 109 409 194 HOH HOH A . F 4 HOH 110 410 195 HOH HOH A . F 4 HOH 111 411 196 HOH HOH A . F 4 HOH 112 412 197 HOH HOH A . F 4 HOH 113 413 198 HOH HOH A . F 4 HOH 114 414 200 HOH HOH A . F 4 HOH 115 415 201 HOH HOH A . F 4 HOH 116 416 203 HOH HOH A . F 4 HOH 117 417 204 HOH HOH A . F 4 HOH 118 418 206 HOH HOH A . F 4 HOH 119 419 207 HOH HOH A . F 4 HOH 120 420 209 HOH HOH A . F 4 HOH 121 421 210 HOH HOH A . F 4 HOH 122 422 211 HOH HOH A . F 4 HOH 123 423 213 HOH HOH A . F 4 HOH 124 424 215 HOH HOH A . F 4 HOH 125 425 216 HOH HOH A . F 4 HOH 126 426 217 HOH HOH A . F 4 HOH 127 427 218 HOH HOH A . F 4 HOH 128 428 220 HOH HOH A . F 4 HOH 129 429 225 HOH HOH A . F 4 HOH 130 430 227 HOH HOH A . F 4 HOH 131 431 228 HOH HOH A . F 4 HOH 132 432 229 HOH HOH A . F 4 HOH 133 433 230 HOH HOH A . F 4 HOH 134 434 231 HOH HOH A . F 4 HOH 135 435 232 HOH HOH A . F 4 HOH 136 436 236 HOH HOH A . F 4 HOH 137 437 238 HOH HOH A . F 4 HOH 138 438 239 HOH HOH A . F 4 HOH 139 439 240 HOH HOH A . F 4 HOH 140 440 241 HOH HOH A . F 4 HOH 141 441 242 HOH HOH A . F 4 HOH 142 442 246 HOH HOH A . G 4 HOH 1 601 1 HOH HOH B . G 4 HOH 2 602 3 HOH HOH B . G 4 HOH 3 603 5 HOH HOH B . G 4 HOH 4 604 6 HOH HOH B . G 4 HOH 5 605 12 HOH HOH B . G 4 HOH 6 606 13 HOH HOH B . G 4 HOH 7 607 17 HOH HOH B . G 4 HOH 8 608 19 HOH HOH B . G 4 HOH 9 609 24 HOH HOH B . G 4 HOH 10 610 25 HOH HOH B . G 4 HOH 11 611 26 HOH HOH B . G 4 HOH 12 612 29 HOH HOH B . G 4 HOH 13 613 30 HOH HOH B . G 4 HOH 14 614 32 HOH HOH B . G 4 HOH 15 615 33 HOH HOH B . G 4 HOH 16 616 38 HOH HOH B . G 4 HOH 17 617 41 HOH HOH B . G 4 HOH 18 618 42 HOH HOH B . G 4 HOH 19 619 43 HOH HOH B . G 4 HOH 20 620 44 HOH HOH B . G 4 HOH 21 621 47 HOH HOH B . G 4 HOH 22 622 49 HOH HOH B . G 4 HOH 23 623 51 HOH HOH B . G 4 HOH 24 624 53 HOH HOH B . G 4 HOH 25 625 54 HOH HOH B . G 4 HOH 26 626 55 HOH HOH B . G 4 HOH 27 627 56 HOH HOH B . G 4 HOH 28 628 57 HOH HOH B . G 4 HOH 29 629 58 HOH HOH B . G 4 HOH 30 630 59 HOH HOH B . G 4 HOH 31 631 60 HOH HOH B . G 4 HOH 32 632 63 HOH HOH B . G 4 HOH 33 633 66 HOH HOH B . G 4 HOH 34 634 68 HOH HOH B . G 4 HOH 35 635 71 HOH HOH B . G 4 HOH 36 636 73 HOH HOH B . G 4 HOH 37 637 75 HOH HOH B . G 4 HOH 38 638 76 HOH HOH B . G 4 HOH 39 639 78 HOH HOH B . G 4 HOH 40 640 81 HOH HOH B . G 4 HOH 41 641 83 HOH HOH B . G 4 HOH 42 642 89 HOH HOH B . G 4 HOH 43 643 94 HOH HOH B . G 4 HOH 44 644 98 HOH HOH B . G 4 HOH 45 645 99 HOH HOH B . G 4 HOH 46 646 102 HOH HOH B . G 4 HOH 47 647 103 HOH HOH B . G 4 HOH 48 648 104 HOH HOH B . G 4 HOH 49 649 108 HOH HOH B . G 4 HOH 50 650 110 HOH HOH B . G 4 HOH 51 651 115 HOH HOH B . G 4 HOH 52 652 121 HOH HOH B . G 4 HOH 53 653 122 HOH HOH B . G 4 HOH 54 654 123 HOH HOH B . G 4 HOH 55 655 127 HOH HOH B . G 4 HOH 56 656 