HEADER HYDROLASE 30-NOV-11 3VL9 TITLE CRYSTAL STRUCTURE OF XEG-XYLOGLUCAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOGLUCAN-SPECIFIC ENDO-BETA-1,4-GLUCANASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XYLOGLUCANASE A, XYLOGLUCANENDOHYDROLASE A; COMPND 5 EC: 3.2.1.151; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ACULEATUS; SOURCE 3 ORGANISM_TAXID: 5053; SOURCE 4 GENE: XGEA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.YOSHIZAWA,T.SHIMIZU,H.HIRANO,M.SATO,H.HASHIMOTO REVDAT 4 08-NOV-23 3VL9 1 HETSYN REVDAT 3 29-JUL-20 3VL9 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 14-AUG-13 3VL9 1 JRNL REVDAT 1 18-APR-12 3VL9 0 JRNL AUTH T.YOSHIZAWA,T.SHIMIZU,H.HIRANO,M.SATO,H.HASHIMOTO JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF XYLOGLUCAN-SPECIFIC JRNL TITL 2 ENDO-BETA-1,4-GLUCANASE (XEG) BY XEG-PROTEIN INHIBITOR JRNL REF J.BIOL.CHEM. V. 287 18710 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22496365 JRNL DOI 10.1074/JBC.M112.350520 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 114328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 357 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 701 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3592 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2242 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4954 ; 1.657 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5487 ; 3.020 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 7.205 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;31.929 ;25.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;10.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.338 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3998 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5802 ; 3.292 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 145 ;20.953 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6249 ; 6.918 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 224 REMARK 3 RESIDUE RANGE : A 225 A 230 REMARK 3 RESIDUE RANGE : A 231 A 904 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8048 27.8299 -7.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.0009 T22: 0.0014 REMARK 3 T33: 0.0008 T12: -0.0011 REMARK 3 T13: -0.0005 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2401 L22: 0.2019 REMARK 3 L33: 0.1764 L12: -0.0927 REMARK 3 L13: 0.0502 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0054 S13: 0.0069 REMARK 3 S21: 0.0072 S22: -0.0093 S23: -0.0115 REMARK 3 S31: -0.0041 S32: 0.0060 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 224 REMARK 3 RESIDUE RANGE : B 225 B 229 REMARK 3 RESIDUE RANGE : B 231 B 906 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4480 51.2054 -7.2698 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: 0.0025 REMARK 3 T33: 0.0044 T12: -0.0014 REMARK 3 T13: -0.0017 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2030 L22: 0.2944 REMARK 3 L33: 0.1725 L12: -0.1149 REMARK 3 L13: -0.0018 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.0187 S13: -0.0144 REMARK 3 S21: -0.0010 S22: 0.0001 S23: -0.0149 REMARK 3 S31: 0.0001 S32: 0.0038 S33: -0.0136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000095185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3VL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.37850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.18700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.64150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.18700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.37850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.64150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 189 CD GLU A 189 OE1 -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 189 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 110.63 -162.04 REMARK 500 PHE A 207 -65.74 -101.46 REMARK 500 ASP B 159 30.43 -91.85 REMARK 500 PHE B 207 -68.18 -104.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VL8 RELATED DB: PDB REMARK 900 RELATED ID: 3VLA RELATED DB: PDB REMARK 900 RELATED ID: 3VLB RELATED DB: PDB DBREF 3VL9 A 1 224 UNP O94218 XGEA_ASPAC 15 238 DBREF 3VL9 B 1 224 UNP O94218 XGEA_ASPAC 15 238 SEQADV 3VL9 GLY A -4 UNP O94218 EXPRESSION TAG SEQADV 3VL9 PRO A -3 UNP O94218 EXPRESSION TAG SEQADV 3VL9 LEU A -2 UNP O94218 EXPRESSION TAG SEQADV 3VL9 GLY A -1 UNP O94218 EXPRESSION TAG SEQADV 3VL9 SER A 0 UNP O94218 EXPRESSION TAG SEQADV 3VL9 GLY B -4 UNP O94218 EXPRESSION TAG SEQADV 3VL9 PRO B -3 UNP O94218 EXPRESSION TAG SEQADV 3VL9 LEU B -2 UNP O94218 EXPRESSION TAG SEQADV 3VL9 GLY B -1 UNP O94218 EXPRESSION TAG SEQADV 3VL9 SER B 0 UNP O94218 EXPRESSION TAG SEQRES 1 A 229 GLY PRO LEU GLY SER ALA SER LEU GLN ARG ARG SER ASP SEQRES 2 A 229 PHE CYS GLY GLN TRP ASP THR ALA THR ALA GLY ASP PHE SEQRES 3 A 229 THR LEU TYR ASN ASP LEU TRP GLY GLU SER ALA GLY THR SEQRES 4 A 229 GLY SER GLN CYS THR GLY VAL ASP SER TYR SER GLY ASP SEQRES 5 A 229 THR ILE ALA TRP HIS THR SER TRP SER TRP SER GLY GLY SEQRES 6 A 229 SER SER SER VAL LYS SER TYR VAL ASN ALA ALA LEU THR SEQRES 7 A 229 PHE THR PRO THR GLN LEU ASN CYS ILE SER SER ILE PRO SEQRES 8 A 229 THR THR TRP LYS TRP SER TYR SER GLY SER SER ILE VAL SEQRES 9 A 229 ALA ASP VAL ALA TYR ASP THR PHE LEU ALA GLU THR ALA SEQRES 10 A 229 SER GLY SER SER LYS TYR GLU ILE MET VAL TRP LEU ALA SEQRES 11 A 229 ALA LEU GLY GLY ALA GLY PRO ILE SER SER THR GLY SER SEQRES 12 A 229 THR ILE ALA THR PRO THR ILE ALA GLY VAL ASN TRP LYS SEQRES 13 A 229 LEU TYR SER GLY PRO ASN GLY ASP THR THR VAL TYR SER SEQRES 14 A 229 PHE VAL ALA ASP SER THR THR GLU SER PHE SER GLY ASP SEQRES 15 A 229 LEU ASN ASP PHE PHE THR TYR LEU VAL ASP ASN GLU GLY SEQRES 16 A 229 VAL SER ASP GLU LEU TYR LEU THR THR LEU GLU ALA GLY SEQRES 17 A 229 THR GLU PRO PHE THR GLY SER ASN ALA LYS LEU THR VAL SEQRES 18 A 229 SER GLU TYR SER ILE SER ILE GLU SEQRES 1 B 229 GLY PRO LEU GLY SER ALA SER LEU GLN ARG ARG SER ASP SEQRES 2 B 229 PHE CYS GLY GLN TRP ASP THR ALA THR ALA GLY ASP PHE SEQRES 3 B 229 THR LEU TYR ASN ASP LEU TRP GLY GLU SER ALA GLY THR SEQRES 4 B 229 GLY SER GLN CYS THR GLY VAL ASP SER TYR SER GLY ASP SEQRES 5 B 229 THR ILE ALA TRP HIS THR SER TRP SER TRP SER GLY GLY SEQRES 6 B 229 SER SER SER VAL LYS SER TYR VAL ASN ALA ALA LEU THR SEQRES 7 B 229 PHE THR PRO THR GLN LEU ASN CYS ILE SER SER ILE PRO SEQRES 8 B 229 THR THR TRP LYS TRP SER TYR SER GLY SER SER ILE VAL SEQRES 9 B 229 ALA ASP VAL ALA TYR ASP THR PHE LEU ALA GLU THR ALA SEQRES 10 B 229 SER GLY SER SER LYS TYR GLU ILE MET VAL TRP LEU ALA SEQRES 11 B 229 ALA LEU GLY GLY ALA GLY PRO ILE SER SER THR GLY SER SEQRES 12 B 229 THR ILE ALA THR PRO THR ILE ALA GLY VAL ASN TRP LYS SEQRES 13 B 229 LEU TYR