128 HOH HOH B . G 4 HOH 57 657 129 HOH HOH B . G 4 HOH 58 658 130 HOH HOH B . G 4 HOH 59 659 135 HOH HOH B . G 4 HOH 60 660 136 HOH HOH B . G 4 HOH 61 661 138 HOH HOH B . G 4 HOH 62 662 139 HOH HOH B . G 4 HOH 63 663 141 HOH HOH B . G 4 HOH 64 664 143 HOH HOH B . G 4 HOH 65 665 144 HOH HOH B . G 4 HOH 66 666 145 HOH HOH B . G 4 HOH 67 667 146 HOH HOH B . G 4 HOH 68 668 147 HOH HOH B . G 4 HOH 69 669 148 HOH HOH B . G 4 HOH 70 670 149 HOH HOH B . G 4 HOH 71 671 155 HOH HOH B . G 4 HOH 72 672 159 HOH HOH B . G 4 HOH 73 673 160 HOH HOH B . G 4 HOH 74 674 162 HOH HOH B . G 4 HOH 75 675 163 HOH HOH B . G 4 HOH 76 676 165 HOH HOH B . G 4 HOH 77 677 167 HOH HOH B . G 4 HOH 78 678 172 HOH HOH B . G 4 HOH 79 679 179 HOH HOH B . G 4 HOH 80 680 180 HOH HOH B . G 4 HOH 81 681 181 HOH HOH B . G 4 HOH 82 682 184 HOH HOH B . G 4 HOH 83 683 188 HOH HOH B . G 4 HOH 84 684 189 HOH HOH B . G 4 HOH 85 685 190 HOH HOH B . G 4 HOH 86 686 199 HOH HOH B . G 4 HOH 87 687 202 HOH HOH B . G 4 HOH 88 688 205 HOH HOH B . G 4 HOH 89 689 208 HOH HOH B . G 4 HOH 90 690 212 HOH HOH B . G 4 HOH 91 691 214 HOH HOH B . G 4 HOH 92 692 219 HOH HOH B . G 4 HOH 93 693 221 HOH HOH B . G 4 HOH 94 694 222 HOH HOH B . G 4 HOH 95 695 223 HOH HOH B . G 4 HOH 96 696 224 HOH HOH B . G 4 HOH 97 697 226 HOH HOH B . G 4 HOH 98 698 233 HOH HOH B . G 4 HOH 99 699 234 HOH HOH B . G 4 HOH 100 700 235 HOH HOH B . G 4 HOH 101 701 237 HOH HOH B . G 4 HOH 102 702 243 HOH HOH B . G 4 HOH 103 703 244 HOH HOH B . G 4 HOH 104 704 245 HOH HOH B . G 4 HOH 105 705 247 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900067 _pdbx_molecule_features.name "3'-sialyl-N-acetyllactosamine" _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900067 C 2 PRD_900067 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F 2 1 B,D,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-12 2 'Structure model' 1 1 2013-07-03 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.occupancy' 14 3 'Structure model' '_atom_site.type_symbol' 15 3 'Structure model' '_chem_comp.name' 16 3 'Structure model' '_chem_comp.type' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_chem_comp.pdbx_synonyms' 33 4 'Structure model' '_database_2.pdbx_DOI' 34 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX Determination method: Author determined ; 700 ;SHEET Determination method: Author determined ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 12 ? ? -179.50 147.23 2 1 ASN A 14 ? ? 38.65 51.38 3 1 LYS A 57 ? ? -160.49 107.98 4 1 ARG A 72 ? ? 60.33 -138.20 5 1 CYS A 75 ? ? -177.41 -177.76 6 1 ALA B 43 ? ? -31.86 129.05 7 1 ARG B 45 ? ? 177.00 166.44 8 1 ASN B 52 ? ? -101.81 79.30 9 1 ARG B 72 ? ? 60.78 -143.29 10 1 GLU B 84 ? ? 57.42 12.32 11 1 ASP B 136 ? ? -142.46 -1.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A ASN 6 ? A ASN 6 7 1 Y 1 B MET 1 ? B MET 1 8 1 Y 1 B MET 2 ? B MET 2 9 1 Y 1 B LEU 3 ? B LEU 3 10 1 Y 1 B SER 4 ? B SER 4 11 1 Y 1 B LEU 5 ? B LEU 5 12 1 Y 1 B ASN 6 ? B ASN 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GAL C1 C N R 89 GAL C2 C N R 90 GAL C3 C N S 91 GAL C4 C N R 92 GAL C5 C N R 93 GAL C6 C N N 94 GAL O1 O N N 95 GAL O2 O N N 96 GAL O3 O N N 97 GAL O4 O N N 98 GAL O5 O N N 99 GAL O6 O N N 100 GAL H1 H N N 101 GAL H2 H N N 102 GAL H3 H N N 103 GAL H4 H N N 104 GAL H5 H N N 105 GAL H61 H N N 106 GAL H62 H N N 107 GAL HO1 H N N 108 GAL HO2 H N N 109 GAL HO3 H N N 110 GAL HO4 H N N 111 GAL HO6 H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 HIS N N N N 162 HIS CA C N S 163 HIS C C N N 164 HIS O O N N 165 HIS CB C N N 166 HIS CG C Y N 167 HIS ND1 N Y N 168 HIS CD2 C Y N 169 HIS CE1 C Y N 170 HIS NE2 N Y N 171 HIS OXT O N N 172 HIS H H N N 173 HIS H2 H N N 174 HIS HA H N N 175 HIS HB2 H N N 176 HIS HB3 H N N 177 HIS HD1 H N N 178 HIS HD2 H N N 179 HIS HE1 H N N 180 HIS HE2 H N N 181 HIS HXT H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 ILE N N N N 186 ILE CA C N S 187 ILE C C N N 188 ILE O O N N 189 ILE CB C N S 190 ILE CG1 C N N 191 ILE CG2 C N N 192 ILE CD1 C N N 193 ILE OXT O N N 194 ILE H H N N 195 ILE H2 H N N 196 ILE HA H N N 197 ILE HB H N N 198 ILE HG12 H N N 199 ILE HG13 H N N 200 ILE HG21 H N N 201 ILE HG22 H N N 202 ILE HG23 H N N 203 ILE HD11 H N N 204 ILE HD12 H N N 205 ILE HD13 H N N 206 ILE HXT H N N 207 LEU N N N N 208 LEU CA C N S 209 LEU C C N N 210 LEU O O N N 211 LEU CB C N N 212 LEU CG C N N 213 LEU CD1 C N N 214 LEU CD2 C N N 215 LEU OXT O N N 216 LEU H H N N 217 LEU H2 H N N 218 LEU HA H N N 219 LEU HB2 H N N 220 LEU HB3 H N N 221 LEU HG H N N 222 LEU HD11 H N N 223 LEU HD12 H N N 224 LEU HD13 H N N 225 LEU HD21 H N N 226 LEU HD22 H N N 227 LEU HD23 H N N 228 LEU HXT H N N 229 LYS N N N N 230 LYS CA C N S 231 LYS C C N N 232 LYS O O N N 233 LYS CB C N N 234 LYS CG C N N 235 LYS CD C N N 236 LYS CE C N N 237 LYS NZ N N N 238 LYS OXT O N N 239 LYS H H N N 240 LYS H2 H N N 241 LYS HA H N N 242 LYS HB2 H N N 243 LYS HB3 H N N 244 LYS HG2 H N N 245 LYS HG3 H N N 246 LYS HD2 H N N 247 LYS HD3 H N N 248 LYS HE2 H N N 249 LYS HE3 H N N 250 LYS HZ1 H N N 251 LYS HZ2 H N N 252 LYS HZ3 H N N 253 LYS HXT H N N 254 MET N N N N 255 MET CA C N S 256 MET C C N N 257 MET O O N N 258 MET CB C N N 259 MET CG C N N 260 MET SD S N N 261 MET CE C N N 262 MET OXT O N N 263 MET H H N N 264 MET H2 H N N 265 MET HA H N N 266 MET HB2 H N N 267 MET HB3 H N N 268 MET HG2 H N N 269 MET HG3 H N N 270 MET HE1 H N N 271 MET HE2 H N N 272 MET HE3 H N N 273 MET HXT H N N 274 NAG C1 C N R 275 NAG C2 C N R 276 NAG C3 C N R 277 NAG