SER GLY PRO ASN GLY ASP THR THR VAL TYR SER SEQRES 14 B 229 PHE VAL ALA ASP SER THR THR GLU SER PHE SER GLY ASP SEQRES 15 B 229 LEU ASN ASP PHE PHE THR TYR LEU VAL ASP ASN GLU GLY SEQRES 16 B 229 VAL SER ASP GLU LEU TYR LEU THR THR LEU GLU ALA GLY SEQRES 17 B 229 THR GLU PRO PHE THR GLY SER ASN ALA LYS LEU THR VAL SEQRES 18 B 229 SER GLU TYR SER ILE SER ILE GLU HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET XYS C 5 9 HET XYS C 6 9 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET XYS D 5 9 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 3 BGC 8(C6 H12 O6) FORMUL 3 XYS 3(C5 H10 O5) FORMUL 5 HOH *701(H2 O) HELIX 1 1 GLY A 29 GLY A 33 5 5 HELIX 2 2 ASN A 80 ILE A 82 5 3 HELIX 3 3 LEU A 178 GLU A 189 1 12 HELIX 4 4 GLY B 29 GLY B 33 5 5 HELIX 5 5 ASN B 80 ILE B 82 5 3 HELIX 6 6 LEU B 178 GLU B 189 1 12 SHEET 1 A 9 THR A 15 ALA A 18 0 SHEET 2 A 9 PHE A 21 TYR A 24 -1 O LEU A 23 N ALA A 16 SHEET 3 A 9 VAL A 68 LEU A 72 -1 O ALA A 71 N THR A 22 SHEET 4 A 9 TYR A 196 ILE A 221 -1 O ALA A 202 N ALA A 70 SHEET 5 A 9 PRO A 86 ALA A 109 -1 N ALA A 109 O TYR A 196 SHEET 6 A 9 SER A 116 LEU A 127 -1 O LEU A 127 N ALA A 100 SHEET 7 A 9 THR A 160 ALA A 167 1 O PHE A 165 N TRP A 123 SHEET 8 A 9 VAL A 148 ASN A 157 -1 N GLY A 155 O VAL A 162 SHEET 9 A 9 THR A 144 ILE A 145 -1 N ILE A 145 O VAL A 148 SHEET 1 B 4 THR A 34 SER A 45 0 SHEET 2 B 4 THR A 48 SER A 58 -1 O SER A 54 N CYS A 38 SHEET 3 B 4 TYR A 196 ILE A 221 -1 O VAL A 216 N TRP A 51 SHEET 4 B 4 THR A 77 GLN A 78 -1 N THR A 77 O LEU A 197 SHEET 1 C 5 THR A 34 SER A 45 0 SHEET 2 C 5 THR A 48 SER A 58 -1 O SER A 54 N CYS A 38 SHEET 3 C 5 TYR A 196 ILE A 221 -1 O VAL A 216 N TRP A 51 SHEET 4 C 5 PRO A 86 ALA A 109 -1 N ALA A 109 O TYR A 196 SHEET 5 C 5 SER A 173 ASP A 177 -1 O PHE A 174 N TRP A 89 SHEET 1 D 9 THR B 15 ALA B 18 0 SHEET 2 D 9 PHE B 21 TYR B 24 -1 O PHE B 21 N ALA B 18 SHEET 3 D 9 VAL B 68 LEU B 72 -1 O ALA B 71 N THR B 22 SHEET 4 D 9 TYR B 196 ILE B 221 -1 O ALA B 202 N ALA B 70 SHEET 5 D 9 PRO B 86 ALA B 109 -1 N LYS B 90 O GLU B 218 SHEET 6 D 9 TYR B 118 LEU B 127 -1 O LEU B 127 N ALA B 100 SHEET 7 D 9 THR B 160 ALA B 167 1 O PHE B 165 N TRP B 123 SHEET 8 D 9 VAL B 148 ASN B 157 -1 N GLY B 155 O VAL B 162 SHEET 9 D 9 THR B 144 ILE B 145 -1 N ILE B 145 O VAL B 148 SHEET 1 E 4 THR B 34 SER B 45 0 SHEET 2 E 4 THR B 48 SER B 58 -1 O THR B 48 N SER B 45 SHEET 3 E 4 TYR B 196 ILE B 221 -1 O VAL B 216 N TRP B 51 SHEET 4 E 4 THR B 77 GLN B 78 -1 N THR B 77 O LEU B 197 SHEET 1 F 5 THR B 34 SER B 45 0 SHEET 2 F 5 THR B 48 SER B 58 -1 O THR B 48 N SER B 45 SHEET 3 F 5 TYR B 196 ILE B 221 -1 O VAL B 216 N TRP B 51 SHEET 4 F 5 PRO B 86 ALA B 109 -1 N LYS B 90 O GLU B 218 SHEET 5 F 5 SER B 173 ASP B 177 -1 O PHE B 174 N TRP B 89 SSBOND 1 CYS A 10 CYS A 38 1555 1555 2.10 SSBOND 2 CYS B 10 CYS B 38 1555 1555 2.09 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.42 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.42 LINK O6 BGC C 2 C1 XYS C 6 1555 1555 1.48 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.47 LINK O6 BGC C 3 C1 XYS C 5 1555 1555 1.41 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.46 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.47 LINK O6 BGC D 3 C1 XYS D 5 1555 1555 1.39 CRYST1 62.757 79.283 80.374 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012442 0.00000