C4 C N S 278 NAG C5 C N R 279 NAG C6 C N N 280 NAG C7 C N N 281 NAG C8 C N N 282 NAG N2 N N N 283 NAG O1 O N N 284 NAG O3 O N N 285 NAG O4 O N N 286 NAG O5 O N N 287 NAG O6 O N N 288 NAG O7 O N N 289 NAG H1 H N N 290 NAG H2 H N N 291 NAG H3 H N N 292 NAG H4 H N N 293 NAG H5 H N N 294 NAG H61 H N N 295 NAG H62 H N N 296 NAG H81 H N N 297 NAG H82 H N N 298 NAG H83 H N N 299 NAG HN2 H N N 300 NAG HO1 H N N 301 NAG HO3 H N N 302 NAG HO4 H N N 303 NAG HO6 H N N 304 PHE N N N N 305 PHE CA C N S 306 PHE C C N N 307 PHE O O N N 308 PHE CB C N N 309 PHE CG C Y N 310 PHE CD1 C Y N 311 PHE CD2 C Y N 312 PHE CE1 C Y N 313 PHE CE2 C Y N 314 PHE CZ C Y N 315 PHE OXT O N N 316 PHE H H N N 317 PHE H2 H N N 318 PHE HA H N N 319 PHE HB2 H N N 320 PHE HB3 H N N 321 PHE HD1 H N N 322 PHE HD2 H N N 323 PHE HE1 H N N 324 PHE HE2 H N N 325 PHE HZ H N N 326 PHE HXT H N N 327 PRO N N N N 328 PRO CA C N S 329 PRO C C N N 330 PRO O O N N 331 PRO CB C N N 332 PRO CG C N N 333 PRO CD C N N 334 PRO OXT O N N 335 PRO H H N N 336 PRO HA H N N 337 PRO HB2 H N N 338 PRO HB3 H N N 339 PRO HG2 H N N 340 PRO HG3 H N N 341 PRO HD2 H N N 342 PRO HD3 H N N 343 PRO HXT H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 SIA C1 C N N 359 SIA C2 C N R 360 SIA C3 C N N 361 SIA C4 C N S 362 SIA C5 C N R 363 SIA C6 C N R 364 SIA C7 C N R 365 SIA C8 C N R 366 SIA C9 C N N 367 SIA C10 C N N 368 SIA C11 C N N 369 SIA N5 N N N 370 SIA O1A O N N 371 SIA O1B O N N 372 SIA O2 O N N 373 SIA O4 O N N 374 SIA O6 O N N 375 SIA O7 O N N 376 SIA O8 O N N 377 SIA O9 O N N 378 SIA O10 O N N 379 SIA H32 H N N 380 SIA H31 H N N 381 SIA H4 H N N 382 SIA H5 H N N 383 SIA H6 H N N 384 SIA H7 H N N 385 SIA H8 H N N 386 SIA H92 H N N 387 SIA H91 H N N 388 SIA H111 H N N 389 SIA H113 H N N 390 SIA H112 H N N 391 SIA HN5 H N N 392 SIA HO1B H N N 393 SIA HO2 H N N 394 SIA HO4 H N N 395 SIA HO7 H N N 396 SIA HO8 H N N 397 SIA HO9 H N N 398 THR N N N N 399 THR CA C N S 400 THR C C N N 401 THR O O N N 402 THR CB C N R 403 THR OG1 O N N 404 THR CG2 C N N 405 THR OXT O N N 406 THR H H N N 407 THR H2 H N N 408 THR HA H N N 409 THR HB H N N 410 THR HG1 H N N 411 THR HG21 H N N 412 THR HG22 H N N 413 THR HG23 H N N 414 THR HXT H N N 415 TRP N N N N 416 TRP CA C N S 417 TRP C C N N 418 TRP O O N N 419 TRP CB C N N 420 TRP CG C Y N 421 TRP CD1 C Y N 422 TRP CD2 C Y N 423 TRP NE1 N Y N 424 TRP CE2 C Y N 425 TRP CE3 C Y N 426 TRP CZ2 C Y N 427 TRP CZ3 C Y N 428 TRP CH2 C Y N 429 TRP OXT O N N 430 TRP H H N N 431 TRP H2 H N N 432 TRP HA H N N 433 TRP HB2 H N N 434 TRP HB3 H N N 435 TRP HD1 H N N 436 TRP HE1 H N N 437 TRP HE3 H N N 438 TRP HZ2 H N N 439 TRP HZ3 H N N 440 TRP HH2 H N N 441 TRP HXT H N N 442 TYR N N N N 443 TYR CA C N S 444 TYR C C N N 445 TYR O O N N 446 TYR CB C N N 447 TYR CG C Y N 448 TYR CD1 C Y N 449 TYR CD2 C Y N 450 TYR CE1 C Y N 451 TYR CE2 C Y N 452 TYR CZ C Y N 453 TYR OH O N N 454 TYR OXT O N N 455 TYR H H N N 456 TYR H2 H N N 457 TYR HA H N N 458 TYR HB2 H N N 459 TYR HB3 H N N 460 TYR HD1 H N N 461 TYR HD2 H N N 462 TYR HE1 H N N 463 TYR HE2 H N N 464 TYR HH H N N 465 TYR HXT H N N 466 VAL N N N N 467 VAL CA C N S 468 VAL C C N N 469 VAL O O N N 470 VAL CB C N N 471 VAL CG1 C N N 472 VAL CG2 C N N 473 VAL OXT O N N 474 VAL H H N N 475 VAL H2 H N N 476 VAL HA H N N 477 VAL HB H N N 478 VAL HG11 H N N 479 VAL HG12 H N N 480 VAL HG13 H N N 481 VAL HG21 H N N 482 VAL HG22 H N N 483 VAL HG23 H N N 484 VAL HXT H N N 485 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GAL C1 C2 sing N N 83 GAL C1 O1 sing N N 84 GAL C1 O5 sing N N 85 GAL C1 H1 sing N N 86 GAL C2 C3 sing N N 87 GAL C2 O2 sing N N 88 GAL C2 H2 sing N N 89 GAL C3 C4 sing N N 90 GAL C3 O3 sing N N 91 GAL C3 H3 sing N N 92 GAL C4 C5 sing N N 93 GAL C4 O4 sing N N 94 GAL C4 H4 sing N N 95 GAL C5 C6 sing N N 96 GAL C5 O5 sing N N 97 GAL C5 H5 sing N N 98 GAL C6 O6 sing N N 99 GAL C6 H61 sing N N 100 GAL C6 H62 sing N N 101 GAL O1 HO1 sing N N 102 GAL O2 HO2 sing N N 103 GAL O3 HO3 sing N N 104 GAL O4 HO4 sing N N 105 GAL O6 HO6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 NAG C1 C2 sing N N 261 NAG C1 O1 sing N N 262 NAG C1 O5 sing N N 263 NAG C1 H1 sing N N 264 NAG C2 C3 sing N N 265 NAG C2 N2 sing N N 266 NAG C2 H2 sing N N 267 NAG C3 C4 sing N N 268 NAG C3 O3 sing N N 269 NAG C3 H3 sing N N 270 NAG C4 C5 sing N N 271 NAG C4 O4 sing N N 272 NAG C4 H4 sing N N 273 NAG C5 C6 sing N N 274 NAG C5 O5 sing N N 275 NAG C5 H5 sing N N 276 NAG C6 O6 sing N N 277 NAG C6 H61 sing N N 278 NAG C6 H62 sing N N 279 NAG C7 C8 sing N N 280 NAG C7 N2 sing N N 281 NAG C7 O7 doub N N 282 NAG C8 H81 sing N N 283 NAG C8 H82 sing N N 284 NAG C8 H83 sing N N 285 NAG N2 HN2 sing N N 286 NAG O1 HO1 sing N N 287 NAG O3 HO3 sing N N 288 NAG O4 HO4 sing N N 289 NAG O6 HO6 sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 SIA C1 C2 sing N N 344 SIA C1 O1A doub N N 345 SIA C1 O1B sing N N 346 SIA C2 C3 sing N N 347 SIA C2 O2 sing N N 348 SIA C2 O6 sing N N 349 SIA C3 C4 sing N N 350 SIA C3 H32 sing N N 351 SIA C3 H31 sing N N 352 SIA C4 C5 sing N N 353 SIA C4 O4 sing N N 354 SIA C4 H4 sing N N 355 SIA C5 C6 sing N N 356 SIA C5 N5 sing N N 357 SIA C5 H5 sing N N 358 SIA C6 C7 sing N N 359 SIA C6 O6 sing N N 360 SIA C6 H6 sing N N 361 SIA C7 C8 sing N N 362 SIA C7 O7 sing N N 363 SIA C7 H7 sing N N 364 SIA C8 C9 sing N N 365 SIA C8 O8 sing N N 366 SIA C8 H8 sing N N 367 SIA C9 O9 sing N N 368 SIA C9 H92 sing N N 369 SIA C9 H91 sing N N 370 SIA C10 C11 sing N N 371 SIA C10 N5 sing N N 372 SIA C10 O10 doub N N 373 SIA C11 H111 sing N N 374 SIA C11 H113 sing N N 375 SIA C11 H112 sing N N 376 SIA N5 HN5 sing N N 377 SIA O1B HO1B sing N N 378 SIA O2 HO2 sing N N 379 SIA O4 HO4 sing N N 380 SIA O7 HO7 sing N N 381 SIA O8 HO8 sing N N 382 SIA O9 HO9 sing N N 383 THR N CA sing N N 384 THR N H sing N N 385 THR N H2 sing N N 386 THR CA C sing N N 387 THR CA CB sing N N 388 THR CA HA sing N N 389 THR C O doub N N 390 THR C OXT sing N N 391 THR CB OG1 sing N N 392 THR CB CG2 sing N N 393 THR CB HB sing N N 394 THR OG1 HG1 sing N N 395 THR CG2 HG21 sing N N 396 THR CG2 HG22 sing N N 397 THR CG2 HG23 sing N N 398 THR OXT HXT sing N N 399 TRP N CA sing N N 400 TRP N H sing N N 401 TRP N H2 sing N N 402 TRP CA C sing N N 403 TRP CA CB sing N N 404 TRP CA HA sing N N 405 TRP C O doub N N 406 TRP C OXT sing N N 407 TRP CB CG sing N N 408 TRP CB HB2 sing N N 409 TRP CB HB3 sing N N 410 TRP CG CD1 doub Y N 411 TRP CG CD2 sing Y N 412 TRP CD1 NE1 sing Y N 413 TRP CD1 HD1 sing N N 414 TRP CD2 CE2 doub Y N 415 TRP CD2 CE3 sing Y N 416 TRP NE1 CE2 sing Y N 417 TRP NE1 HE1 sing N N 418 TRP CE2 CZ2 sing Y N 419 TRP CE3 CZ3 doub Y N 420 TRP CE3 HE3 sing N N 421 TRP CZ2 CH2 doub Y N 422 TRP CZ2 HZ2 sing N N 423 TRP CZ3 CH2 sing Y N 424 TRP CZ3 HZ3 sing N N 425 TRP CH2 HH2 sing N N 426 TRP OXT HXT sing N N 427 TYR N CA sing N N 428 TYR N H sing N N 429 TYR N H2 sing N N 430 TYR CA C sing N N 431 TYR CA CB sing N N 432 TYR CA HA sing N N 433 TYR C O doub N N 434 TYR C OXT sing N N 435 TYR CB CG sing N N 436 TYR CB HB2 sing N N 437 TYR CB HB3 sing N N 438 TYR CG CD1 doub Y N 439 TYR CG CD2 sing Y N 440 TYR CD1 CE1 sing Y N 441 TYR CD1 HD1 sing N N 442 TYR CD2 CE2 doub Y N 443 TYR CD2 HD2 sing N N 444 TYR CE1 CZ doub Y N 445 TYR CE1 HE1 sing N N 446 TYR CE2 CZ sing Y N 447 TYR CE2 HE2 sing N N 448 TYR CZ OH sing N N 449 TYR OH HH sing N N 450 TYR OXT HXT sing N N 451 VAL N CA sing N N 452 VAL N H sing N N 453 VAL N H2 sing N N 454 VAL CA C sing N N 455 VAL CA CB sing N N 456 VAL CA HA sing N N 457 VAL C O doub N N 458 VAL C OXT sing N N 459 VAL CB CG1 sing N N 460 VAL CB CG2 sing N N 461 VAL CB HB sing N N 462 VAL CG1 HG11 sing N N 463 VAL CG1 HG12 sing N N 464 VAL CG1 HG13 sing N N 465 VAL CG2 HG21 sing N N 466 VAL CG2 HG22 sing N N 467 VAL CG2 HG23 sing N N 468 VAL OXT HXT sing N N 469 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 502 n C 2 GAL 2 C GAL 2 A GAL 501 n C 2 SIA 3 C SIA 3 A SIA 500 n D 2 NAG 1 D NAG 1 B NAG 502 n D 2 GAL 2 D GAL 2 B GAL 501 n D 2 SIA 3 D SIA 3 B SIA 500 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NAG O4 HO4 sing ? 2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n 2 SIA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2YV8 _pdbx_initial_refinement_model.details ? #